View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17909_low_5 (Length: 635)

Name: NF17909_low_5
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17909_low_5
NF17909_low_5
[»] chr7 (10 HSPs)
chr7 (35-621)||(21235852-21236448)
chr7 (50-110)||(2352157-2352217)
chr7 (52-119)||(3401044-3401112)
chr7 (59-138)||(13253929-13254008)
chr7 (50-119)||(11466925-11466994)
chr7 (51-111)||(22334175-22334235)
chr7 (50-113)||(9687104-9687169)
chr7 (61-101)||(8923216-8923256)
chr7 (51-110)||(9974230-9974290)
chr7 (51-87)||(10925075-10925111)
[»] chr1 (9 HSPs)
chr1 (51-121)||(23420500-23420570)
chr1 (57-132)||(15415901-15415976)
chr1 (59-119)||(33175517-33175577)
chr1 (62-119)||(19256834-19256891)
chr1 (145-218)||(15571586-15571656)
chr1 (148-210)||(30743511-30743574)
chr1 (62-121)||(31318436-31318495)
chr1 (152-224)||(12484937-12485010)
chr1 (77-118)||(14932257-14932298)
[»] chr3 (5 HSPs)
chr3 (57-138)||(25189331-25189412)
chr3 (58-134)||(22991561-22991637)
chr3 (50-118)||(26419958-26420028)
chr3 (145-218)||(22991671-22991744)
chr3 (51-119)||(25918111-25918180)
[»] chr5 (5 HSPs)
chr5 (58-138)||(12563984-12564064)
chr5 (63-110)||(20695944-20695991)
chr5 (51-120)||(24512757-24512826)
chr5 (61-110)||(15692775-15692824)
chr5 (145-266)||(19443416-19443537)
[»] chr2 (10 HSPs)
chr2 (61-132)||(14962582-14962653)
chr2 (139-224)||(15453474-15453559)
chr2 (162-249)||(29770154-29770240)
chr2 (58-110)||(23854076-23854128)
chr2 (60-111)||(25461228-25461279)
chr2 (50-122)||(17883472-17883542)
chr2 (62-119)||(21243241-21243298)
chr2 (50-113)||(31000579-31000644)
chr2 (165-249)||(20488494-20488577)
chr2 (59-87)||(31275298-31275326)
[»] chr4 (11 HSPs)
chr4 (59-132)||(25367684-25367757)
chr4 (59-121)||(24912163-24912225)
chr4 (50-121)||(30797668-30797740)
chr4 (147-256)||(13273454-13273563)
chr4 (66-119)||(19085357-19085410)
chr4 (52-144)||(32022896-32022988)
chr4 (61-111)||(8926421-8926471)
chr4 (50-113)||(13553481-13553546)
chr4 (50-110)||(19602952-19603013)
chr4 (63-119)||(18370822-18370878)
chr4 (58-120)||(22219913-22219977)
[»] chr6 (8 HSPs)
chr6 (51-119)||(16174370-16174438)
chr6 (145-249)||(22557984-22558089)
chr6 (141-249)||(3407688-3407796)
chr6 (51-138)||(9395445-9395533)
chr6 (147-224)||(22558554-22558632)
chr6 (147-249)||(20975152-20975256)
chr6 (149-244)||(21604785-21604881)
chr6 (51-110)||(22263586-22263646)
[»] chr8 (4 HSPs)
chr8 (62-132)||(13528979-13529049)
chr8 (62-132)||(13618518-13618588)
chr8 (51-87)||(18790062-18790098)
chr8 (51-83)||(28075673-28075705)
[»] scaffold0999 (1 HSPs)
scaffold0999 (59-120)||(2849-2910)


Alignment Details
Target: chr7 (Bit Score: 497; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 35 - 621
Target Start/End: Complemental strand, 21236448 - 21235852
Alignment:
Q  35 aattaggtgaagcactcaaatagtaacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaattaacataatatatttaa 134  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21236448 aattaggtgaagcactcaaatagtaacaagtaataaagtaataagttatcgtctccacagaaattgtcgttcaacttagcaattaacataatatatttaa 21236349  T
Q  135 gtaataacaggttttttaattgtcctacacaatgcaagattagattgtttgatttagatgtttaacggtgattagggtttccttaaatccaatctacctt 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  21236348 gtaataacaggttttttaattgtcctacacaatgcaagattagattatttgatttagatgtttaacggtgattagggtttccttaaatctcatctacctt 21236249  T
Q  235 attttttggaattaattaggttagtttttagtctatgacaa--------taagagagtatgacacgaccctatgatgtaacagtaggaagttcgagaata 326  Q
    |||| |||||||||| |||||||||||||||| ||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21236248 atttgttggaattaactaggttagtttttagtttatgacctgccttatttaagagagtatgacacgaccctatgatgtaacagtaggaagttcgagaata 21236149  T
Q  327 attagaaaattgatcacacaaaacgtggtcaacaacaaagaaaccttcattggcaagcctatcaacacacat--tatcttccctataaaagtgagtgatt 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||||| ||||    
