View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17910_high_1 (Length: 614)

Name: NF17910_high_1
Description: NF17910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17910_high_1
NF17910_high_1
[»] chr6 (11 HSPs)
chr6 (2-449)||(19544775-19545208)
chr6 (527-614)||(19545286-19545373)
chr6 (386-443)||(22395459-22395516)
chr6 (381-430)||(26587846-26587895)
chr6 (139-258)||(7680381-7680500)
chr6 (386-429)||(14746620-14746663)
chr6 (550-613)||(22395621-22395684)
chr6 (527-611)||(20733384-20733468)
chr6 (381-430)||(26588163-26588212)
chr6 (542-614)||(27852031-27852104)
chr6 (537-613)||(14746424-14746500)
[»] chr4 (29 HSPs)
chr4 (2-449)||(18554351-18554784)
chr4 (2-444)||(13268074-13268507)
chr4 (527-614)||(18554862-18554949)
chr4 (527-614)||(13267887-13267974)
chr4 (96-258)||(30274903-30275065)
chr4 (529-614)||(13235114-13235199)
chr4 (539-614)||(20872382-20872459)
chr4 (529-614)||(12230694-12230774)
chr4 (527-614)||(13559511-13559598)
chr4 (531-614)||(22201299-22201384)
chr4 (380-444)||(13559360-13559424)
chr4 (384-444)||(15870945-15871005)
chr4 (381-444)||(12230863-12230926)
chr4 (527-614)||(15888680-15888758)
chr4 (387-444)||(19727534-19727591)
chr4 (386-429)||(17419551-17419594)
chr4 (527-603)||(9886806-9886885)
chr4 (137-258)||(16714075-16714196)
chr4 (527-614)||(10057500-10057587)
chr4 (384-444)||(15888520-15888580)
chr4 (527-614)||(15871105-15871182)
chr4 (391-429)||(9886991-9887029)
chr4 (389-429)||(20872219-20872259)
chr4 (259-315)||(30275045-30275101)
chr4 (352-431)||(18551033-18551111)
chr4 (142-188)||(17339375-17339421)
chr4 (380-429)||(13235293-13235342)
chr4 (527-611)||(18453632-18453717)
chr4 (381-429)||(30275171-30275219)
[»] scaffold0094 (2 HSPs)
scaffold0094 (2-449)||(2131-2563)
scaffold0094 (527-614)||(2641-2728)
[»] chr2 (13 HSPs)
chr2 (2-441)||(18984899-18985329)
chr2 (531-613)||(18985377-18985459)
chr2 (531-614)||(22497352-22497438)
chr2 (82-258)||(23212010-23212185)
chr2 (527-602)||(26861358-26861433)
chr2 (352-430)||(26861178-26861256)
chr2 (381-444)||(29718092-29718155)
chr2 (527-614)||(34858332-34858419)
chr2 (527-614)||(34873394-34873481)
chr2 (542-614)||(27473281-27473354)
chr2 (561-602)||(13361863-13361904)
chr2 (365-429)||(18784118-18784182)
chr2 (381-421)||(22497195-22497234)
[»] chr8 (15 HSPs)
chr8 (257-430)||(10453942-10454116)
chr8 (4-258)||(26858819-26859079)
chr8 (131-258)||(10453848-10453964)
chr8 (375-430)||(15727826-15727881)
chr8 (527-614)||(10454229-10454317)
chr8 (531-612)||(1683100-1683182)
chr8 (527-614)||(22237190-22237277)
chr8 (538-608)||(15727628-15727699)
chr8 (134-172)||(15728067-15728105)
chr8 (542-602)||(19807548-19807609)
chr8 (538-614)||(19862152-19862229)
chr8 (369-418)||(19862363-19862412)
chr8 (538-614)||(19866789-19866866)
chr8 (369-418)||(19867000-19867049)
chr8 (561-614)||(26859384-26859437)
[»] chr7 (14 HSPs)
chr7 (131-258)||(48379123-48379250)
chr7 (131-258)||(13773603-13773730)
chr7 (527-614)||(11800121-11800208)
chr7 (5-218)||(2243260-2243479)
chr7 (527-614)||(9693134-9693221)
chr7 (380-444)||(9692983-9693047)
chr7 (386-444)||(16068058-16068116)
chr7 (209-258)||(15864949-15864998)
chr7 (527-612)||(16379171-16379257)
chr7 (542-614)||(11091472-11091545)
chr7 (330-401)||(15865053-15865124)
chr7 (257-299)||(15864976-15865018)
chr7 (4-56)||(13474765-13474817)
chr7 (330-393)||(48379008-48379071)
[»] chr3 (25 HSPs)
chr3 (132-258)||(17958927-17959053)
chr3 (131-258)||(14057445-14057572)
chr3 (131-254)||(16932729-16932852)
