View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1790_high_16 (Length: 245)
Name: NF1790_high_16
Description: NF1790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1790_high_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 14705037 - 14705255
Alignment:
| Q |
13 |
aatatatatgtggataattgtctgtttgtgattctaatgtattatgcttgaatttatgtagatttaatcaaatagatttagaccttatatgctaataata |
112 |
Q |
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| T |
14705037 |
aatatatatgtggataattgtctgtttgtgattctaatgtattatgcttgaatttatgtagatttaatcaaatagaatta--------------ataatc |
14705122 |
T |
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| Q |
113 |
tgttacattttacttcatcttgtggatcctaaataagagtgacctagcagtgctacgtcaacactttctattttatagtgtcataagttggacgtcgaat |
212 |
Q |
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| T |
14705123 |
tattacattttacttcatcttgtggatcccaaataagagtgacctaccagtgctacgtcaatactttctgttttatagtgtcataagttggacgtcgaat |
14705222 |
T |
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| Q |
213 |
ttaacagaagaatcaaaataatgtaatcaaaca |
245 |
Q |
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| T |
14705223 |
ttaacagaagaatcaaaataatgtaatcaaaca |
14705255 |
T |
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