View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1790_high_2 (Length: 494)
Name: NF1790_high_2
Description: NF1790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1790_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 5 - 484
Target Start/End: Original strand, 30661142 - 30661612
Alignment:
| Q |
5 |
caaatataagatttcttgttagcagtgcagtaagacttttactttcttcttttannnnnnnnactaaaagtaaaaattttatttacttctgagtcattca |
104 |
Q |
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| T |
30661142 |
caaatataagatttcttgttagcagtgcagtaagacttttactttcttcttttattttttttactaaaagtaaaaattt-atttacttctgactcattca |
30661240 |
T |
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| Q |
105 |
tcaatgaaaaatatggacaggctttctacataccatatttaagacaaatatggacatggttaggtttttcatctgtgacaaagaaaaatttaatttcttt |
204 |
Q |
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| T |
30661241 |
tcaatgaaaaatatggacaggctttctacataccatatttaagacaaatatggacatggttaggtttttcatatgtaacgaagaaaaatttaatatcctt |
30661340 |
T |
|
| Q |
205 |
gttggtagctggtgatagttgcattatagtacctggtggaatgagagaaacactttttatggaacatggttgtgaggtacattacttatcaaatgcaaaa |
304 |
Q |
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| T |
30661341 |
gttggtagctggtgaaagttgcattatagtacctggtggaatgagagaaacactttttatggaacatggttgtgaggtacattacttatcaaatgcaaaa |
30661440 |
T |
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| Q |
305 |
gtaataataattcacagttcacaccattgattttgctcctaataagaaatatatgcaatgtgtatagaatgtatatcttaaagaaagaaaaggatttgtt |
404 |
Q |
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| T |
30661441 |
gtaataatcttaaaga------------aagtttgctcctaataagaaatatatgcaatgtgtatagaatgtatatcttaaagaaagaaaaggatttgtt |
30661528 |
T |
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| Q |
405 |
cgaatagcaatggagatgggtcacccccttgttccggttttctgctttggtcagg----tatatatgtttattctcctcctatg |
484 |
Q |
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| T |
30661529 |
cgaatagcaatggagatgggtcacccccttgttccggttttctgctttggtcaggtatatatatatgtttattctcctcctatg |
30661612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 325 - 466
Target Start/End: Complemental strand, 13198641 - 13198501
Alignment:
| Q |
325 |
acaccattgattttgctcctaataagaaatatatgcaatgtgtatagaatgtatatcttaaagaaagaaaaggatttgttcgaatagcaatggagatggg |
424 |
Q |
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|||||||||||||| ||||||||||||| | || ||||| |||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
13198641 |
acaccattgatttt-ctcctaataagaagttgatataatgtatatagaatgtatttctcaaagaaagaagaggatttgttcgaatagcaatggagatggg |
13198543 |
T |
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| Q |
425 |
tcacccccttgttccggttttctgctttggtcaggtatatat |
466 |
Q |
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| T |
13198542 |
tcacccccttgttccagttttctgctttggtcaggtatatat |
13198501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 127 - 286
Target Start/End: Complemental strand, 13199404 - 13199245
Alignment:
| Q |
127 |
tttctacataccatatttaagacaaatatggacatggttaggtttttcatctgtgacaaagaaaaatttaatttctttgttggtagctggtgatagttgc |
226 |
Q |
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| T |
13199404 |
tttctacataccatttttgagacaagtatggatatggttgggttttacatcagtggataagaagaatttaatttccttgttggaagctggcaatagttgc |
13199305 |
T |
|
| Q |
227 |
attatagtacctggtggaatgagagaaacactttttatggaacatggttgtgaggtacat |
286 |
Q |
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| T |
13199304 |
atgttagtacctggtggaaaccgtgaaaccctttttatggagcatgggttcgaggtacat |
13199245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 461
Target Start/End: Complemental strand, 10112144 - 10112072
Alignment:
| Q |
389 |
aagaaaaggatttgttcgaatagcaatggagatgggtcacccccttgttccggttttctgctttggtcaggta |
461 |
Q |
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||||| ||| ||||| || |||||| |||||| |||||| ||| | ||||| ||||||||||||||||||||| |
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| T |
10112144 |
aagaagaggttttgtccgcatagcattggagaagggtcatcccttggttcctgttttctgctttggtcaggta |
10112072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 244
Target Start/End: Complemental strand, 10112763 - 10112647
Alignment:
| Q |
128 |
ttctacataccatatttaagacaaatatggacatggttaggtttttcatctgtgacaaagaaaaatttaatttctttgttggtagctggtgatagttgca |
227 |
Q |
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||||||| ||||| ||||||||| |||||||||||||| ||| || || | | |||| ||||||||| || || |||| | |||||| ||||||||| |
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| T |
10112763 |
ttctacacaccatttttaagacacatatggacatggttgggtcttacaccagcaacaaggaaaaattttatctccctgttagctgctggttatagttgca |
10112664 |
T |
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| Q |
228 |
ttatagtacctggtgga |
244 |
Q |
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|| || ||||||||||| |
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| T |
10112663 |
ttttaatacctggtgga |
10112647 |
T |
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