View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1790_low_9 (Length: 313)
Name: NF1790_low_9
Description: NF1790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1790_low_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 183 - 313
Target Start/End: Original strand, 55068696 - 55068826
Alignment:
| Q |
183 |
tgagtttgatctaacagaacatcaagagtcgagatctcattctcggttgaaagatacgttcatatttaatattaagtaatgctttgattaggaccaactt |
282 |
Q |
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| T |
55068696 |
tgagtttgatctaatagaacatcaagagtcgagatctcattctcggttgaaagatacgttcatatttaatattaagtaatgcttagattaggaccaactt |
55068795 |
T |
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| Q |
283 |
cgttatagggaacttgcaggaagccaaaaaa |
313 |
Q |
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| T |
55068796 |
cgttatagtgaacttgtgggaagccaaaaaa |
55068826 |
T |
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Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 55068523 - 55068639
Alignment:
| Q |
10 |
attatactacataagtctactaagtgatccgtgcgaccatgccaatcatgtattatctttcactcataaaaatataaatcattttgtaatatgatattac |
109 |
Q |
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| T |
55068523 |
attataataaataagtctactaagtgatctgtgcgaccatgccaatcatgtattatctttaactcataaaaatataaatcattttgtaatatgatattac |
55068622 |
T |
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| Q |
110 |
ttttatttatatcacta |
126 |
Q |
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| T |
55068623 |
ttttatttatatcacta |
55068639 |
T |
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