T  21236148 attagaaaattgatcacacaaaacgtggtcaacaacaaagaaacctgcattggcaagcctatcaactcacatattatcttccctataaaagtgagagatt 21236049  T
Q  425 gtcgtctaaagtttctaatgatattgaaagaaaatcattaacaataagattggcatgatacaaaaagtgttatattatttttctttctcttcttcttcga 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21236048 gtcgtctaaagtttctaatgatattgaaagaaaatcattaacaataagattggcatgatacaaaaagtgttatattatttttctttctcttcttcttcga 21235949  T
Q  525 caataaggatatctgatgacacaaacctattggttaaattttttggtaaattacatcgacattaatcatcttttattccgtgattggtgtataccat 621  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  21235948 caataaggatatctgatgacacaaacctattggttaaattttttggtaaattacatcgacattaatcatctttgattccatgattggtgtataccat 21235852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 2352157 - 2352217
Alignment:
Q  50 tcaaatagtaacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaact 110  Q
    |||||| |||||||||||||||||||||||||||| || |||||   ||||||||||||||    
T  2352157 tcaaatcgtaacaagtaataaagtagtaagttatcatctccacatggattgtcgttcaact 2352217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 3401112 - 3401044
Alignment:
Q  52 aaatagtaacaagtaataaagtagtaagtt-atcgtcgccacagaaattgtcgttcaacttagcaatta 119  Q
    |||| |||||||||||||||||||||| || |||||| ||| |  ||||||||||||||||||||||||    
T  3401112 aaatcgtaacaagtaataaagtagtaattttatcgtctccatatgaattgtcgttcaacttagcaatta 3401044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 13254008 - 13253929
Alignment:
Q  59 aacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaattaacataatatatttaagtaa 138  Q
    |||||||||||||||||||||||||||||  || |  ||||||| ||||||||| |||| |||| ||| ||||| |||||    
T  13254008 aacaagtaataaagtagtaagttatcgtcttcagaagaattgtcattcaacttaacaataaacagaatttatttgagtaa 13253929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 11466925 - 11466994
Alignment:
Q  50 tcaaatagtaacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 119  Q
    |||||| |||| |||||||||||||||| ||||| ||| |||||   |||||| ||||||||||||||||    
T  11466925 tcaaatcgtaagaagtaataaagtagtaggttattgtctccacatggattgtcattcaacttagcaatta 11466994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 22334175 - 22334235
Alignment:
Q  51 caaatagtaacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaactt 111  Q
    ||||| ||| |||||||||||||||||||||||| ||  |||| |||||||| ||||||||    
T  22334175 caaattgtatcaagtaataaagtagtaagttatcatcttcacataaattgtcattcaactt 22334235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 9687104 - 9687169
Alignment:
Q  50 tcaaatagtaacaagtaataaagtagtaag-ttatcg-tcgccacagaaattgtcgttcaacttag 113  Q
    |||||| |||| |||||||||||||||||| |||||| ||  |||| |||||||||||||||||||    
T  9687104 tcaaatcgtaataagtaataaagtagtaagtttatcgttccacacaaaaattgtcgttcaacttag 9687169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 8923216 - 8923256
Alignment:
Q  61 caagtaataaagtagtaagttatcgtcgccacagaaattgt 101  Q
    ||||||||||||||||||||||||||| ||| | |||||||    
T  8923216 caagtaataaagtagtaagttatcgtctccatataaattgt 8923256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 9974290 - 9974230
Alignment:
Q  51 caaatagtaacaagtaataaagtagtaag-ttatcgtcgccacagaaattgtcgttcaact 110  Q
    ||||| |||||| |||||||||||||||| |||||||  | |||| |||||||||||||||    
T  9974290 caaatggtaacatgtaataaagtagtaagtttatcgtttctacaggaattgtcgttcaact 9974230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 10925111 - 10925075
Alignment:
Q  51 caaatagtaacaagtaataaagtagtaagttatcgtc 87  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  10925111 caaatcgtatcaagtaataaagtagtaagttatcgtc 10925075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 23420500 - 23420570
Alignment:
Q  51 caaatagtaacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaattaac 121  Q
