View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1790_low_18 (Length: 241)

Name: NF1790_low_18
Description: NF1790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1790_low_18
NF1790_low_18
[»] chr8 (7 HSPs)
chr8 (17-229)||(8865880-8866091)
chr8 (33-133)||(11920771-11920871)
chr8 (157-232)||(776455-776530)
chr8 (157-232)||(782109-782184)
chr8 (19-126)||(8566646-8566753)
chr8 (43-120)||(776298-776375)
chr8 (43-120)||(781952-782029)
[»] chr2 (5 HSPs)
chr2 (26-133)||(36995587-36995694)
chr2 (157-228)||(36995766-36995837)
chr2 (29-133)||(33004547-33004651)
chr2 (46-133)||(36776869-36776956)
chr2 (32-85)||(38824739-38824792)
[»] chr4 (3 HSPs)
chr4 (26-133)||(28627116-28627223)
chr4 (157-232)||(28627293-28627368)
chr4 (32-85)||(3463793-3463846)
[»] chr3 (4 HSPs)
chr3 (26-123)||(47924487-47924584)
chr3 (157-226)||(47924415-47924484)
chr3 (32-95)||(23624691-23624754)
chr3 (32-67)||(20362179-20362214)
[»] chr1 (4 HSPs)
chr1 (31-90)||(4809350-4809409)
chr1 (157-228)||(36619412-36619483)
chr1 (157-228)||(36619262-36619333)
chr1 (32-80)||(34501409-34501457)
[»] chr5 (3 HSPs)
chr5 (42-120)||(7361989-7362067)
chr5 (32-126)||(8508319-8508412)
chr5 (157-229)||(7361857-7361929)
[»] chr6 (2 HSPs)
chr6 (193-232)||(6086951-6086990)
chr6 (35-95)||(27739003-27739062)


Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 8865880 - 8866091
Alignment:
Q  17 ttcaaagcatgggcaaaatatttttagaatatatattaaacagttttaaaataatagcaaaattttgaattggtgcagttgtatgctttgttgaaactaa 116  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  8865880 ttcaaagcctgggcaaaatattttcagaatatatattaaacagttt-aaaataatagcaaaattgtgaattggtgcagttgtatgttttgttgaaactaa 8865978  T
Q  117 catggagaaccgcggtttaccacggatccaaaaggagggtttaccacggatcgaacccacgccgtagcgggattaggtagtgcgcctaaccactgcaaca 216  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||| | ||||| || | |||||| |||||||||||||||||||    
T  8865979 catggagaaccgctatttaccacggatccaaaaggagggtttaccacggatcaaacccacactgtagcagggtcaggtagcgcgcctaaccactgcaaca 8866078  T
Q  217 caatgtaacatat 229  Q
    |||||||||||||    
T  8866079 caatgtaacatat 8866091  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 11920771 - 11920871
Alignment:
Q  33 aatatttttagaatatatattaaacagttttaaaataatagcaaaattttgaattggtgcagttgtatgctttgttgaaactaacatggagaaccgcggt 132  Q
    |||||||||||||||||||||||||||||||| || |||| ||||||| |||||||||| ||| || ||||||||||||||||||||||| ||| |||||    
T  11920771 aatatttttagaatatatattaaacagttttacaagaataacaaaattgtgaattggtgtagtggtttgctttgttgaaactaacatggaaaacagcggt 11920870  T
Q  133 t 133  Q
    |    
T  11920871 t 11920871  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 776455 - 776530
Alignment:
Q  157 ttaccacggatcgaacccacgccgtagcgggattaggtagtgcgcctaaccactgcaacacaatgtaacatatgat 232  Q
    |||||| |||||| ||||||||| ||| || |||||| || ||||||| |||||||||||| ||||||||||||||    
T  776455 ttaccatggatcggacccacgccctaggggcattagggagcgcgcctatccactgcaacaccatgtaacatatgat 776530  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 782109 - 782184
Alignment:
Q  157 ttaccacggatcgaacccacgccgtagcgggattaggtagtgcgcctaaccactgcaacacaatgtaacatatgat 232  Q
    |||||| |||||| ||||||||| ||| || |||||| || ||||||| |||||||||||| ||||||||||||||    
T  782109 ttaccatggatcggacccacgccctaggggcattagggagcgcgcctatccactgcaacaccatgtaacatatgat 782184  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 8566646 - 8566753
Alignment:
Q  19 caaagcatgggcaaaatatttttagaatatatattaaacagttttaaaataatagcaaaattttgaattggtgcagttgtatgctttgttgaaactaaca 118  Q
    |||||| ||||||||| | ||| ||||||| ||||||||||||||| |||| ||   ||||| |||||||||| ||| || || |||||||||||||||     
T  8566646 caaagcctgggcaaaaaagtttcagaatatttattaaacagttttataatattattgaaattgtgaattggtgtagtggtttgttttgttgaaactaact 8566745  T
Q  119 tggagaac 126  Q
    || |||||    
T  8566746 tgaagaac 8566753  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 776298 - 776375
Alignment:
Q  43 gaatatatattaaacagttttaaaataatagcaaaattttgaattggtgcagttgtatgctttgttgaaactaacatg 120  Q
    |||||||||||||||| ||||| |||| |||  ||||| || ||||||||||| || || ||||||||||||||||||    
T  776298 gaatatatattaaacaattttataatattagagaaattgtgtattggtgcagtggtttgttttgttgaaactaacatg 776375  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 781952 - 782029
Alignment:
Q  43 gaatatatattaaacagttttaaaataatagcaaaattttgaattggtgcagttgtatgctttgttgaaactaacatg 120  Q
    |||||||||||||||| ||||| |||| |||  ||||| || ||||||||||| || || ||||||||||||||||||    
T  781952 gaatatatattaaacaattttataatattagagaaattgtgtattggtgcagtggtttgttttgttgaaactaacatg 782029  T

