View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_low_6 (Length: 624)
Name: NF17909_low_6
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Original strand, 6885564 - 6886111
Alignment:
| Q |
1 |
caaacatgatccattggtgtaaca-tattgacaacggttctttacaaacaaaaacaaaaagtgtgtgcaagacttttcacgttcgcaccatagaattagc |
99 |
Q |
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| T |
6885564 |
caaacatgatccattggtgtaacactattgacaacggttctttacaaacaaaaacaaatagcgtgtgcaatacttttcacgtaagcaccatagaattagc |
6885663 |
T |
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| Q |
100 |
ccaaaaatttatgtgaggtttgagttgaacatatacatggaaaatgtagcatagatcgatacattaacaacacatatggtcgcattgaattactgtattt |
199 |
Q |
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| T |
6885664 |
ccaaaaatttatgtgaggtttgagttgaatatatacatggaaaatgtggcatagaccgatacatcaacaacacatatggttgcattgaattactgtattt |
6885763 |
T |
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| Q |
200 |
tctcgaattattattgatgccaacatagtgattactgattagtgattgagatggaagaaaatataataagttaggagaatacatttaaaaaatatacata |
299 |
Q |
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| T |
6885764 |
tctcgaattattattgatgccaacatagtgattaatgatta-------agatggaagaaaatataataagttaggagaatacatttaaaaaatatacata |
6885856 |
T |
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| Q |
300 |
cccggtgatattgcagcactaatttgcttggaggcagcatatatgtagcttacaagaggcattttcttgatgaacaattcacctaaggtaaggacagaag |
399 |
Q |
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| T |
6885857 |
cccggtgatattgcagcactaatttgcttggaggcagcatatatgtagcttacaagaggcattttcttgatgaacaattcacctaaggtaaggacagaag |
6885956 |
T |
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| Q |
400 |
ctcctaaccatgatgacataaaaattccaactaggaagatgaaagtgatggatgtaacaaatccgagacctgcccaattaatcaaattttgtaacatatg |
499 |
Q |
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| T |
6885957 |
ctcctaaccatgatgacataaaaattccaactaggaagatgaaagtgatggatgtaacaaatccgagacctgcccaattaatcaaattttgtaacatatg |
6886056 |
T |
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| Q |
500 |
atatgatatttcttattttcttgcaagagatatatatttgtattcaaccttaaaa |
554 |
Q |
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| T |
6886057 |
atatgatatttcttatttttttgcaagagatatatatttgtattcaaccttaaaa |
6886111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 568 - 610
Target Start/End: Original strand, 6886197 - 6886239
Alignment:
| Q |
568 |
ttgtattcaagtttatcaaatgaatgtatgccgcttgattttg |
610 |
Q |
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| T |
6886197 |
ttgtattcaagtttatcaaatgaatctatgccgcttgattttg |
6886239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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