    ||||| ||||||||||||||||||||||||||||||| |||||   |||||||||||||||||||||||||    
T  23420500 caaatcgtaacaagtaataaagtagtaagttatcgtctccacaaggattgtcgttcaacttagcaattaac 23420570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 15415901 - 15415976
Alignment:
Q  57 gtaacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaattaacataatatattt 132  Q
    |||||||||||||||  |||||||||||||| ||| ||| |||||||||||||||||||||||||| ||| |||||    
T  15415901 gtaacaagtaataaaacagtaagttatcgtctccatagagattgtcgttcaacttagcaattaacaaaatttattt 15415976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 33175517 - 33175577
Alignment:
Q  59 aacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 119  Q
    ||||||||||||| |||||||||||| || ||||| | |||||||||||||||||||||||    
T  33175517 aacaagtaataaaatagtaagttatcttctccacatagattgtcgttcaacttagcaatta 33175577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 19256834 - 19256891
Alignment:
Q  62 aagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 119  Q
    |||||||||||||||||||||||||  |||||  |||||||||||||||  |||||||    
T  19256834 aagtaataaagtagtaagttatcgtatccacatgaattgtcgttcaactcggcaatta 19256891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 15571586 - 15571656
Alignment:
Q  145 gttttttaattgtcctacacaatgcaagattagattgtttgatttagatgtttaacggtgattagggtttcctt 218  Q
    |||||||||||||||| ||||||||| |||||    |||||||| |||||||||||   |||||||||||||||    
T  15571586 gttttttaattgtcctgcacaatgcatgatta---agtttgattcagatgtttaacaacgattagggtttcctt 15571656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 30743511 - 30743574
Alignment:
Q  148 ttttaattgtcctacacaatgcaagatt-agattgtttgatttagatgtttaacggtgattagg 210  Q
    ||||||||||||||| |||||||||||| || ||  |||||||||| ||||||||| |||||||    
T  30743511 ttttaattgtcctacccaatgcaagattaagttttgttgatttagaagtttaacggcgattagg 30743574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 31318436 - 31318495
Alignment:
Q  62 aagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaattaac 121  Q
    |||||||||||||||||||||||||| |||||    ||||||||||||  ||||||||||    
T  31318436 aagtaataaagtagtaagttatcgtctccacatggtttgtcgttcaacggagcaattaac 31318495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 12484937 - 12485010
Alignment:
Q  152 aattgtcctacacaatgcaagattagattgtt-tgatttagatgtttaacggtgattagggtttccttaaatcc 224  Q
    ||||| ||||||||||||| |||||| || || ||||| ||||| |||||||  |||||||||||||| |||||    
T  12484937 aattgccctacacaatgcacgattaggtttttgtgattcagatgattaacggctattagggtttccttgaatcc 12485010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 14932257 - 14932298
Alignment:
Q  77 aagttatcgtcgccacagaaattgtcgttcaacttagcaatt 118  Q
    ||||||||||| ||||| | ||||||||||||||||||||||    
T  14932257 aagttatcgtctccacaaagattgtcgttcaacttagcaatt 14932298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 25189412 - 25189331
Alignment:
Q  57 gtaacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaattaacataatatatttaagtaa 138  Q
    |||||||||||||||||  |||||| ||||| ||||||| |||||||||||||||||||||||||  ||| ||||| |||||    
T  25189412 gtaacaagtaataaagtgataagttctcgtctccacagagattgtcgttcaacttagcaattaacgaaatttatttgagtaa 25189331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 22991561 - 22991637
Alignment:
Q  58 taacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaattaacataatatatttaa 134  Q
    ||||||||||||||||||||| |||||  | |||||  |||| ||||||||||||||||||| |||||| |||||||    
T  22991561 taacaagtaataaagtagtaaattatcaactccacatgaattttcgttcaacttagcaattatcataatttatttaa 22991637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 26420028 - 26419958
Alignment:
Q  50 tcaaatagtaacaagtaataaagtagtaagttatc--gtcgccacagaaattgtcgttcaacttagcaatt 118  Q
    |||||| ||||||||||||||| ||||||||||||  ||| ||||| | | ||| ||||||||||||||||    
