View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1790_low_6 (Length: 357)
Name: NF1790_low_6
Description: NF1790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1790_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 3593955 - 3594247
Alignment:
| Q |
16 |
atccatcaccaccatatgtagcttttgatgacgcggtaaagggcacctaattccttttgcagctatcctgcactcggatatagaaaagcttaggcaaaat |
115 |
Q |
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| T |
3593955 |
atccatcaccaccatatgtagcttttgatgacgcggtttagggcacctaattccttttgcagctatcctgcactcggatatagaaaagcttaggcaaaat |
3594054 |
T |
|
| Q |
116 |
gagtaattgaacccttgtatattcgaaaaatatgaaagaatgaaaaaatagcatatgcaaacctataaagattcttgagttccttttctgcccatgtttt |
215 |
Q |
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| T |
3594055 |
gagtaattgaacccttgtatattggaaaaatatgaaagaatgaaaaaatagcatatgcaaacctataaagattcttgagttccttttctgcccatgtttt |
3594154 |
T |
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| Q |
216 |
tcccatttctctgggattacgactacagtaggcacgttcaaagcggcgatctcctttgacatatttatttctatccctgaaatccaatgagat |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3594155 |
tcccatttctctgggattacgactacagtaggcacgttcaaagcggcgatctcctttgacatatttatttctatccctgaaatccaatgagat |
3594247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 295
Target Start/End: Original strand, 28933872 - 28934014
Alignment:
| Q |
153 |
gaatgaaaaaatagcatatgcaaacctataaagattcttgagttccttttctgcccatgtttttcccatttctctgggattacgactacagtaggcacgt |
252 |
Q |
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||||||||||| |||| |||||||||| ||||||| | |||||||||||||||||||||| |||||| || ||||||| | |||||| | | |
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| T |
28933872 |
gaatgaaaaaagagcaaatgcaaacctcgaaagattactcctttccttttctgcccatgtttttaccatttttcggggattagacccacagtactcgttt |
28933971 |
T |
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| Q |
253 |
tcaaagcggcgatctcctttgacatatttatttctatccctga |
295 |
Q |
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| T |
28933972 |
tcaaaccggcgatctcctttcacatatctagctctatccctga |
28934014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 35714940 - 35714861
Alignment:
| Q |
155 |
atgaaaaaatagcatatgcaaacctataaagattcttgagttccttttctgcccatgtttttcccatttctctgggatta |
234 |
Q |
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|||||| || |||| |||||||||| | ||||||| ||| ||||||||||||||||||||| |||||| || ||||||| |
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| T |
35714940 |
atgaaataagagcaaatgcaaacctcttaagattcctgaattccttttctgcccatgttttaaccatttttcggggatta |
35714861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 8490531 - 8490590
Alignment:
| Q |
248 |
cacgttcaaagcggcgatctcctttgacatatttatttctatccctgaaatccaatgagat |
308 |
Q |
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| T |
8490531 |
cacgttcaaagtggcaatctcctttgacatatttttttctatccctgatat-caatgagat |
8490590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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