View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1790_low_20 (Length: 238)
Name: NF1790_low_20
Description: NF1790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1790_low_20 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 4137248 - 4137468
Alignment:
| Q |
18 |
attgcttcccattcttatcaagccagaacttccttggaattgtctacattgtaaataaacactaatcattcatcaaatcttataactattatctagatca |
117 |
Q |
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| T |
4137248 |
attgcttcccattcttatcaagccagaacttccttggaattgtctacattgtaaataaacactaatcattcatcaaatcttataactattatctagatca |
4137347 |
T |
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| Q |
118 |
ggttataatatataattgtataacggatagcgcaaggttttaaattgtagttgcagtcacatgccgattcttaatattgcaaatagctgtaatcaaatgc |
217 |
Q |
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| T |
4137348 |
ggttataatatataattatataacggatagcgcaaggttttaaattgtagttgcagtcacatgccgattcttaatattgcaaatagctgtaatcaaatgc |
4137447 |
T |
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| Q |
218 |
gattgatgaaacatcatctgc |
238 |
Q |
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| T |
4137448 |
gattgatgaaacatcaactgc |
4137468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 4128651 - 4128853
Alignment:
| Q |
34 |
atcaagccagaacttccttggaattgtctacattgtaaataaacactaatcattcatcaaatcttataactattatctagatcaggttataatatataat |
133 |
Q |
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| T |
4128651 |
atcaagccaaaacttccttggaatagtctacattgtagagaaataataaccattcatcaaatcttgtaactattaactagagcattctataatat--aat |
4128748 |
T |
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| Q |
134 |
tgtataacggatagcgcaaggttttaaattgtagttgcagtcacatgccgattcttaatattgcaaatagctgtaatcaaatgcgattgatgaaacatca |
233 |
Q |
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| T |
4128749 |
tgtatgacggatagtgcaaggttttaaattacagttgcagcaacatgccaattcttaatattgcaaatagttgaagtcaaatgcggttgacgcaacatca |
4128848 |
T |
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| Q |
234 |
tctgc |
238 |
Q |
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|||| |
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| T |
4128849 |
actgc |
4128853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 4142323 - 4142431
Alignment:
| Q |
21 |
gcttcccattcttatcaagccagaacttccttggaattgtctacattgtaaataaacactaatcattcatcaaatcttataactattatctagatcaggt |
120 |
Q |
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|||||||| | | ||||||||| ||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |||||||||||||||||| || |
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| T |
4142323 |
gcttcccactttcatcaagccaaaacttccttggaattgtctacattgtagagaaactctaatcattcatcaaatcttgtaactattatctagatcatgt |
4142422 |
T |
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| Q |
121 |
tataatata |
129 |
Q |
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| T |
4142423 |
tataatata |
4142431 |
T |
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