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Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 36995587 - 36995694
Alignment:
Q  26 tgggcaaaatatttttagaatatatattaaacagttttaaaataatagcaaaattttgaattggtgcagttgtatgctttgttgaaactaacatggagaa 125  Q
    ||||||||||||||| | |||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||    
T  36995587 tgggcaaaatattttcataatatatattaaacagttttaaaacaatagcaaaattgtgaattggtgcagtggtatgttttgttgaaactaacatggagaa 36995686  T
Q  126 ccgcggtt 133  Q
    ||||||||    
T  36995687 ccgcggtt 36995694  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 36995766 - 36995837
Alignment:
Q  157 ttaccacggatcgaacccacgccgtagcgggattaggtagtgcgcctaaccactgcaacacaatgtaacata 228  Q
    ||||||||||||||||||||||| ||||||||| |||||| |||| ||||||||||||||||||||||||||    
T  36995766 ttaccacggatcgaacccacgccatagcgggatcaggtagcgcgcttaaccactgcaacacaatgtaacata 36995837  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 33004547 - 33004651
Alignment:
Q  29 gcaaaatatttttagaatatatattaaacagttttaaaataatagcaaaattttgaattggtgcagttgtatgctttgttgaaactaacatggagaaccg 128  Q
    |||||||||||| |||||| |||||||| |||||||| |||||    ||||| |||||||||||||| || || |||||||||||||||||||||||| |    
T  33004547 gcaaaatattttcagaataaatattaaatagttttaagataattttgaaattatgaattggtgcagtggtttgttttgttgaaactaacatggagaacag 33004646  T
Q  129 cggtt 133  Q
    |||||    
T  33004647 cggtt 33004651  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 36776956 - 36776869
Alignment:
Q  46 tatatattaaacagttttaaaataatagcaaaattttgaattggtgcagttgtatgctttgttgaaactaacatggagaaccgcggtt 133  Q
    |||||||||||||||||||||||| |||||||| | ||||||||||| || |  || |||||||||||||||||||||||||| ||||    
T  36776956 tatatattaaacagttttaaaatattagcaaaactgtgaattggtgcggtgggttgttttgttgaaactaacatggagaaccgtggtt 36776869  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 38824739 - 38824792
Alignment:
Q  32 aaatatttttagaatatatattaaacagttttaaaataatagcaaaattttgaa 85  Q
    |||||||| |||||||||||||||| |||||||| | | |||||||||| ||||    
T  38824739 aaatatttatagaatatatattaaatagttttaagaaattagcaaaattatgaa 38824792  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 28627116 - 28627223
Alignment:
Q  26 tgggcaaaatatttttagaatatatattaaacagttttaaaataatagcaaaattttgaattggtgcagttgtatgctttgttgaaactaacatggagaa 125  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||| |||||| ||||||||||||||||    
T  28627116 tgggcaaaatatttccagaatatatattaaacagttttaaaataatagcaaaattgtgaattggtgtagtggtatgttttgttaaaactaacatggagaa 28627215  T
Q  126 ccgcggtt 133  Q
    ||||||||    
T  28627216 ccgcggtt 28627223  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 28627293 - 28627368
Alignment:
Q  157 ttaccacggatcgaacccacgccgtagcgggattaggtagtgcgcctaaccactgcaacacaatgtaacatatgat 232  Q
    |||||| |||||||||||||||||||||||| |  |||||  ||||||||||||||||||||||||||||||||||    
T  28627293 ttaccatggatcgaacccacgccgtagcggggtctggtagcacgcctaaccactgcaacacaatgtaacatatgat 28627368  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 3463846 - 3463793
Alignment:
Q  32 aaatatttttagaatatatattaaacagttttaaaataatagcaaaattttgaa 85  Q
    |||||||| | ||||||||||||||||||||||| ||| || ||||||| ||||    
T  3463846 aaatatttgtggaatatatattaaacagttttaagatattatcaaaattatgaa 3463793  T