T  26420028 tcaaatcgtaacaagtaataaaatagtaagttatcgtgtctccacaaagactgttgttcaacttagcaatt 26419958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 22991671 - 22991744
Alignment:
Q  145 gttttttaattgtcctacacaatgcaagattagattgtttgatttagatgtttaacggtgattagggtttcctt 218  Q
    |||||||||||||| | || |||||  |||||| |||||||||| ||| ||||||||| ||||| ||| |||||    
T  22991671 gttttttaattgtcatgcataatgcgcgattaggttgtttgattaagaggtttaacggcgattaaggtatcctt 22991744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 25918111 - 25918180
Alignment:
Q  51 caaatagtaacaagtaataaagtagtaag-ttatcgtcgccacagaaattgtcgttcaacttagcaatta 119  Q
    ||||| |||||||||||||| |||||||| ||||||||  || ||  ||||||||||||||||| |||||    
T  25918111 caaattgtaacaagtaataacgtagtaagtttatcgtcttcatagggattgtcgttcaacttagaaatta 25918180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 12563984 - 12564064
Alignment:
Q  58 taacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaattaacataatatatttaagtaa 138  Q
    |||||| |||||||||| |||||||||||| | |||  ||||||||||||||||||||||||||| ||| |||||| ||||    
T  12563984 taacaaataataaagtaataagttatcgtctctacatgaattgtcgttcaacttagcaattaacaaaatttatttatgtaa 12564064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 20695991 - 20695944
Alignment:
Q  63 agtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaact 110  Q
    ||||||||||||||||||||||||| ||||||  ||||||||||||||    
T  20695991 agtaataaagtagtaagttatcgtctccacagggattgtcgttcaact 20695944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 24512826 - 24512757
Alignment:
Q  51 caaatagtaacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaattaa 120  Q
    ||||| |||| ||||| ||||||||||||||||||||   | ||| |||||||||||||| |||||||||    
T  24512826 caaatcgtaataagtattaaagtagtaagttatcgtctatatagagattgtcgttcaactaagcaattaa 24512757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 15692775 - 15692824
Alignment:
Q  61 caagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaact 110  Q
    ||||||||||| |||||||||||||||  |||||| |||||| |||||||    
T  15692775 caagtaataaaatagtaagttatcgtcttcacagagattgtcattcaact 15692824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 266
Target Start/End: Original strand, 19443416 - 19443537
Alignment:
Q  145 gttttttaattgtcctacacaatgcaagattagattgtttgatttagatgtttaacggtgattagggtttccttaaatccaatctaccttattttttgga 244  Q
    |||||||||||||| | |||||| | ||||| | ||| ||| || | ||||||||    |||||||||||||||||| ||  |||||||||||| || ||    
T  19443416 gttttttaattgtcattcacaatacgagatttggttgcttgtttcatatgtttaataacgattagggtttccttaaaccccctctaccttatttgtttga 19443515  T
Q  245 attaattaggttagtttttagt 266  Q
    ||||| | |||| ||| |||||    
T  19443516 attaactcggtttgttgttagt 19443537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 14962582 - 14962653
Alignment:
Q  61 caagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaattaacataatatattt 132  Q
    ||||||||||||||||||||||| ||   ||||  ||||||||||||||||||||||||||||||| |||||    
T  14962582 caagtaataaagtagtaagttattgttttcacatgaattgtcgttcaacttagcaattaacataatttattt 14962653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 15453474 - 15453559
Alignment:
Q  139 taacaggttttttaattgtcctacacaatgcaagattagattgtttgatttagatgtttaacggtgattagggtttccttaaatcc 224  Q
    ||||| |||| ||||||||||||||||||| |||||||  |||||||||| | |||||||| || ||||| | ||||||| |||||    
T  15453474 taacaagtttattaattgtcctacacaatggaagattaagttgtttgattcaaatgtttaagggagattaagatttccttgaatcc 15453559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 29770240 - 29770154
Alignment:
Q  162 cacaatgcaagattagattgtttgatttagatgtttaacggtgattagggtttccttaaatccaatctaccttattttttggaattaa 249  Q
    ||||||||||||||||||| |||||||  ||||||||||| |||||||||| ||||| ||||   |||| ||| ||| ||||||||||    
T  29770240 cacaatgcaagattagatt-tttgattcggatgtttaacgatgattagggtatccttgaatctcctctatcttctttgttggaattaa 29770154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 23854076 - 23854128
