View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1790_low_7 (Length: 330)
Name: NF1790_low_7
Description: NF1790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1790_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 3594569 - 3594274
Alignment:
| Q |
20 |
aacaataatctgtttcagcatattaatggatgcatttcaactggaaaagaagtatgct------------acacgtttcagttttctgtcattttgtcat |
107 |
Q |
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| T |
3594569 |
aacaataatctgtttcagcatattaatggatgcatttcaactggaaaagaagtatgcttttattttattcacacgtttcagttttctgtcatcttgtcat |
3594470 |
T |
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| Q |
108 |
tacagttttataacatggacttgatgtgatgcatgtccataattatcaggcaaatgtttatcatgctaccgattctgatggtcaagaatatgcaattaaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3594469 |
tacagttttataacatggacttgatgtgatgcatgtccataattatcaggcaaatgtttatcatgctaccgattccgatggtcaagaatatgcaattaaa |
3594370 |
T |
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| Q |
208 |
atacacaaaacatctgttctgggatttaagtaagtaccttgcttgcgtaattcattgttctaacttctcaacgctgaaagttacacaggctactattatc |
307 |
Q |
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| T |
3594369 |
atacacaaaacatctgttctgggatttaagtaagtacc----ttgcgtaattgatcgttctaacttctcaacgctgaaagttacacaggctactattatc |
3594274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 28934243 - 28934153
Alignment:
| Q |
154 |
caggcaaatgtttatcatgctaccgattctgatggtcaagaatatgcaattaaaatacacaaaacatctgttctgggatttaagtaagtac |
244 |
Q |
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| T |
28934243 |
caggcaaatgtttatcatgctacaaaatccgatggtcgagaacttgcaattaaaatatacaaaacatctgttctggcatttaagtgagtac |
28934153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 35714611 - 35714666
Alignment:
| Q |
189 |
tcaagaatatgcaattaaaatacacaaaacatctgttctgggatttaagtaagtac |
244 |
Q |
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| T |
35714611 |
tcaagaacttgcaattaaaatatacaaaacatctgttctggtatttaagtaagtac |
35714666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 28934427 - 28934396
Alignment:
| Q |
44 |
aatggatgcatttcaactggaaaagaagtatg |
75 |
Q |
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| T |
28934427 |
aatggatgcatttcaactggaaaagaagtatg |
28934396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 35714181 - 35714226
Alignment:
| Q |
30 |
tgtttcagcatattaatggatgcatttcaactggaaaagaagtatg |
75 |
Q |
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||||||| |||| ||||||||||||||||||||||| |||||||| |
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| T |
35714181 |
tgtttcaagatatgaatggatgcatttcaactggaaaggaagtatg |
35714226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 149 - 307
Target Start/End: Complemental strand, 8490772 - 8490618
Alignment:
| Q |
149 |
attatcaggcaaatgtttatcatgctaccgattctgatggtcaagaatatgcaattaaaatacacaaaacatctgttctgggatttaagtaagtaccttg |
248 |
Q |
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||||||||| |||||||||||||| |||| |||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8490772 |
attatcaggaaaatgtttatcatgataccaattccgatggtaaagaatatgcaattaaaataaacaaaacatctgttctgggatttaagtaagtacc--- |
8490676 |
T |
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| Q |
249 |
cttgcgtaattcattgttctaacttctcaacgctgaaagttacacaggctactattatc |
307 |
Q |
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||||||| || ||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
8490675 |
-ttgcgtatttgattgttctaacttctgaacgctgaaagttacacaggatactattatc |
8490618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 8490945 - 8490889
Alignment:
| Q |
19 |
gaacaataatctgtttcagcatattaatggatgcatttcaactggaaaagaagtatg |
75 |
Q |
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| T |
8490945 |
gaacaataatctgtttcagcatattaatggatgcatttcaactggaaaagaagtatg |
8490889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 8490857 - 8490804
Alignment:
| Q |
82 |
gtttcagttttctgtcattttgtcattacagttt--tataacatggacttgatg |
133 |
Q |
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| T |
8490857 |
gtttcagttttctgtcatcttgtcattacagttttatataacatggacttgatg |
8490804 |
T |
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