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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 47924584 - 47924487
Alignment:
Q  26 tgggcaaaatatttttagaatatatattaaacagttttaaaataatagcaaaattttgaattggtgcagttgtatgctttgttgaaactaacatggag 123  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||    
T  47924584 tgggcaaaatattttcagaatatatattaaacaattttaaaataatagcaaaattgtgaattggtgcagtggtatgttttgttgaaactaacatggag 47924487  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 47924484 - 47924415
Alignment:
Q  157 ttaccacggatcgaacccacgccgtagcgggattaggtagtgcgcctaaccactgcaacacaatgtaaca 226  Q
    ||||||| ||||||||||||||| ||||||| | |||||| |||||||||||||||||||||||||||||    
T  47924484 ttaccacagatcgaacccacgccttagcggggtcaggtagcgcgcctaaccactgcaacacaatgtaaca 47924415  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 23624691 - 23624754
Alignment:
Q  32 aaatatttttagaatatatattaaacagttttaaaataatagcaaaattttgaattggtgcagt 95  Q
    |||||||||||||||||||||||||||||| ||| |||  |||||||||  ||| |||||||||    
T  23624691 aaatatttttagaatatatattaaacagttgtaagatacaagcaaaattgcgaactggtgcagt 23624754  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 20362214 - 20362179
Alignment:
Q  32 aaatatttttagaatatatattaaacagttttaaaa 67  Q
    |||||||| |||||||||||||||||||||||||||    
T  20362214 aaatatttctagaatatatattaaacagttttaaaa 20362179  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 4809350 - 4809409
Alignment:
Q  31 aaaatatttttagaatatatattaaacagttttaaaataatagcaaaattttgaattggt 90  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||    
T  4809350 aaaatattttcataatatatattaaacagttttaaaataatagcaaaattgtgaattggt 4809409  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 36619412 - 36619483
Alignment:
Q  157 ttaccacggatcgaacccacgccgtagcgggattaggtagtgcgcctaaccactgcaacacaatgtaacata 228  Q
    ||||||||||||||||||| ||| ||||||||| |||||| |||| |||||||| |||||||||||||||||    
T  36619412 ttaccacggatcgaacccaagccatagcgggatcaggtagcgcgcttaaccactacaacacaatgtaacata 36619483  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 36619262 - 36619333
Alignment:
Q  157 ttaccacggatcgaacccacgccgtagcgggattaggtagtgcgcctaaccactgcaacacaatgtaacata 228  Q
    ||||||||||||||||||| ||| ||| ||||| |||||| |||| |||||||| |||||||||||||||||    
T  36619262 ttaccacggatcgaacccaagccatagagggatcaggtagcgcgcttaaccactacaacacaatgtaacata 36619333  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 34501457 - 34501409
Alignment:
Q  32 aaatatttttagaatatatattaaacagttttaaaataatagcaaaatt 80  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||    
T  34501457 aaatattttcagaatatatattaaacagttttaagatactaacaaaatt 34501409  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 7362067 - 7361989
Alignment:
Q  42 agaatatatattaaacagttttaaaataatagcaaaattttgaattggtgcagttgtatgctttgttgaaactaacatg 120  Q
    ||||||||||||||||| || || |||| ||| ||| || |||||||||||||| || || ||||||||||||||||||    
T  7362067 agaatatatattaaacaattctataatattagaaaatttgtgaattggtgcagtggtttgttttgttgaaactaacatg 7361989  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 8508412 - 8508319
Alignment:
Q  32 aaatatttttagaatatatattaaacagttttaaaataatagcaaaattttgaattggtgcagttgtatgctttgttgaaactaacatggagaac 126  Q
    ||||||||| ||||||| |||||||||||||||||| | |||||||||| || ||||||||||| || |  ||| ||||| ||||||| ||||||    
T  8508412 aaatattttcagaatatgtattaaacagttttaaaa-actagcaaaattatggattggtgcagtggtttattttcttgaatctaacatagagaac 8508319  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 7361929 - 7361857
Alignment:
Q  157 ttaccacggatcgaacccacgccgtagcgggattaggtagtgcgcctaaccactgcaacacaatgtaacatat 229  Q
    |||||| |||||||||||||||| |||  || ||||| ||  |||||| ||||| |||||| |||||||||||    
T  7361929 ttaccatggatcgaacccacgccctagtagggttagggagcacgcctatccactacaacaccatgtaacatat 7361857  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 6086990 - 6086951
Alignment:
Q  193 gtagtgcgcctaaccactgcaacacaatgtaacatatgat 232  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  6086990 gtagcgcgcctaaccactgcaacacaatgtaacatatgat 6086951  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 27739003 - 27739062
Alignment:
Q  35 tatttttagaatatatattaaacagttttaaaataatagcaaaattttgaattggtgcagt 95  Q
    |||||| |||||||||||||| ||||||||| ||| ||||||| || || |||||||||||    
T  27739003 tattttcagaatatatattaa-cagttttaagatactagcaaacttgtggattggtgcagt 27739062  T

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