View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_low_9 (Length: 565)
Name: NF17909_low_9
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 6e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 222 - 523
Target Start/End: Complemental strand, 34015998 - 34015695
Alignment:
| Q |
222 |
gcagtttataaagcttgggccaggaaaatgcttttg--gatca-tgggtcaaagtacaaatgggccacctgagttcgattatttaggcccaataccccac |
318 |
Q |
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| T |
34015998 |
gcagttcatatagcttggggcaggaaaatgctgttgtggatcaatgggtcaaactaaaaattggccatcttggttcgattatttaggcccaataccccac |
34015899 |
T |
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| Q |
319 |
aaacattctaaatgtacccctgaggtttcttatgtaggtgaacacgattacttagcaagattcgatgaaggcacaaatgaatctcgcaatgagaaaggag |
418 |
Q |
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| T |
34015898 |
aaacattctaaatgtacccctaaggtttcttttgtaggtgaagatgattacttagcaagattcgatgaaggcacaaatgaaactcgcaatgagaaaggag |
34015799 |
T |
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| Q |
419 |
tgatttcaaatgtgaaaatgacgaagggataaaaaatggctagtacaaaactggaaaaaagccaagaacactacctacttatgatctagactccgtacac |
518 |
Q |
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| T |
34015798 |
tgatttcaaatttgaaaatgacgaagggatcgaaaatggctaatgcaaaattggagaaaatccaag-acactacatacatatgatctagagtccttacac |
34015700 |
T |
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| Q |
519 |
aaatg |
523 |
Q |
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||||| |
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| T |
34015699 |
aaatg |
34015695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 34018036 - 34017950
Alignment:
| Q |
20 |
ggatatgcataaaataacggatacatttgattaagtcaagttaactagaaaaatctcctccaca-cataacccatatcaccacgtcat |
106 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||| |||||| ||||||| ||||||||||||||| |
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| T |
34018036 |
ggatatgcataaaataacggatatatt-gattaagtcaagttaactagagaaatctcttccacatcataaccaatatcaccacgtcat |
34017950 |
T |
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