View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17909_low_34 (Length: 248)

Name: NF17909_low_34
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17909_low_34
NF17909_low_34
[»] chr7 (2 HSPs)
chr7 (33-248)||(9248218-9248433)
chr7 (33-248)||(9244104-9244314)
[»] scaffold0653 (1 HSPs)
scaffold0653 (33-248)||(5450-5661)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 33 - 248
Target Start/End: Original strand, 9248218 - 9248433
Alignment:
Q  33 tttcttcgtgcaatatacattcctcttcatcttatccattatcaatttttcaaaccgttcgagatgcaccatatctcaattctctgcaatttattatacc 132  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9248218 tttctttgtgcaatatacattcctcttcatcttatccattatcaatttttcaaaccgttcgagatgcaccatatctcaattctctgcaatttattatacc 9248317  T
Q  133 tttatctaagaacatacaaagcaagcaataacctcaggcctcaactcctagaatccaaacaagaaaacatattaattcaatatgaagtttggataaaaaa 232  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9248318 tttatcgaagaacatacaaagcaagcaataacctcaggcctcaactcctagaatccaaacaagaaaacatattaattcaatatgaagtttggataaaaaa 9248417  T
Q  233 caaacacttcaatact 248  Q
    |||||| |||||||||    
T  9248418 caaacaattcaatact 9248433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 33 - 248
Target Start/End: Original strand, 9244104 - 9244314
Alignment:
Q  33 tttcttcgtgcaatatacattcctcttcatcttatccattatcaatttttcaaaccgttcgagatgcaccatatctcaattctctgcaatttatt-atac 131  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| || ||||    
T  9244104 tttctttgtgcaatatacatccctcttcatcttatccattatcaatttttcagaccgttctagatgccccatatctcaattctctgcaatttttttatac 9244203  T
Q  132 ctttatctaagaacatacaaagcaagcaataacctcaggcctcaactcctagaatccaaacaagaaaacatattaattcaatatgaagtttggataaaaa 231  Q
    ||| | | ||||| ||||||       |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  9244204 cttcaacaaagaatatacaat------aataacctcatgcctcaactcctagaatccaaacaagaaaacatattaattcaatatcaagtttggataaaac 9244297  T
Q  232 acaaacacttcaatact 248  Q
    ||||||| |||||||||    
T  9244298 acaaacaattcaatact 9244314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0653 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0653
Description:

Target: scaffold0653; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 33 - 248
Target Start/End: Complemental strand, 5661 - 5450
Alignment:
Q  33 tttcttcgtgcaatatacattcctcttcatcttatccattatcaatttttcaaaccgttcgagatgcaccatatctcaattctctgcaa-tttattatac 131  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| ||| ||||||    
T  5661 tttctttgtgcaatatacatccctcttcatcttatccattatcaatttttcagaccgttctagatgccccatatctcaattctctgcaatttttttatac 5562  T
Q  132 ctttatctaagaacatacaaagcaagcaataacctcaggcctcaactcctagaatccaaacaagaaaacatattaattcaatatgaagtttggataaaaa 231  Q
    ||| | | ||||| ||||||       |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5561 cttcaacaaagaatatacaa------taataacctcatgcctcaactcctagaatccaaacaagaaaacatattaattcaatatcaagtttggataaaaa 5468  T
Q  232 -acaaacacttcaatact 248  Q
     ||||||| |||||||||    
T  5467 cacaaacaattcaatact 5450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University