View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1790_low_13 (Length: 266)
Name: NF1790_low_13
Description: NF1790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1790_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 1429410 - 1429175
Alignment:
| Q |
20 |
gtacattcactctctcttgtgtttggattcaaaaagaaaatttaaaaactgaagagagaagaatttagatacttttgtgtaaaattgaaatcacacnnnn |
119 |
Q |
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| T |
1429410 |
gtacattcactctctc--gtgtttggattcaaaaagaaaatttaaaaactgaagagagaagaatttagatatttttgtgtaaaattgaaatcacacattt |
1429313 |
T |
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| Q |
120 |
nnnnnnnaaagaaaaaatcatacacttgttattctaagttcatctttattccatttatatgagctccatttaacatacaaatacaatgatcactactttg |
219 |
Q |
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| T |
1429312 |
ttttta-aaagaaaaaatcatacacttgttattctgagttcatctttattccatttagatgagctccatttaacatataaatacaatgatcactactttg |
1429214 |
T |
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| Q |
220 |
ttcccttttacggtgcaccaataataaattccctttgctt |
259 |
Q |
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| T |
1429213 |
tt-ccttttacggtgcaccaatattaagttccctttgctt |
1429175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 1567937 - 1568015
Alignment:
| Q |
32 |
tctcttgtgtttggattcaaaaagaaaatttaaaaactgaagagagaagaatttagatacttttgtgtaaaattgaaat |
110 |
Q |
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|||||| |||||||||| ||||| |||||| ||||| | |||||||||||||||| ||||||||||||||| ||||| |
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| T |
1567937 |
tctcttttgtttggattgaaaaaaaaaattgaaaaatgtaggagagaagaatttagagacttttgtgtaaaatggaaat |
1568015 |
T |
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