Alignment:
Q  58 taacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaact 110  Q
    ||||||||||||||||||||| |||| ||| ||||||  ||||||||||||||    
T  23854076 taacaagtaataaagtagtaaattattgtctccacagggattgtcgttcaact 23854128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 25461279 - 25461228
Alignment:
Q  60 acaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaactt 111  Q
    |||||||||||||||||||||||||||| ||| |   |||||||||||||||    
T  25461279 acaagtaataaagtagtaagttatcgtctccaaatggattgtcgttcaactt 25461228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 17883472 - 17883542
Alignment:
Q  50 tcaaatagtaacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaattaaca 122  Q
    |||||| |||||||||||||||||   ||||||||||| ||| |  |||||||||||||||||  ||||||||    
T  17883472 tcaaatcgtaacaagtaataaagtg--aagttatcgtctccatatgaattgtcgttcaacttattaattaaca 17883542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 21243298 - 21243241
Alignment:
Q  62 aagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 119  Q
    |||||||||||||||||||||||| | ||| | | |||||||||||||| || |||||    
T  21243298 aagtaataaagtagtaagttatcgactccataaacattgtcgttcaactcagtaatta 21243241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 31000644 - 31000579
Alignment:
Q  50 tcaaatagtaacaagtaataaagtagtaag-ttatc-gtcgccacagaaattgtcgttcaacttag 113  Q
    |||||| ||||||||||||||||||||||| |||||  || ||||||  |||||||||||||||||    
T  31000644 tcaaattgtaacaagtaataaagtagtaagtttatcattctccacagggattgtcgttcaacttag 31000579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 20488494 - 20488577
Alignment:
Q  165 aatgcaagattagattgtttgatttagatgtttaacggtgattagggtttccttaaatccaatctaccttattttttggaattaa 249  Q
    |||||||||||| ||| | | ||| |||| ||||||| |||||||||| ||||||||||| |  |||||| ||| ||||||||||    
T  20488494 aatgcaagattatatt-tgtaattcagatatttaacgatgattagggtatccttaaatcctacgtaccttctttattggaattaa 20488577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 87
Target Start/End: Complemental strand, 31275326 - 31275298
Alignment:
Q  59 aacaagtaataaagtagtaagttatcgtc 87  Q
    |||||||||||||||||||||||||||||    
T  31275326 aacaagtaataaagtagtaagttatcgtc 31275298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 25367757 - 25367684
Alignment:
Q  59 aacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaattaacataatatattt 132  Q
    ||||||||||||||||||||||||  ||| |||||  |||||||||||||||||| |||||||| ||| |||||    
T  25367757 aacaagtaataaagtagtaagttacagtctccacatgaattgtcgttcaacttagaaattaacaaaatttattt 25367684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 24912163 - 24912225
Alignment:
Q  59 aacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaattaac 121  Q
    ||||||||||||||||| |||||||| || ||||| ||||||||||| || ||||||||||||    
T  24912163 aacaagtaataaagtagcaagttatcatctccacataaattgtcgtttaaattagcaattaac 24912225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 30797740 - 30797668
Alignment:
Q  50 tcaaatagtaacaagtaataaagtagtaag-ttatcgtcgccacagaaattgtcgttcaacttagcaattaac 121  Q
    |||||| ||||||||||||||||||||||| |||||||| | |||   ||||| |||||||||||||||||||    
T  30797740 tcaaatcgtaacaagtaataaagtagtaagtttatcgtctcaacaaggattgttgttcaacttagcaattaac 30797668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 147 - 256
Target Start/End: Original strand, 13273454 - 13273563
Alignment:
Q  147 tttttaattgtcctacacaatgcaagattagattgtttgatttagatgtttaacggtgattagggtttccttaaatccaatctaccttattttttggaat 246  Q
    |||| ||||||| | ||||| |||||| |||  |||| ||||||||||||||||||  |||||||| ||||| ||||   |||||||| ||| ||||||     
T  13273454 ttttgaattgtcttgcacaaagcaagagtaggctgttcgatttagatgtttaacggcaattagggtatccttgaatctcctctaccttctttgttggaag 13273553  T
Q  247 taattaggtt 256  Q