chr3 (527-614)||(22161612-22161699)
chr3 (531-614)||(10302611-10302694)
chr3 (527-614)||(21999417-21999504)
chr3 (527-613)||(10340938-10341024)
chr3 (527-614)||(21976986-21977073)
chr3 (531-613)||(27868423-27868505)
chr3 (531-614)||(19186664-19186747)
chr3 (54-258)||(16928759-16928963)
chr3 (83-258)||(14479222-14479397)
chr3 (380-444)||(10302774-10302838)
chr3 (381-430)||(19186851-19186900)
chr3 (380-428)||(10341127-10341175)
chr3 (384-444)||(21977160-21977220)
chr3 (384-444)||(21999591-21999651)
chr3 (384-444)||(22161786-22161846)
chr3 (527-614)||(52988998-52989085)
chr3 (527-614)||(16357977-16358055)
chr3 (381-430)||(16357816-16357864)
chr3 (528-613)||(21028662-21028748)
chr3 (381-430)||(16928619-16928668)
chr3 (367-403)||(14479486-14479522)
chr3 (330-401)||(17959107-17959178)
[»] chr1 (14 HSPs)
chr1 (134-258)||(51624630-51624754)
chr1 (55-258)||(10390166-10390369)
chr1 (550-614)||(15544163-15544227)
chr1 (527-614)||(17451272-17451362)
chr1 (380-428)||(21496633-21496681)
chr1 (527-613)||(21995804-21995890)
chr1 (125-172)||(24852447-24852494)
chr1 (381-430)||(17451474-17451523)
chr1 (381-415)||(15545327-15545361)
chr1 (137-191)||(43154161-43154215)
chr1 (550-587)||(21496450-21496487)
chr1 (368-417)||(43154372-43154421)
chr1 (136-172)||(15545554-15545590)
chr1 (527-614)||(31344039-31344127)
[»] scaffold0003 (2 HSPs)
scaffold0003 (131-258)||(132913-133040)
scaffold0003 (330-401)||(132790-132861)
[»] scaffold0290 (3 HSPs)
scaffold0290 (527-613)||(11993-12079)
scaffold0290 (2-125)||(11702-11832)
scaffold0290 (389-441)||(11838-11890)
[»] scaffold0091 (2 HSPs)
scaffold0091 (132-258)||(31380-31506)
scaffold0091 (330-401)||(31256-31327)
[»] scaffold0063 (2 HSPs)
scaffold0063 (131-258)||(25846-25973)
scaffold0063 (330-401)||(26014-26085)
[»] scaffold0385 (2 HSPs)
scaffold0385 (527-614)||(16013-16100)
scaffold0385 (381-444)||(16200-16263)
[»] scaffold0118 (2 HSPs)
scaffold0118 (527-614)||(11836-11924)
scaffold0118 (395-444)||(12011-12060)
[»] scaffold0218 (2 HSPs)
scaffold0218 (131-258)||(16727-16854)
scaffold0218 (329-401)||(16604-16676)
[»] chr5 (16 HSPs)
chr5 (111-261)||(24829661-24829811)
chr5 (527-614)||(23909048-23909135)
chr5 (527-612)||(13938830-13938917)
chr5 (527-611)||(14137821-14137906)
chr5 (386-438)||(25756303-25756355)
chr5 (366-444)||(14138005-14138083)
chr5 (386-444)||(25791883-25791941)
chr5 (383-445)||(32948866-32948927)
chr5 (137-258)||(13939172-13939293)
chr5 (112-237)||(14138192-14138315)
chr5 (384-430)||(25581329-25581374)
chr5 (381-430)||(13939029-13939078)
chr5 (527-613)||(25791694-25791782)
chr5 (135-191)||(23949805-23949861)
chr5 (381-429)||(24564977-24565025)
chr5 (537-602)||(25581498-25581565)
[»] scaffold0364 (1 HSPs)
scaffold0364 (380-445)||(14617-14682)
[»] scaffold0207 (1 HSPs)
scaffold0207 (384-445)||(737-797)
[»] scaffold0395 (1 HSPs)
scaffold0395 (527-614)||(11714-11801)
[»] scaffold0686 (1 HSPs)
scaffold0686 (527-614)||(1264-1351)
[»] scaffold0408 (2 HSPs)
scaffold0408 (386-429)||(15055-15098)
scaffold0408 (527-613)||(14860-14946)
[»] scaffold0074 (1 HSPs)
scaffold0074 (527-613)||(1764-1850)
[»] scaffold0032 (1 HSPs)
scaffold0032 (528-614)||(68122-68208)
[»] scaffold1043 (1 HSPs)
scaffold1043 (386-444)||(516-574)
[»] scaffold0153 (2 HSPs)
scaffold0153 (541-614)||(5125-5199)
scaffold0153 (541-614)||(12145-12219)
[»] scaffold0381 (2 HSPs)
scaffold0381 (527-603)||(11659-11738)
scaffold0381 (391-429)||(11515-11553)
[»] scaffold0174 (1 HSPs)
scaffold0174 (529-614)||(13462-13547)
