View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1790_high_1 (Length: 612)
Name: NF1790_high_1
Description: NF1790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1790_high_1 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 13 - 612
Target Start/End: Complemental strand, 50910153 - 50909574
Alignment:
| Q |
13 |
cagcacagacagcgaatatcttgtcgtctttcttgccctgaatttcatgcacagacagcgaatatcttgtcatctttctcgccctgaacttcgtaaggga |
112 |
Q |
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| T |
50910153 |
cagcacagacagcgaatatcttgtcgtctttcttgccctgaatttcatgcacagacagcgaatatcttgtcatctttctcgccctgaacttcgtaaggga |
50910054 |
T |
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| Q |
113 |
aaggaacctggaagaactggctcctgttccagcaacaattaagtattagccatcccaaagcagtaaagacgcgtctaatagattaatacttgttggaaca |
212 |
Q |
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| T |
50910053 |
aaggaacctggaagaactggctcctgttccagcaacaattaagtattagccatcccaaagcagtaaagacgcgtctaatagattaatacttgttggaaca |
50909954 |
T |
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| Q |
213 |
ctatgtttttctaactcttgttccaacaatactacatagatagatgaagtcatcgtattacttgatcctctttttgaattattaccatgcattattgcta |
312 |
Q |
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| T |
50909953 |
ctatgtttttctaactcttgttccaacaatactacatagatagatgaagtcatcgtattacttgatcctctttttgaattattaccatgcattattgcta |
50909854 |
T |
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| Q |
313 |
aattgtattagagtagccatatttacaaatttactcacactttagcaagaccttgcgtagcgtaggtgtacttttgtttatgtctcttttgaattgggtt |
412 |
Q |
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| T |
50909853 |
aattgtattagagtagccatattttcaaatttactcacactttagcaagagcttgcgtagcgtaggtgtacttttgtttatgtctcttttgaattgggtt |
50909754 |
T |
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| Q |
413 |
gggtttaatcgtggatgtgtttagcctattttcaagttaaataaatctatgacacaacgacatgaaatttttcttccaccccttacatctcgtgcgcccc |
512 |
Q |
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| T |
50909753 |
ggg----------------tttagcctattttcaagt----taaatctatgacacaacgacatgaaatttttcttccaccccttacatctcgtgcgtccc |
50909674 |
T |
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| Q |
513 |
caaaattgatttataaatcaatcttaattcttacacatcttgattttggagtttgaaggtgccatatatatagttcaaacttctattgtgacaaagtgca |
612 |
Q |
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| T |
50909673 |
ccaaattgatttataaatcaatcttaattcttacacatcttgattttggagtttgaaggtgccatatatatagttcaaacttctattgtgacaaagtgca |
50909574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 50901143 - 50901041
Alignment:
| Q |
111 |
gaaaggaacctggaagaactggctcc-tgttccagcaacaattaagtattagccatcccaaagcagta---aagacgcgtctaatagattaatacttgtt |
206 |
Q |
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| T |
50901143 |
gaaagcaacctggaagaaccggctccctgttccaccaacaattaagtattagccatcccaaagcagtaaagaagacacatctaatagattaatacttggt |
50901044 |
T |
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| Q |
207 |
gga |
209 |
Q |
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||| |
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| T |
50901043 |
gga |
50901041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 269 - 351
Target Start/End: Complemental strand, 29368852 - 29368771
Alignment:
| Q |
269 |
attacttgatcctctttttgaattattaccatgcattattgctaaattgtattagagtagccatatttacaaatttactcaca |
351 |
Q |
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| T |
29368852 |
attacttcatcctctttttgaagtgttaccatgtattattgtgaaattgtattacagtagccattttta-aaatttactcaca |
29368771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 249 - 351
Target Start/End: Complemental strand, 43548637 - 43548535
Alignment:
| Q |
249 |
tagatagatgaagtcatcgtattacttgatcctctttttgaattattaccatgcattattgctaaattgtattagagtagccatatttacaaatttactc |
348 |
Q |
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| T |
43548637 |
tagatagatgaagtcgacttcttacttgatcctctttatgaattgtttccatgcattattgtcagattgtattagaggagtaatattttgaaatttactc |
43548538 |
T |
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| Q |
349 |
aca |
351 |
Q |
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| T |
43548537 |
aca |
43548535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 43548893 - 43548853
Alignment:
| Q |
61 |
gcacagacagcgaatatcttgtcatctttctcgccctgaac |
101 |
Q |
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| T |
43548893 |
gcacagacagcaattatcttgtcatctttctcgccctgaac |
43548853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 50901303 - 50901265
Alignment:
| Q |
61 |
gcacagacagcgaatatcttgtcatctttctcgccctga |
99 |
Q |
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| T |
50901303 |
gcacagacagcaattatcttgtcatctttctcgccctga |
50901265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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