    ||| ||||||    
T  13273554 taactaggtt 13273563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 19085357 - 19085410
Alignment:
Q  66 aataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 119  Q
    ||||||||||||||||| |||| |||||  |||||||||||| |||||||||||    
T  19085357 aataaagtagtaagttaccgtctccacatgaattgtcgttcagcttagcaatta 19085410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 144
Target Start/End: Complemental strand, 32022988 - 32022896
Alignment:
Q  52 aaatagtaacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaattaacataatatatttaagtaataacag 144  Q
    |||| |||||||||||||||||| ||||||||| || ||||| | |||||  ||| | ||||||||||||  ||| |||| |||||| |||||    
T  32022988 aaatcgtaacaagtaataaagtaataagttatcttctccacatagattgttcttctatttagcaattaacgaaatttattaaagtaaaaacag 32022896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 8926471 - 8926421
Alignment:
Q  61 caagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaactt 111  Q
    ||||||||||||||| ||||||||||| ||| ||  |||||||||||||||    
T  8926471 caagtaataaagtagcaagttatcgtctccatagggattgtcgttcaactt 8926421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 13553481 - 13553546
Alignment:
Q  50 tcaaatagtaacaagtaataaagtagtaag-ttatcg-tcgccacagaaattgtcgttcaacttag 113  Q
    |||||| |||| |||||||||||||||||| |||||| ||  |||| |||||||||||||||||||    
T  13553481 tcaaatcgtaataagtaataaagtagtaagtttatcgttccacacaaaaattgtcgttcaacttag 13553546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 19603013 - 19602952
Alignment:
Q  50 tcaaatagtaacaagtaataaagtagtaagtt-atcgtcgccacagaaattgtcgttcaact 110  Q
    |||||||||| |||||||||||| |||||||| |||||| ||||||  ||| ||||||||||    
T  19603013 tcaaatagtaccaagtaataaagcagtaagttaatcgtctccacagggattatcgttcaact 19602952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 18370822 - 18370878
Alignment:
Q  63 agtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 119  Q
    ||||||||||||||||||||||||||| | | | || |||  |||||||||||||||    
T  18370822 agtaataaagtagtaagttatcgtcgctataaagatcgtccatcaacttagcaatta 18370878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 22219977 - 22219913
Alignment:
Q  58 taacaagtaataaagtagtaag-ttatcg-tcgccacagaaattgtcgttcaacttagcaattaa 120  Q
    |||||||||||||||||||||| |||||| || || || | ||||||||||||||||| ||||||    
T  22219977 taacaagtaataaagtagtaagtttatcgttctccgcaaagattgtcgttcaacttagtaattaa 22219913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 16174370 - 16174438
Alignment:
Q  51 caaatagtaacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 119  Q
    ||||| ||||||||||||||||||||| ||||||||  ||||| | ||||| |||||||||||||||||    
T  16174370 caaattgtaacaagtaataaagtagtaggttatcgtgtccacatagattgttgttcaacttagcaatta 16174438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 22557984 - 22558089
Alignment:
Q  145 gttttttaattgtcctacacaatgcaagattagatt-gtttgatttagatgtttaacggtgattagggtttccttaaatccaatctaccttattttttgg 243  Q
    |||||||||||||| | |||||||| |||||||||| || ||||| | ||||||||||||||||||||| | ||| ||||| || | | || ||| ||||    
T  22557984 gttttttaattgtcgtgcacaatgcgagattagattggtctgattcaaatgtttaacggtgattagggtattcttgaatcccatttcctttctttgttgg 22558083  T
Q  244 aattaa 249  Q
    ||||||    
T  22558084 aattaa 22558089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 249
Target Start/End: Original strand, 3407688 - 3407796
Alignment:
Q  141 acaggttttttaattgtcctacacaatgcaagattagattgtttgatttagatgtttaacggtgattagggtttccttaaatccaatctaccttattttt 240  Q
    |||||||| ||||||||| | |||||||| ||||||   || |||||| | |||| |||||| ||||||||||||||| | |||  |||||||| ||| |    
T  3407688 acaggtttattaattgtcttgcacaatgcgagattatggtgcttgattcaaatgtataacggcgattagggtttccttcactcccctctaccttctttat 3407787  T
Q  241 tggaattaa 249  Q
    || ||||||    
T  3407788 tgaaattaa 3407796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 138