[»] scaffold0149 (1 HSPs)
scaffold0149 (352-430)||(35443-35520)
[»] scaffold0048 (1 HSPs)
scaffold0048 (111-253)||(54490-54631)
[»] scaffold0010 (1 HSPs)
scaffold0010 (386-444)||(143158-143216)
[»] scaffold0670 (1 HSPs)
scaffold0670 (352-431)||(6503-6581)
[»] scaffold0035 (1 HSPs)
scaffold0035 (369-418)||(15389-15438)


Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 2 - 449
Target Start/End: Original strand, 19544775 - 19545208
Alignment:
Q  2 ggttaatattattattgatgctgctttagcttgattgttattttgttgttaagaa-------tattgatgaggattgataagtagtacgagaatttattt 94  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||       ||||||||||||||||||||||||||||||||||||||    
T  19544775 ggttaatattattattgatgctgctttagcttgaatgttattttgtttttaagaagatagaatattgatgaggattgataagtagtacgagaatttattt 19544874  T
Q  95 taaataaagagaggcatcaaaacaaaataaaatagtgtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaat 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19544875 taaataaagagaggcatcaaaacaaaataaaatagtgtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaat 19544974  T
Q  195 agaagagcagacaattataacaagtgattgacccaattataaatagaaacattaggagttagaatagaaacattaggagttagaagggtcacccttgttg 294  Q
    ||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||                     |||||||||| |||||||    
T  19544975 agaggaggagaaaattataacaagtgattgacccaattataaatagaaacattaggagtta---------------------gaagggtcactcttgttg 19545053  T
Q  295 aacgttgaaaatagagaagaggggaggagaaaaggagaaaccctagctgcgacggaatcaagccaaagctagaattttcgaaggaatcgaggtaaggggg 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  19545054 aacgttgaaaatagagaagaggggaggagaaaaggagaaaccctagctgcgacggaatcaagccaaaactggaattttcgaaggaatcgaggtaaggggg 19545153  T
Q  395 agaatctttgcactttagggtatcttaatctatgatatgagggttgtcttttaat 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19545154 agaatctttgcactttagggtatcttaatctatgatatgagggttgtcttttaat 19545208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 527 - 614
Target Start/End: Original strand, 19545286 - 19545373
Alignment:
Q  527 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19545286 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatctggtaggttaacgaagaattagtgtttgaatgataggg 19545373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 386 - 443
Target Start/End: Original strand, 22395459 - 22395516
Alignment:
Q  386 gtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtct 443  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||  |||||||||||    
T  22395459 gtaagggggagagtctttgcactttagggtatcttaatatatgatgggagggttgtct 22395516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 381 - 430
Target Start/End: Complemental strand, 26587895 - 26587846
Alignment:
Q  381 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatgat 430  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  26587895 tcgaggtaaaggggagaatcttttcactttagggtatcttaatctatgat 26587846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 7680381 - 7680500
Alignment:
Q  139 tgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaatagaagagcagacaattataacaagtgattgacccaattataaat 238  Q
    |||||||||||||||| ||||||||||||||||||| | |||||| |||||||| ||||   | ||| |||  ||||||||||  | ||| | |||||||    
T  7680381 tgtagaatataagttttaaataagtgggggaggggaagtgtaaaagaatagtgagtagagtggaagagaatcttaacaagtgaccggccctaatataaat 7680480  T
Q  239 agaaacattaggagttagaa 258  Q
    |||||  ||| |||||||||    
T  7680481 agaaaggttaagagttagaa 7680500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 429
