View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_low_7 (Length: 622)
Name: NF17909_low_7
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 40724196 - 40723818
Alignment:
| Q |
1 |
cagagattatgtccaaaatggctggagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatctttattgatga |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40724196 |
cagagattatgtccaaactggctggagagagtgaaagcaatcttaggaaagcgtttgaagaagcagaaaagaatgcaccatccatcatctttattgatga |
40724097 |
T |
|
| Q |
101 |
aattgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatcccgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40724096 |
aattgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatcccgt |
40723997 |
T |
|
| Q |
201 |
gctcatgttattgtcatgggggccactaatcgccccaatagcattgacccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttc |
300 |
Q |
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| T |
40723996 |
gctcatgttattgtcatgggggccactaatcgccccaatagcattgacccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttc |
40723897 |
T |
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| Q |
301 |
cagatgaaattgggcgacttgaagtccttcgcatacataccaaaaacatgaagctctctgatgatgtaagttgggcatt |
379 |
Q |
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| T |
40723896 |
cagatgaaattgggcgacttgaagtccttcgcatacataccaaaaacatgaagctctctcatgatgtaagttggacatt |
40723818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 40665870 - 40666066
Alignment:
| Q |
1 |
cagagattatgtccaaaatggctggagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatcttta-ttgatg |
99 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40665870 |
cagagattatgtccaaactggctggagagagtgaaagcaatcttaggaaagcgtttgaagaagcagaaaagaatgcaccatccatcatctttatttgatg |
40665969 |
T |
|
| Q |
100 |
aaattgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatc |
196 |
Q |
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| T |
40665970 |
aaattgattctattgcacccaagcgggagaagacaaacggtgaagttgaaagaaggattgtctcacaacttctgactcttatggatgggctagaatc |
40666066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 474 - 603
Target Start/End: Original strand, 40666351 - 40666480
Alignment:
| Q |
474 |
atgatagttgcagtattaataagggttttcaatttcctcaaattttcagttgctcatttacgattttactctgtaggttgatttggagagaatttcaaaa |
573 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666351 |
atgatagctgcagtattaataaggtttttcaatttcctcaaattttcagttgctcatttacgattttactctgtaggttgatttggagagaatttcaaaa |
40666450 |
T |
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| Q |
574 |
aatactcatgggtatgttggtgctgacctt |
603 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
40666451 |
aatactcatgggtatgttggtgctgacctt |
40666480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 252 - 379
Target Start/End: Original strand, 40666102 - 40666229
Alignment:
| Q |
252 |
gcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgacttgaagtccttcgcatacataccaaaaacatga |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666102 |
gcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgacttgaagtccttcgcatacataccaaaaacatga |
40666201 |
T |
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| Q |
352 |
agctctctgatgatgtaagttgggcatt |
379 |
Q |
| |
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|||||||| |||||||||||||| |||| |
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| T |
40666202 |
agctctctcatgatgtaagttggacatt |
40666229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 499 - 603
Target Start/End: Complemental strand, 40723629 - 40723526
Alignment:
| Q |
499 |
ttttcaatttcctcaaattttcagttgctcatttacgattttactctgtaggttgatttggagagaatttcaaaaaatactcatgggtatgttggtgctg |
598 |
Q |
| |
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||||| ||||||||||||||||| | || ||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40723629 |
ttttcgatttcctcaaattttcattcgcacatttacgacttt-ctctgtaggttgatttggagagaatttcaaaagatactcatgggtatgttggtgctg |
40723531 |
T |
|
| Q |
599 |
acctt |
603 |
Q |
| |
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||||| |
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| T |
40723530 |
acctt |
