View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1790_high_13 (Length: 253)
Name: NF1790_high_13
Description: NF1790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1790_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 38634544 - 38634330
Alignment:
| Q |
25 |
tttagcaggagcagtggtgctagaaaaattgacgcccaacggagacacaaaccacacagactgtgcccattcacattccatgaataaatgttcaatggtt |
124 |
Q |
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| T |
38634544 |
tttagcaggagcagtggtgctagaaaaattgacgcccaacggagacacaaaccacacagactgtgcccatttacattccatgaataaatgttcaatggtt |
38634445 |
T |
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| Q |
125 |
tcaatatgactatcacgaaaacaacattgtggagtgcaattgattcctttattaaaaagagccattttaactccaagacgagcatgaagtaaacgccaaa |
224 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38634444 |
tcaatatgactatcacgaaaactacattgtggattgcaattgattcctttattaaaaagagccattttaactccaagacgagcatgaagtaaacgccaaa |
38634345 |
T |
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| Q |
225 |
tcagatgggcatgtt |
239 |
Q |
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||||||||||||||| |
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| T |
38634344 |
tcagatgggcatgtt |
38634330 |
T |
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