View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_low_40 (Length: 233)
Name: NF17909_low_40
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 34018061 - 34018283
Alignment:
| Q |
2 |
gtagttatttaaaaactggtccta-gccaaaatctaccacgctacatttgataacttcccaatattatatttcgccaacttctcggaactgctactcact |
100 |
Q |
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| T |
34018061 |
gtagttatttaaaaactggtcctaagccaaaatctaccacgctacatttcataacttcccaatattataactcgccaacttctcggaactgctactcact |
34018160 |
T |
|
| Q |
101 |
tgagaaattatcatcaatggcaaacaaacgcgaag------atagtcatgacgatgaaatttcaagtgttgaagaaggaaaccctaacgtcatgcaactt |
194 |
Q |
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||||||||||||||||||||| |||||||| |||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34018161 |
tgagaaattatcatcaatggccaacaaacgtgaagacattcatgatcatgacgatgaactttcaagtgttgaagaaggaaaccctaacgtcatgcaactt |
34018260 |
T |
|
| Q |
195 |
tgttgttcatcaaacaatgctat |
217 |
Q |
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||||||||||||||||||||||| |
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| T |
34018261 |
tgttgttcatcaaacaatgctat |
34018283 |
T |
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