Target Start/End: Complemental strand, 14746663 - 14746620
Alignment:
Q  386 gtaagggggagaatctttgcactttagggtatcttaatctatga 429  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  14746663 gtaagggggagaatctttgcactatagggtatcttaatctatga 14746620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 550 - 613
Target Start/End: Original strand, 22395621 - 22395684
Alignment:
Q  550 ttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgatagg 613  Q
    |||||||||||||||||||| |||||  ||||||||||| ||  ||||||||||||||||||||    
T  22395621 ttttagtcttaaaaagagtgaataatccggtaggttaacaaatgattagtgtttgaatgatagg 22395684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 611
Target Start/End: Original strand, 20733384 - 20733468
Alignment:
Q  527 ctagtttaggtttttgaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgata 611  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||||||||  ||||||| | ||| ||||||||||  |||||||    
T  20733384 ctagtttaggtttc-gaattgagtttctagtcttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgata 20733468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 381 - 430
Target Start/End: Complemental strand, 26588212 - 26588163
Alignment:
Q  381 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatgat 430  Q
    ||||||||||||||||  || || ||||||||||||||||||||||||||    
T  26588212 tcgaggtaagggggaggttcctttcactttagggtatcttaatctatgat 26588163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 542 - 614
Target Start/End: Complemental strand, 27852104 - 27852031
Alignment:
Q  542 gaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    ||||||||||| |||| |||||||||||||||||||  ||||||| | ||| ||||||||||  ||||||||||    
T  27852104 gaattgagtttctagtattaaaaagagtggataatacagtaggttgatgaataattagtgttataatgataggg 27852031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 613
Target Start/End: Complemental strand, 14746500 - 14746424
Alignment:
Q  537 tttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgatagg 613  Q
    ||||| |||||| |||||||||| ||||||||| | |||  ||||||||||| ||  |||||||||| |||||||||    
T  14746500 ttttttaattgaattttagtcttgaaaagagtgaacaattcggtaggttaacaaatgattagtgttttaatgatagg 14746424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 2 - 449
Target Start/End: Original strand, 18554351 - 18554784
Alignment:
Q  2 ggttaatattattattgatgctgctttagcttgattgttattttgttgttaagaa-------tattgatgaggattgataagtagtacgagaatttattt 94  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||       ||||||||||||||||||||||||||||||||||||||    
T  18554351 ggttaatattattattgatgctgctttagcttgaatgttattttgtttttaagaagatagaatattgatgaggattgataagtagtacgagaatttattt 18554450  T
Q  95 taaataaagagaggcatcaaaacaaaataaaatagtgtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaat 194  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18554451 taaataaagagaggcatcaaaacaaaataaaatagtgttggaggtgtagaatataagtttcaaataactgggggaggggatgagtaaaataatagtgaat 18554550  T
Q  195 agaagagcagacaattataacaagtgattgacccaattataaatagaaacattaggagttagaatagaaacattaggagttagaagggtcacccttgttg 294  Q
    ||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||                     |||||||||| |||||||    
T  18554551 agaggaggagaaaattataacaagtgattgacccaattataaatagaaacattaggagtta---------------------gaagggtcactcttgttg 18554629  T
Q  295 aacgttgaaaatagagaagaggggaggagaaaaggagaaaccctagctgcgacggaatcaagccaaagctagaattttcgaaggaatcgaggtaaggggg 394  Q
