View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_low_35 (Length: 246)
Name: NF17909_low_35
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 32 - 230
Target Start/End: Original strand, 18790560 - 18790756
Alignment:
| Q |
32 |
ttattctcacatcggatgtcaaacctgcactattcctatcgaacctttcttactcgcaacttcatattcgattcgtgctgccagtcttcctacatcaaat |
131 |
Q |
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| T |
18790560 |
ttattctcacatcggatgtcaaacctttactattcctgtcgaacatttcttactcgcaacttcatattcgattcgtgctgccaatcatcctacatcagat |
18790659 |
T |
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| Q |
132 |
agagatgaagaagcaatcagaaggatttgtagattacatttcaatattttcctgtgttttaatttttgtaaacataaggatgataaatgacatcaatgt |
230 |
Q |
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| T |
18790660 |
agagatgaagaagcaatc--aatgatttgcggattacatttcaatattttcatgtgttttaatttttgtaaacataaggatgataaatgacatcaatgt |
18790756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 1617679 - 1617779
Alignment:
| Q |
130 |
atagagatgaagaagcaatcagaaggatttgtagattacatttcaatattttcctgtgttttaatttttgtaaacataaggatgataaatgacatcaatg |
229 |
Q |
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| T |
1617679 |
atagagatgaagaagcaatcagaaggatttgcagattacgtttcaatattttcctgtgttttaatttttgcaaacaacaggatgataaatgacatcaatg |
1617778 |
T |
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| Q |
230 |
t |
230 |
Q |
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| T |
1617779 |
t |
1617779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 1613492 - 1613590
Alignment:
| Q |
135 |
gatgaagaagcaatcagaaggatttgtagattacatttcaatattttcctgtgttttaatttttgtaaac-----ataaggatgataaatgacatcaatg |
229 |
Q |
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| T |
1613492 |
gatgaagaagcaatcagaaggatttgccgattacatttcaatatt---ctctgtttcaatttttgcaaacaaattaaaaggatgataaatgacatcaatg |
1613588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 1150880 - 1150826
Alignment:
| Q |
42 |
atcggatgtcaaacctgcactattcctatcgaacctttcttactcgcaacttcat |
96 |
Q |
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| T |
1150880 |
atcggatgtcaaatctgcactattcccatcgaatctttcttgcgcgccacttcat |
1150826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 2879918 - 2879830
Alignment:
| Q |
40 |
acatcggatgtcaaacctgcactattcctatcgaacctttcttactcgcaacttcatattcgattcgtgctgccagtcttcctacatca |
128 |
Q |
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| T |
2879918 |
acatcggatgccaaatttgcactattcccattgagcctttcttacgcgccacttcgtcttcaatacgtgcagccagtcttcctacatca |
2879830 |
T |
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