Target Start/End: Original strand, 9395445 - 9395533
Alignment:
Q  51 caaatagtaacaagtaataaagtagtaag-ttatcgtcgccacagaaattgtcgttcaacttagcaattaacataatatatttaagtaa 138  Q
    ||||| |||||||||||| |||||||||| |||||||  |||||   |||||||||||| ||||||||||||  ||| ||||| |||||    
T  9395445 caaatcgtaacaagtaatgaagtagtaagtttatcgtaaccacatggattgtcgttcaatttagcaattaacggaatttatttgagtaa 9395533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 22558554 - 22558632
Alignment:
Q  147 tttttaattgtcctacacaatgcaagattagattg-tttgatttagatgtttaacggtgattagggtttccttaaatcc 224  Q
    ||||| |||||||| |||||||| | |||||  || ||||||| |||||||||| |||||||||||| ||||| |||||    
T  22558554 ttttttattgtcctgcacaatgcgatattaggctgatttgattaagatgtttaaaggtgattagggtatccttgaatcc 22558632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 20975152 - 20975256
Alignment:
Q  147 tttttaattgtcctacacaatgcaagatta-gattgtttgatttagatgtttaacggtgattagggtttccttaaatcc-aatctaccttattttttgga 244  Q
    |||| ||||||||| ||||||||||||||| | |||||||||| ||| | |||| || |||||| ||||| || |||||   |||||||| ||| |||||    
T  20975152 ttttgaattgtccttcacaatgcaagattaggtttgtttgattcagaagattaatggcgattagagtttcattgaatcctcctctaccttctttgttgga 20975251  T
Q  245 attaa 249  Q
    |||||    
T  20975252 attaa 20975256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 244
Target Start/End: Original strand, 21604785 - 21604881
Alignment:
Q  149 tttaattgtcctacacaatgcaagattagattg-tttgatttagatgtttaacggtgattagggtttccttaaatccaatctaccttattttttgga 244  Q
    |||||||||| | | |||||  |||||| |||| |||||||||||||| ||||||||||||| || ||||| ||| |  ||| |||||||| |||||    
T  21604785 tttaattgtcatgcccaatgtgagattaaattggtttgatttagatgtgtaacggtgattagagtgtccttgaattccctcttccttatttgttgga 21604881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 22263646 - 22263586
Alignment:
Q  51 caaatagtaacaagtaataaagtagtaagtt-atcgtcgccacagaaattgtcgttcaact 110  Q
    ||||| |||| ||| |||||||||||||||| || ||| ||||||| ||||||||||||||    
T  22263646 caaatcgtaataagcaataaagtagtaagtttattgtctccacagacattgtcgttcaact 22263586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 13528979 - 13529049
Alignment:
Q  62 aagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaattaacataatatattt 132  Q
    |||||||||||||||||||||||||| ||| |   |||||| ||||||  |||| |||||||||| |||||    
T  13528979 aagtaataaagtagtaagttatcgtctccatatggattgtcattcaacgaagcagttaacataatttattt 13529049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 13618518 - 13618588
Alignment:
Q  62 aagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaattaacataatatattt 132  Q
    |||||||||||||||||||||||||| ||| |   |||||| ||||||  |||| |||||||||| |||||    
T  13618518 aagtaataaagtagtaagttatcgtctccatatggattgtcattcaacgaagcagttaacataatttattt 13618588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 18790098 - 18790062
Alignment:
Q  51 caaatagtaacaagtaataaagtagtaagttatcgtc 87  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  18790098 caaatcgtatcaagtaataaagtagtaagttatcgtc 18790062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 28075705 - 28075673
Alignment:
Q  51 caaatagtaacaagtaataaagtagtaagttat 83  Q
    ||||| |||||||||||||||||||||||||||    
T  28075705 caaattgtaacaagtaataaagtagtaagttat 28075673  T

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Target: scaffold0999 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0999
Description:

Target: scaffold0999; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 2910 - 2849
Alignment:
Q  59 aacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaattaa 120  Q
    |||||||||||||  ||||  |||||||| ||||||| |||||||||||||  |||||||||    
T  2910 aacaagtaataaaacagtagattatcgtctccacagagattgtcgttcaacgaagcaattaa 2849  T

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