View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17909_low_8 (Length: 599)
Name: NF17909_low_8
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 311 - 582
Target Start/End: Complemental strand, 13650685 - 13650403
Alignment:
| Q |
311 |
acacacttatatcatgttaatactacttctttgtcagaaaataagtgnnnnnnngttaata-----------ctaactcgtaaatttatgtacttacagc |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
13650685 |
acacacttatatcatgttaatactacttctttgtcagaaaataagtgaaaaaaagttaatagtacgagcaaactaactcaaaaatttatgtacttacagc |
13650586 |
T |
|
| Q |
400 |
aacatgtgaaataatccgaggttgatgaagaggttttaggacggagaagatgagaagcgacaataataccgtaaatgcaattgaagttgcaatttccggt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13650585 |
aacatgtgaaataatccgaggttgatgaagaggttttaggacggagaagatgagaagcgacaataataccgtaaatgcaattgaagttgcaatttccggt |
13650486 |
T |
|
| Q |
500 |
aactcgcttttaaggacatttcgagtttgccatagatgactgggatcaaacacatttacatcataacatataggtgcgttctt |
582 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
13650485 |
aactcgcttttaaggacattttgagtttgccatagatgactgggatcaaacacatttacatcatagcatataggtgcattctt |
13650403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 380 - 571
Target Start/End: Complemental strand, 13656579 - 13656388
Alignment:
| Q |
380 |
taaatttatgtacttacagcaacatgtgaaataatccgaggttgatgaagaggttttaggacggagaagatgagaagcgacaataataccgtaaatgcaa |
479 |
Q |
| |
|
||||||||||||||||||| | || |||||| || ||| ||||||||||||||| | || | |||||| || | | ||||||||||| |||| |||| |
|
|
| T |
13656579 |
taaatttatgtacttacagtgatatatgaaatcatacgactttgatgaagaggtttaaagatgaagaagacgatacgagacaataatacgataaaggcaa |
13656480 |
T |
|
| Q |
480 |
ttgaagttgcaatttccggtaactcgcttttaaggacatttcgagtttgccatagatgactgggatcaaacacatttacatcataacatata |
571 |
Q |
| |
|
||| ||| |||||||| |||| ||||| |||||||||||||||||||||||||| ||| |||||||||| |||||||| | ||| |||||| |
|
|
| T |
13656479 |
ttgcagtcgcaatttcaggtagctcgcctttaaggacatttcgagtttgccataaatgtttgggatcaaaaacatttaccttatagcatata |
13656388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 13657215 - 13657118
Alignment:
| Q |
82 |
ggtcaaatgaatcactcattatagaaaagaatgagcaaataaaacatgatagagagtattagataatatggtaaatttagtgcatatttggattgaaaa |
180 |
Q |
| |
|
|||||||||||| |||| |||| |||||||||||||| |||||||||||||| | ||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13657215 |
ggtcaaatgaataactcgttatggaaaagaatgagcag-taaaacatgatagaaactataagataatatggtagatttagtgcatatttggattgaaaa |
13657118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University