40723526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 3 - 369
Target Start/End: Complemental strand, 41093021 - 41092655
Alignment:
| Q |
3 |
gagattatgtccaaaatggctggagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatctttattgatgaaa |
102 |
Q |
| |
|
||||| ||||| ||| | ||||| ||||||||||||||||| ||||| |||||||| ||||| || ||||||||||| |||||||||||||||||||| | |
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| T |
41093021 |
gagataatgtcgaaacttgctggtgagagtgaaagcaatctaaggaaggcatttgaggaagctgagaagaatgcaccttccatcatctttattgatgaga |
41092922 |
T |
|
| Q |
103 |
ttgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatcccgtgc |
202 |
Q |
| |
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| ||||| || || || ||||| || || || | ||||||||||| || |||||||| || ||||| |||| ||||||||||| || ||||| ||||| |
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| T |
41092921 |
tagattccatagctcctaagcgagagaaaactcacggtgaagtagagaggaggattgtctcccaactcttgacccttatggatggtcttaaatcacgtgc |
41092822 |
T |
|
| Q |
203 |
tcatgttattgtcatgggggccactaatcgccccaatagcattgacccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttcca |
302 |
Q |
| |
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||||| ||||| ||||| ||||| ||| | ||||||||||||||||| ||| | || |||||||| || ||||||||||| || ||||||||||||||| |
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| T |
41092821 |
acatgtaattgttatgggagccacaaataggcccaatagcattgaccctgcacttaggaggtttggaaggtttgatagggagattgatattggtgttcca |
41092722 |
T |
|
| Q |
303 |
gatgaaattgggcgacttgaagtccttcgcatacataccaaaaacatgaagctctctgatgatgtaa |
369 |
Q |
| |
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|| || ||||||| ||||| || ||||| || ||||| || || ||||| ||| | || ||||||| |
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| T |
41092721 |
gacgaggttgggcgtcttgaggttcttcgaattcatacaaagaatatgaaactcgccgaagatgtaa |
41092655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 9e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 27977299 - 27977635
Alignment:
| Q |
19 |
tggctggagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatctttattgatgaaattgattctattgcacc |
118 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| ||||| |||||||| || ||||||||||| || |||||||| |||||||| || || || ||||| || |
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| T |
27977299 |
tggctggtgagagtgaaagtaatctgaggaaggcattcgaagaagctgagaagaatgcaccctcaatcatcttcattgatgagatagactccattgctcc |
27977398 |
T |
|
| Q |
119 |
caagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatcccgtgctcatgttattgtcatg |
218 |
Q |
| |
|
||| |||| ||||| ||||||||||| || |||| |||||||| || || |||| || ||||||||||| ||||||||||| ||||| ||||| ||| |
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|
| T |
27977399 |
aaagagggagaagactaatggtgaagttgagcgaagaattgtttcccagctcttgaccctcatggatgggcttaaatcccgtgcacatgtaattgttatg |
27977498 |
T |
|
| Q |
219 |
ggggccactaatcgccccaatagcattgacccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgac |
318 |
Q |
| |
|
|| || || ||||| ||||||||||| ||||| || | | |||||||| || |||||| |||| || ||||||||||| ||||||||| |||| || | |
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| T |
27977499 |
ggagcaacaaatcgtcccaatagcatcgaccctgctcttcggaggtttggaaggtttgatcgggagattgatattggtgtaccagatgaagttggacgtc |
27977598 |
T |
|
| Q |
319 |
ttgaagtccttcgcatacataccaaaaacatgaagct |
355 |
Q |
| |
|
|||| || || ||||| ||||| ||||| |||||||| |
|
|
| T |
27977599 |
ttgaggttctccgcatccatacaaaaaatatgaagct |
27977635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 15690253 - 15690360
Alignment:
| Q |
76 |
caccatccatcatctttattgatgaaattgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgac |
175 |
Q |
| |
|
|||||| |||| |||||||||||||| ||||||||| || |||||| | || |||||| || |||||| || |||||||||||||||||| | ||| |
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| T |
15690253 |
caccattcatcttctttattgatgaatttgattctactgtacccaa--gagagaagacacgtgatgaagttgatagaaggattgtttcacaagtcttgaa |
15690350 |
T |
|
| Q |
176 |
tcttatggat |
185 |
Q |
| |
|
|||||||||| |
|
|
| T |
15690351 |
tcttatggat |
15690360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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