    |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  18554630 attgttgaaaatagagaagaggggaggagaaaaggagaaaccctagctgcgacggaatcaagccaaagctggaattttcgaagggatcgaggtaaggggg 18554729  T
Q  395 agaatctttgcactttagggtatcttaatctatgatatgagggttgtcttttaat 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18554730 agaatctttgcactttagggtatcttaatctatgatatgagggttgtcttttaat 18554784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 2 - 444
Target Start/End: Complemental strand, 13268507 - 13268074
Alignment:
Q  2 ggttaatattattattgatgctgctttagcttgattgttattttgttgttaa-------gaatattgatgaggattgataagtagtacgagaatttattt 94  Q
    ||||| |||||||||||||||||||||||||||| | |||||||||||||||       |||||||||||||||||||||||||||| |||||||||  |    
T  13268507 ggttagtattattattgatgctgctttagcttgaatattattttgttgttaaaaagatagaatattgatgaggattgataagtagtatgagaatttaaat 13268408  T
Q  95 taaataaagagaggcatcaaaacaaaataa-----aatagtgtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatag 189  Q
    |||||||||||| | |||||||||||| ||     |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  13268407 taaataaagagatgaatcaaaacaaaaaaataaaaaatagtgtcggaggtgtagaatataagtttcaaataagtgggagaggggaggagtaaaagaatag 13268308  T
Q  190 tgaatagaagagcagacaattataacaagtgattgacccaattataaatagaaacattaggagttagaatagaaacattaggagttagaagggtcaccct 289  Q
    ||||  || ||| ||| ||||||||||||||||||||||| ||||||||                     |||||||||| || |||||||||| ||  |    
T  13268307 tgaacggaggagaagaaaattataacaagtgattgacccacttataaat---------------------agaaacattatgaattagaagggttacttt 13268229  T
Q  290 tgttgaacgttgaaaatagagaagaggggaggagaaaaggagaaaccctagctgcgacggaatcaagccaaagctagaattttcgaaggaatcgaggtaa 389  Q
    || | ||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | |||||||||||||    
T  13268228 tgctcaacgtggaaaatagagaagagggtaggagaaaaggagaaaccctagctgggacggaatcaagccaaagctggaattttcaagggaatcgaggtaa 13268129  T
Q  390 gggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtctt 444  Q
    |||||||||||||||||||||||||||||||||| ||||||  ||||||| ||||    
T  13268128 gggggagaatctttgcactttagggtatcttaatttatgatgggagggttttctt 13268074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 527 - 614
Target Start/End: Original strand, 18554862 - 18554949
Alignment:
Q  527 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18554862 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatctggtaggttaacgaagaattagtgtttgaatgataggg 18554949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 527 - 614
Target Start/End: Complemental strand, 13267974 - 13267887
Alignment:
Q  527 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  13267974 ctagtttagatttttgaattgagttttagtcttaaaaaaagtggataatcaggtaggttaacgaagaattagtttttgaatgataggg 13267887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 96 - 258
Target Start/End: Original strand, 30274903 - 30275065
Alignment:
Q  96 aaataaagagaggcatcaaaacaaaataaaatagtgtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaata 195  Q
    |||| ||| |||| ||||||| ||||||| |||| |||| ||||||||||||||||||| ||||||||||||||||||   ||||||| |||| ||||||    
T  30274903 aaatgaagggaggaatcaaaataaaataatatagagtcgaaggtgtagaatataagttttaaataagtgggggaggggggaagtaaaagaatactgaata 30275002  T
Q  196 gaagagcagacaattataacaagtgattgacccaattataaatagaaacattaggagttagaa 258  Q
    || ||| | |  |||||| ||||||  || ||||| ||||| |||||||||||||||||||||    
T  30275003 gaggagaaaatgattatagcaagtggctggcccaaatataagtagaaacattaggagttagaa 30275065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 529 - 614
Target Start/End: Complemental strand, 13235199 - 13235114
Alignment:
