View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1790_low_3 (Length: 434)

Name: NF1790_low_3
Description: NF1790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1790_low_3
NF1790_low_3
[»] chr8 (6 HSPs)
chr8 (18-368)||(5879332-5879689)
chr8 (366-429)||(5879118-5879181)
chr8 (337-394)||(2598298-2598356)
chr8 (371-400)||(3117178-3117207)
chr8 (369-405)||(8740907-8740943)
chr8 (337-420)||(27870759-27870843)
[»] chr5 (4 HSPs)
chr5 (370-422)||(5731705-5731757)
chr5 (372-422)||(39213276-39213326)
chr5 (369-417)||(33537495-33537543)
chr5 (352-405)||(28225146-28225199)
[»] chr4 (3 HSPs)
chr4 (327-420)||(17121129-17121223)
chr4 (344-422)||(11025033-11025112)
chr4 (368-420)||(23915571-23915623)
[»] chr7 (2 HSPs)
chr7 (369-420)||(7929989-7930040)
chr7 (372-422)||(29121442-29121492)
[»] chr3 (1 HSPs)
chr3 (369-420)||(54225971-54226022)
[»] chr2 (4 HSPs)
chr2 (357-420)||(23492789-23492850)
chr2 (368-422)||(38449250-38449304)
chr2 (369-418)||(15873573-15873622)
chr2 (326-394)||(42363890-42363958)
[»] chr1 (1 HSPs)
chr1 (368-401)||(44122156-44122189)


Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 5879689 - 5879332
Alignment:
Q  18 agaatttgattagaagggttatgagattggaactgggttactcggattgtgtc-----ccccaaagactctagaggtggaaaaacacat--tttgtaggt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||  |||||||||    
T  5879689 agaatttgattagaagggttatgagattggaactgggttactcggattgtgtgtggtgccccaaagactctagaggtggaaaaacacatattttgtaggt 5879590  T
Q  111 agctagctttgtctgtaaggtttggtattcgatttttacgttgattgaaacgggtgtaattttacctagaaattgtagtca---ttctagaccatttatc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||   ||||||||||||||||    
T  5879589 agctagctttgtctgtaaggtttggtattcgatttttacgttgat-gaaacaggtgtaattttacctagaaattgtagtcactcttctagaccatttatc 5879491  T
Q  208 atcgtcttcttggtgtaaaaaacatcaaaaagacctaactcttatttagcatacaataattccaaagatttgagagactcgaaatggggtgatctaacta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  5879490 atcgtcttcttggtgtaaaaaacatcaaaaagacctaactcttatttagcatacaataatg--aaagatttgagagactcgaaatggggtgatctaacta 5879393  T
Q  308 agcaaaaaggggtgccttatactcactttgtcttagaataggtgtcattttttctaattct 368  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5879392 agcaaaaaggggtgccttatactccctttgtcttagaataggtgtcattttttctaattct 5879332  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 429
Target Start/End: Complemental strand, 5879181 - 5879118
Alignment:
Q  366 tcttttgtctcaaattatttgtcccttttacaataccaatgtaatatttattattttcttcgac 429  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| ||||||    
T  5879181 tcttttgtctcaaattatttgtcccttttataataccaatataatatttattacttttttcgac 5879118  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 394
Target Start/End: Original strand, 2598298 - 2598356
Alignment:
Q  337 gtcttagaataggtgtcattttttctaattctt-ttgtctcaaattatttgtccctttt 394  Q
    |||||| ||||||||| || |||||||||| || |||||||||||||||||||| ||||    
T  2598298 gtcttacaataggtgttatcttttctaatttttgttgtctcaaattatttgtccttttt 2598356  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 400
Target Start/End: Complemental strand, 3117207 - 3117178
Alignment:
Q  371 tgtctcaaattatttgtcccttttacaata 400  Q
    ||||||||||||||||||||||||||||||    
T  3117207 tgtctcaaattatttgtcccttttacaata 3117178  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 8740907 - 8740943
Alignment:
Q  369 tttgtctcaaattatttgtcccttttacaataccaat 405  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  8740907 tttgtctaaaattatttgtcccttttacaatatcaat 8740943  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 420
Target Start/End: Original strand, 27870759 - 27870843
Alignment:
Q  337 gtcttagaataggtgtcattttttctaattct-tttgtctcaaattatttgtcccttttacaataccaatgtaatatttattatt 420  Q
    |||||| | |||||||| | |||||||||| | |||||||||||| ||||||| |||||| |||| ||||  ||||||| |||||    
T  27870759 gtcttaaattaggtgtcctcttttctaattttctttgtctcaaatgatttgtctcttttataatatcaatacaatattttttatt 27870843  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 370 - 422
Target Start/End: Original strand, 5731705 - 5731757
Alignment:
Q  370 ttgtctcaaattatttgtcccttttacaataccaatgtaatatttattatttt 422  Q
    ||||||||||||||||||||||||||||||| ||||  |||||||||||||||    
T  5731705 ttgtctcaaattatttgtcccttttacaatatcaatacaatatttattatttt 5731757  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 422
Target Start/End: Original strand, 39213276 - 39213326
Alignment:
Q  372 gtctcaaattatttgtcccttttacaataccaatgtaatatttattatttt 422  Q
    |||||||||||||||||||||||| |||||||||  || ||||||||||||    
T  39213276 gtctcaaattatttgtcccttttataataccaatacaacatttattatttt 39213326  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 417
Target Start/End: Original strand, 33537495 - 33537543
Alignment:
Q  369 tttgtctcaaattatttgtcccttttacaataccaatgtaatatttatt 417  Q
    |||||||||||||||||||| |||||| ||||||||| ||| |||||||    
T  33537495 tttgtctcaaattatttgtctcttttataataccaatataacatttatt 33537543  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 405
Target Start/End: Complemental strand, 28225199 - 28225146
Alignment:
Q  352 tcattttttctaattcttttgtctcaaattatttgtcccttttacaataccaat 405  Q
    |||| |||| |||||  |||||||||||||||||||| ||||||||||| ||||    
T  28225199 tcatcttttataatttatttgtctcaaattatttgtctcttttacaataacaat 28225146  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 420
Target Start/End: Original strand, 17121129 - 17121223
Alignment:
Q  327 tactcactttgtcttagaataggtgtcattttttctaattct-tttgtctcaaattatttgtcccttttacaataccaatgtaatatttattatt 420  Q
    ||||| |||||||| | ||| |||||| ||||| ||| || | |||||| || |||||||||||||||||||||||||||| || ||||||||||    
T  17121129 tactccctttgtctcaaaattggtgtcttttttactatttttctttgtcacatattatttgtcccttttacaataccaatgcaacatttattatt 17121223  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 422
Target Start/End: Complemental strand, 11025112 - 11025033
Alignment:
Q  344 aataggtgtcattttttctaattct-tttgtctcaaattatttgtcccttttacaataccaatgtaatatttattatttt 422  Q
    |||| ||||||| |||| ||||| | ||||||||||||||||||| |||| ||||||| |||| ||| ||||||||||||    
T  11025112 aatatgtgtcatcttttataattttctttgtctcaaattatttgttccttctacaatatcaatataacatttattatttt 11025033  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 420
Target Start/End: Complemental strand, 23915623 - 23915571
Alignment:
Q  368 ttttgtctcaaattatttgtcccttttacaataccaatgtaatatttattatt 420  Q
    |||||||| ||| |||||||||||||||||||||||||  || ||||||||||    
T  23915623 ttttgtcttaaaatatttgtcccttttacaataccaatacaacatttattatt 23915571  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 420
Target Start/End: Original strand, 7929989 - 7930040
Alignment:
Q  369 tttgtctcaaattatttgtcccttttacaataccaatgtaatatttattatt 420  Q
    |||||||||| |||||||||||||||||||||| |||  || ||||||||||    
T  7929989 tttgtctcaatttatttgtcccttttacaatactaatacaacatttattatt 7930040  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 422
Target Start/End: Original strand, 29121442 - 29121492
Alignment:
Q  372 gtctcaaattatttgtcccttttacaataccaatgtaatatttattatttt 422  Q
    |||||||||||||||||||||||||||||| |||  || ||||| ||||||    
T  29121442 gtctcaaattatttgtcccttttacaatactaatacaacatttactatttt 29121492  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 420
Target Start/End: Complemental strand, 54226022 - 54225971
Alignment:
Q  369 tttgtctcaaattatttgtcccttttacaataccaatgtaatatttattatt 420  Q
    |||||||| ||||| ||||||||||||||||||||||  || ||||||||||    
T  54226022 tttgtctcgaattacttgtcccttttacaataccaatacaacatttattatt 54225971  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 420
Target Start/End: Original strand, 23492789 - 23492850
Alignment:
Q  357 ttttctaattcttttgtctcaaattatttgtcccttttacaataccaatgtaatatttattatt 420  Q
    |||||||||| |||||||||||||||||||| ||||||||||||| |||  || ||||||||||    
T  23492789 ttttctaatt-ttttgtctcaaattatttgt-ccttttacaatacaaatacaacatttattatt 23492850  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 422
Target Start/End: Complemental strand, 38449304 - 38449250
Alignment:
Q  368 ttttgtctcaaattatttgtcccttttacaataccaatgtaatatttattatttt 422  Q
    |||||| ||||||||||||||  |||||||||||||||  || ||||||||||||    
T  38449304 ttttgtttcaaattatttgtctattttacaataccaatacaacatttattatttt 38449250  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 15873573 - 15873622
Alignment:
Q  369 tttgtctcaaattatttgtcccttttacaataccaatgtaatatttatta 418  Q
    ||||||||||||||||||||||||||| |||| ||||  || ||||||||    
T  15873573 tttgtctcaaattatttgtcccttttataatatcaatacaacatttatta 15873622  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 394
Target Start/End: Complemental strand, 42363958 - 42363890
Alignment:
Q  326 atactcactttgtcttagaataggtgtcattttttctaattcttttgtctcaaattatttgtccctttt 394  Q
    |||||| ||| |||||| |||||||||||| ||  ||| ||  ||||||||||||||||||||| ||||    
T  42363958 atactcccttcgtcttataataggtgtcatcttaactactttctttgtctcaaattatttgtccatttt 42363890  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 401
Target Start/End: Original strand, 44122156 - 44122189
Alignment:
Q  368 ttttgtctcaaattatttgtcccttttacaatac 401  Q
    |||||||||||||||||||||||||||| |||||    
T  44122156 ttttgtctcaaattatttgtcccttttataatac 44122189  T

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