View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1790_high_20 (Length: 231)
Name: NF1790_high_20
Description: NF1790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1790_high_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 1106735 - 1106630
Alignment:
| Q |
15 |
cacagagtagggattctgaagaaaaccaaccaaattcacgtgtaaataaactcgttatctataatcacaatgcaacatggttaatgaattgcagcaaaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1106735 |
cacagagtagggattctgaagaaaaccaaccaaattcacgtgtaaataaactcgttatctataatcacaatgcaacatggttaatgaattgcagcaaaac |
1106636 |
T |
|
| Q |
115 |
aacata |
120 |
Q |
| |
|
|||||| |
|
|
| T |
1106635 |
aacata |
1106630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 1106632 - 1106570
Alignment:
| Q |
153 |
atattttaattcttttccacaattctacggatcaatatccggataggtaagtcatagtgtgtt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1106632 |
atattttaattcttttccacaattctacggatcaatatccggataggtaagtcatagtgtgtt |
1106570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 3735856 - 3735768
Alignment:
| Q |
64 |
actcgttatctataatcacaatgcaacatggttaatgaattgcagcaaaacaacataaatctaagcatatcaatagctggatttataaaa |
153 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||| || ||||||||| || |||||||||||| ||||| |||||||||| |
|
|
| T |
3735856 |
actcgttatcaataatcacaatgcaacatggctaatgaattctag-gaaacaacatgaacctaagcatatcagtagctcaatttataaaa |
3735768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 22981792 - 22981849
Alignment:
| Q |
15 |
cacagagtagggattctgaagaaaaccaaccaaattcacgtgtaaataaactcgttat |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22981792 |
cacagagtagggattctgaagaaaaccaaccaaattcacgtgtaaataaactcgttat |
22981849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University