Q  529 agtttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||| ||||||||| ||||||||||||    
T  13235199 agtttaggtttttgaattgagttttagtcttaaaaagagtggatatttcggtaggttaacgaataattagtgtatgaatgataggg 13235114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 539 - 614
Target Start/End: Original strand, 20872382 - 20872459
Alignment:
Q  539 tttgaattgagttttagt--cttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||||||||||  |  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20872382 tttgaattgagtttttttgacttaaaaagagtggataatctggtaggttaacgaagaattagtgtttgaatgataggg 20872459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 529 - 614
Target Start/End: Complemental strand, 12230774 - 12230694
Alignment:
Q  529 agtttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||| ||||||||||||| ||||||     ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12230774 agtttatgtttttgaattgaattttag-----aaaagagtggataatctggtaggttaacgaagaattagtgtttgaatgataggg 12230694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 527 - 614
Target Start/End: Original strand, 13559511 - 13559598
Alignment:
Q  527 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||| |||||| ||||||||||||| ||| ||||||||||||||| ||||||||||| ||| |||| || ||||||||||||||    
T  13559511 ctagtttaagttttttaattgagttttagcctttaaaagagtggataatctggtaggttaatgaataattggtatttgaatgataggg 13559598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 531 - 614
Target Start/End: Complemental strand, 22201384 - 22201299
Alignment:
Q  531 tttaggtttttgaattgagtttt--agtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||||||||||| ||||||  |  |||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||    
T  22201384 tttaggtttttgaattaagttttttaaccttaaaaagagttgataatctggtaggttaacgaagaattagtgtttaaatgataggg 22201299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 380 - 444
Target Start/End: Original strand, 13559360 - 13559424
Alignment:
Q  380 atcgaggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtctt 444  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||    
T  13559360 atcgaggtaaggaggagaatctttgcactttagagtatcttaatctatgatgggagggttgtctt 13559424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 384 - 444
Target Start/End: Original strand, 15870945 - 15871005
Alignment:
Q  384 aggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtctt 444  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||    
T  15870945 aggtaagggggagaatctttgcactttagggtatcttaatttatgatgggagggttgtctt 15871005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 381 - 444
Target Start/End: Complemental strand, 12230926 - 12230863
Alignment:
Q  381 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtctt 444  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  12230926 tcgaggtaagggggataatctttgcactttagggtatcttaatctattatgggagggttgtctt 12230863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 527 - 614
Target Start/End: Original strand, 15888680 - 15888758
Alignment:
Q  527 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    ||||||||||||||||||||||||||||||         ||||||||||  |||||||||||||||||||||||||| ||||||||||    
T  15888680 ctagtttaggtttttgaattgagttttagt---------agtggataatcaggtaggttaacgaagaattagtgtttcaatgataggg 15888758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 387 - 444
Target Start/End: Original strand, 19727534 - 19727591
Alignment:
Q  387 taagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtctt 444  Q
