View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_low_4 (Length: 640)
Name: NF17909_low_4
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 8881421 - 8881057
Alignment:
| Q |
19 |
ttagatgcctcccattttgaaataaatatgggttttttcatttaattattaactatttattgttgacaatgatttgtgtttcgatgccaacttatgatgt |
118 |
Q |
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| T |
8881421 |
ttagatgcctcccattttgaaataaatatgggttttttcatttaattattaactatttattgttgacaatgatttgtgtttcgatgccaacttatgatgt |
8881322 |
T |
|
| Q |
119 |
tctgcttattatagatgttaactttaattgcatcacatgtgataggaacagcaagtatacaataatgccataagaatatagcttcagacaatgcatgcta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8881321 |
tctgcttattatagatgttaactttaattgcatcacatgtgataggaacagcaagtatacaataatgccataagaatatagcttctgacaatgcatgcta |
8881222 |
T |
|
| Q |
219 |
gttaacaaaactatgttccgcagctaccaaattcgtggttggatttatggttcggcaggtatacatcctttgccatctaccgttttgtttcttaggacac |
318 |
Q |
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| T |
8881221 |
gttaacaaaactatgttccacagctaccaaattcgtggttggatttatggttcggcaggtatacatcctttgctatctaccgttttgtttcttaggacac |
8881122 |
T |
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| Q |
319 |
aatcaaatcgatctcaataaatccacagcatccatgtttcactccatccatcattctcaataaac |
383 |
Q |
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| T |
8881121 |
aatcaaatcgatctcaataaatccacagcatccatgtttcactccatccatcattctcaataaac |
8881057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 450 - 619
Target Start/End: Complemental strand, 8880990 - 8880821
Alignment:
| Q |
450 |
aaacctcaaccaacttctccacataaacacacttccagtaacctctctcaactccacaccttcaattactccatcgaccatcacattcggttttcagagt |
549 |
Q |
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| T |
8880990 |
aaacctcaaccaacttctccacataaacacacttccagtaacctctctcaactccacaccttcaattactccatcgaccatcacattcggtttacagagt |
8880891 |
T |
|
| Q |
550 |
aaaaatgccagaaaatcgattttggtggccgatggtttgaggcgggtggtgtatgttcgggctactgcaa |
619 |
Q |
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| T |
8880890 |
aaaaatgccagaaaatcgattttggtggccgatggtttgaggcgggtggtgtatgttcgggctactgcaa |
8880821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 450 - 613
Target Start/End: Complemental strand, 8885095 - 8884932
Alignment:
| Q |
450 |
aaacctcaaccaacttctccacataaacacacttccagtaacctctctcaactccacaccttcaattactccatcgaccatcacattcggttttcagagt |
549 |
Q |
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|||||| |||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| || |
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| T |
8885095 |
aaacctaaaccaacttctccatacaaacactcttccagtaacctctctcaactccacaccttcaatttctccgtcgaccatcacagtcggttttctgaac |
8884996 |
T |
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| Q |
550 |
aaaaatgccagaaaatcgattttggtggccgatggtttgaggcgggtggtgtatgttcgggcta |
613 |
Q |
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| T |
8884995 |
aaacatgtcagaaaaccgattgtgttggccgatggtttgaggcgggtggtgtatgttcaggcta |
8884932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 8884201 - 8884141
Alignment:
| Q |
232 |
tgttccgcagctaccaaattcgtggttggatttatggttcggcaggtatacatcctttgcc |
292 |
Q |
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||||| ||||||| ||| |||||||| ||||| |||||| ||||||||||||||||||| |
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| T |
8884201 |
tgttctgcagctaataaactcgtggtttgatttgtggttcttcaggtatacatcctttgcc |
8884141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 1e-52; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 450 - 607
Target Start/End: Complemental strand, 45074120 - 45073963
Alignment:
| Q |
450 |
aaacctcaaccaacttctccacataaacacacttccagtaacctctctcaactccacaccttcaattactccatcgaccatcacattcggttttcagagt |
549 |
Q |
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|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||| |
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| T |
45074120 |
aaacctcaactaacttctccacataaacacacttccagtaacctctctcaactccacaccttcaatttctccattgaccatcacattcggttttctgagc |
45074021 |
T |
|
| Q |
550 |
aaaaatgccagaaaatcgattttggtggccgatggtttgaggcgggtggtgtatgttc |
607 |
Q |
| |
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||| ||||||||| | ||||| || ||||||||||||| |||||| ||| |||||||| |
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| T |
45074020 |
aaacatgccagaagaccgattgtgttggccgatggttttaggcggatggcgtatgttc |
45073963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 213 - 383
Target Start/End: Complemental strand, 45074363 - 45074187
Alignment:
| Q |
213 |
atgctagttaacaaaactatgttccgcagctaccaaattcgtggttggatttatggttcggcaggtatacatcctt------------tgccatctaccg |
300 |
Q |
| |
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||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||| || | |||||||||||| | |||||||| |
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| T |
45074363 |
atgctagttaacaaaactatgttccacagctaacaaattcgtggttggattcatggtttggtaagtatacatccttaattctcaaaagagatatctaccg |
45074264 |
T |
|
| Q |
301 |
ttttgtttcttaggacacaatcaaatcgatctcaataaatccacagcatccatgtttcactccatccatcattctcaataaac |
383 |
Q |
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|||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
45074263 |
ttttgtttcttatg--acaatcaa----atctcaataaatccacagcatccatgtttcactccatccattactctcaataaac |
45074187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 45073605 - 45073546
Alignment:
| Q |
83 |
gacaatgatttgtgtttcgatgccaacttatgatgttctgcttattatagatgttaactt |
142 |
Q |
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||||||||||||||||| || | ||||||| |||||||||||||||| || |||||||| |
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| T |
45073605 |
gacaatgatttgtgtttggaagggaacttatcatgttctgcttattattgacgttaactt |
45073546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 450 - 557
Target Start/End: Complemental strand, 4341809 - 4341702
Alignment:
| Q |
450 |
aaacctcaaccaacttctccacataaacacacttccagtaacctctctcaactccacaccttcaattactccatcgaccatcacattcggttttcagagt |
549 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||| ||||||||| | ||| ||||| ||| |
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| T |
4341809 |
aaacctcaaccaacttctccacacaaacacccttccagtaacctctctcaactccacaacttcaatttctccaccgaccatcagagtcgattttctgagc |
4341710 |
T |
|
| Q |
550 |
aaaaatgc |
557 |
Q |
| |
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||| |||| |
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| T |
4341709 |
aaacatgc |
4341702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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