View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1790_high_4 (Length: 424)
Name: NF1790_high_4
Description: NF1790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1790_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 71 - 340
Target Start/End: Complemental strand, 43924516 - 43924247
Alignment:
| Q |
71 |
accaaaatttgttcacactactcgtacccattcacattctcgttcattcccagaacccgatgactaccaagttcaagaccttcgtgttccccctcattgg |
170 |
Q |
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| T |
43924516 |
accaaaatttgttcacactactcgtacccattcacattctcgttcattcccagaacccgatgactaccaagttcaagaccttcgtgttccccctcattgg |
43924417 |
T |
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| Q |
171 |
ttactcccaaccaatgcttcccaggtattcattcctctctaatttttataaacttctagttcagatgttcatgttagaagaattagttcaatattgttgc |
270 |
Q |
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| T |
43924416 |
ttactcccaaccaatgcttcccaggtattcattcctctctaatttttataaacttctagttcagatgttcatgttagaagaattagttcaatattgttcc |
43924317 |
T |
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| Q |
271 |
acgtgatttatgattagttcaaagttagttagcttagactgacgaacggaacaaaggacacgccaacacc |
340 |
Q |
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| T |
43924316 |
acgttagttatgattagttcaaagttagttagcttagactgatgaacggaacaaaggacacgcctacacc |
43924247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 43924231 - 43924176
Alignment:
| Q |
362 |
ttgagaaaatagcattgctgaatatcatcccatgtgttagtgtcctttctgtgttg |
417 |
Q |
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| T |
43924231 |
ttgagaaaatagcattgctgattatgatcacatgtgttagtgtcctttctttgttg |
43924176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7329321 - 7329275
Alignment:
| Q |
1 |
actgttccttcacttgctttgaggccacaacacaatctatgtaatct |
47 |
Q |
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| T |
7329321 |
actgttccttcaattgctttgagtccacaacacaatctatgtaatct |
7329275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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