View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_low_42 (Length: 227)
Name: NF17909_low_42
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 6 - 155
Target Start/End: Complemental strand, 27756687 - 27756538
Alignment:
| Q |
6 |
agtataatcccacctgataatccacaccagttgttgtaacaagtcgaaaaaatcctaagaagataagtagactagatgaaactattgcagtcttccaatt |
105 |
Q |
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| T |
27756687 |
agtataatcctacctgataatccacaccagttgttgtaacaagtcgaaaaaatcctaagaagataagtggactagatgaaactattgcagtcttccaatt |
27756588 |
T |
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| Q |
106 |
tctgaaacaagtaagaaatgatgttatcataggaaagtagaatacgatat |
155 |
Q |
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| T |
27756587 |
tctgaagcaagcaagaaatgatgttataagaggaaactagaatacaatat |
27756538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 27756441 - 27756371
Alignment:
| Q |
157 |
tcatgttaatgatgcttctttgcctattgtatgagctagttgaaaattccctaaagtattaccattagaaa |
227 |
Q |
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| T |
27756441 |
tcatgttaataatgcttctttgcctattgtatgagctagttgaaaattccccaaagtattaccattagaaa |
27756371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 24167560 - 24167465
Alignment:
| Q |
8 |
tataatcccacctgataatccacaccagttgttgtaacaagt-cgaaaaaatcctaagaagataagtagactagatgaaactattgcagtcttcca |
102 |
Q |
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| T |
24167560 |
tataatcccacctgataatccacaccaattgttgtaacaagtaaaaaaaaatcctaagaagataagtagtctacaagaagctactgcaatcttcca |
24167465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 46225778 - 46225874
Alignment:
| Q |
8 |
tataatcccacctgataatccacaccagttgttgtaacaagtcgaaaaaatcctaagaagataagt--agactagatgaaactattgcagtcttcca |
102 |
Q |
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||||||||||||||||||||||||||| ||||||||||| || | ||||||| |||||||||||| |||||| ||| ||||| |||| ||||||| |
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| T |
46225778 |
tataatcccacctgataatccacaccaattgttgtaacaggttaagaaaatcccaagaagataagtggagactacatggaactactgcaatcttcca |
46225874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 46225904 - 46225974
Alignment:
| Q |
157 |
tcatgttaatgatgcttctttgcctattgtatgagctagttgaaaattccctaaagtattaccattagaaa |
227 |
Q |
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|||||||||| |||||| || |||||||||||||||||| |||||||||||| ||||||| ||||||| |
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| T |
46225904 |
tcatgttaataatgctttctttcctattgtatgagctagtaaaaaattccctaacatattacctttagaaa |
46225974 |
T |
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