View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1790_high_10 (Length: 285)
Name: NF1790_high_10
Description: NF1790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1790_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 225166 - 225419
Alignment:
| Q |
19 |
agaactaattcatttcaatgagaatcataggatcaattcagtttgatatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagatt |
118 |
Q |
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| T |
225166 |
agaactaattcatttcaatgagaatcataggatcaattcagtttgatatgtcaaaataaagctgagaagtggcattgtatatggccgcctttactagatt |
225265 |
T |
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| Q |
119 |
atgggaaaccatattaacctctctcataaaaaacgcgacataagagttgttacgagataaaccaaaaggacataaagatataagtgtaacaataaaagta |
218 |
Q |
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| T |
225266 |
atgggaaaccatattaacctctctcataaaaaacgcgacataagagttgttacgagataaaccaaaaggacataaagatataagtgtaacaataaaagta |
225365 |
T |
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| Q |
219 |
aagaaggtggggcatgccataccaatcatggttccgtgaagtattccaccatga |
272 |
Q |
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| T |
225366 |
aagaaggtggggcatgccataccaatcatggttccgtgaagtattccaccatga |
225419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 8746493 - 8746599
Alignment:
| Q |
65 |
tatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctctcataaaaaacgcgacataagag |
164 |
Q |
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| T |
8746493 |
tatgttaaaataaagaagagaactagcattatatacggccgtctttgcaagttcatgagcaaccatattagcctctctcctagaaaactcgacataagag |
8746592 |
T |
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| Q |
165 |
ttgttac |
171 |
Q |
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||||||| |
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| T |
8746593 |
ttgttac |
8746599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 233010 - 233069
Alignment:
| Q |
217 |
taaagaaggtggggcatgc----cataccaatcatggttccgtgaagtattccaccatga |
272 |
Q |
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| T |
233010 |
taaagaaggtggggcatcccacacacaccaatcatggttccgtgaagtattccactatga |
233069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 6954986 - 6955135
Alignment:
| Q |
22 |
actaattcatttcaatgagaatcataggatcaattcagtttgatatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatg |
121 |
Q |
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| T |
6954986 |
actaattcatttcattaaaaatcaaaggatcaatataatcaggtatgtcaaaataaagatgagaattggcattatatacagccacctttgcaagttcatg |
6955085 |
T |
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| Q |
122 |
ggaaaccatattaacctctctcataaaaaacgcgacataagagttgttac |
171 |
Q |
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| T |
6955086 |
agcaaccatattagtctctctcttagaaaactcgacataagagttgttac |
6955135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 171
Target Start/End: Complemental strand, 28695254 - 28695148
Alignment:
| Q |
65 |
tatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctctcataaaaaacgcgacataagag |
164 |
Q |
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|||||||| |||||| |||||| || |||| ||||||| ||||||||| || | ||| | |||||||||| || |||| || ||||| ||| ||||||| |
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| T |
28695254 |
tatgtcaatataaagatgagaactgacattatatatggtcgcctttgcaagttcatgagcaaccatattagactgtctcctagaaaactcgaaataagag |
28695155 |
T |
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| Q |
165 |
ttgttac |
171 |
Q |
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||||||| |
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| T |
28695154 |
ttgttac |
28695148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 173
Target Start/End: Original strand, 41289773 - 41289882
Alignment:
| Q |
64 |
atatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctctcataaaaaacgcgacataaga |
163 |
Q |
| |
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|||| |||||||| || |||||| || |||| ||||||| ||| ||||| |||||||| | || ||||||| | ||||| || |||| |||||||||| |
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| T |
41289773 |
atatatcaaaatagagatgagaattgtcattatatatggtcgcttttgcaagattatgagcaatcatattagcatctcttttagaaaaatcgacataaga |
41289872 |
T |
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| Q |
164 |
gttgttacga |
173 |
Q |
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|||||||||| |
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| T |
41289873 |
gttgttacga |
41289882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 170
Target Start/End: Complemental strand, 32011625 - 32011520
Alignment:
| Q |
65 |
tatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctctcataaaaaacgcgacataagag |
164 |
Q |
| |
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|||||||||||| | |||||| | |||| | |||||||| ||||| |||||||| |||||||||| |||||||||| ||||| ||||||||||| |
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| T |
32011625 |
tatgtcaaaatatatatgagaatagacattatctatggccgtctttggaagattatgaacaaccatattattctctctcatagaaaactcgacataagag |
32011526 |
T |
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| Q |
165 |
ttgtta |
170 |
Q |
| |
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|||||| |
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| T |
32011525 |
ttgtta |
32011520 |
T |
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