    ||||| |||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  19727534 taaggcggagaatctttgcactttagggtatcttaatctatgacgggagggttgtctt 19727591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 429
Target Start/End: Complemental strand, 17419594 - 17419551
Alignment:
Q  386 gtaagggggagaatctttgcactttagggtatcttaatctatga 429  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  17419594 gtaaggggaagaatctttgcactttagggtatcttaatctatga 17419551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 603
Target Start/End: Complemental strand, 9886885 - 9886806
Alignment:
Q  527 ctagtttaggtttttgaattgagtttt---agtcttaaaaagagtggataatatggtaggttaacgaagaattagtgttt 603  Q
    |||||||| ||||||||||||||||||   || ||||||| |||||||||||  |||| |||||| ||||||||||||||    
T  9886885 ctagtttatgtttttgaattgagtttttttagccttaaaatgagtggataatccggtaagttaacaaagaattagtgttt 9886806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 16714196 - 16714075
Alignment:
Q  137 ggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaatagaagagcagacaattataacaagtgattgacccaattataa 236  Q
    |||||| ||||||||||| |||||||||||||||||    ||||||| |||||||| |||| |||   | ||||| ||||||||| |  ||| | |||||    
T  16714196 ggtgtataatataagttttaaataagtgggggagggaggaagtaaaagaatagtgagtagaggagataagaattacaacaagtgactttcccgaatataa 16714097  T
Q  237 atagaaacattaggagttagaa 258  Q
    |||||||| |||| ||||||||    
T  16714096 atagaaaccttagaagttagaa 16714075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 527 - 614
Target Start/End: Complemental strand, 10057587 - 10057500
Alignment:
Q  527 ctagtttaggtttttgaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||||||||  ||||||| | ||| |||||| |||  ||||||||||    
T  10057587 ctagtttaggtttc-gaattgagtttctagtcttaaaaagagtggataatacagtaggttgatgaataattagagttataatgataggg 10057500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 444
Target Start/End: Original strand, 15888520 - 15888580
Alignment:
Q  384 aggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtctt 444  Q
    ||||||| |||||||||||||||||||||| ||||| ||| ||||||  ||||||||||||    
T  15888520 aggtaagagggagaatctttgcactttaggatatctaaatttatgatgggagggttgtctt 15888580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 527 - 614
Target Start/End: Original strand, 15871105 - 15871182
Alignment:
Q  527 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    ||||||||||||||||||||||||||||||         ||||||||||  ||||||||||| |||||||||||||| ||||||||||    
T  15871105 ctagtttaggtttttgaattgagttttagt---------agtggataatcaggtaggttaac-aagaattagtgtttcaatgataggg 15871182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 429
Target Start/End: Complemental strand, 9887029 - 9886991
Alignment:
Q  391 ggggagaatctttgcactttagggtatcttaatctatga 429  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  9887029 ggggagaatctttgcactttagggtatcttaatatatga 9886991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 389 - 429
Target Start/End: Original strand, 20872219 - 20872259
Alignment:
Q  389 agggggagaatctttgcactttagggtatcttaatctatga 429  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  20872219 agggggagaatctttgcacttttgggtatcttaatatatga 20872259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 30275045 - 30275101
Alignment:
Q  259 tagaaacattaggagttagaagggtcacccttgttgaacgttgaaaatagagaagag 315  Q
    |||||||||||||||||||||| |||||  ||||||||||| ||||  |||||||||    
T  30275045 tagaaacattaggagttagaagtgtcacttttgttgaacgtagaaacaagagaagag 30275101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 431
Target Start/End: Original strand, 18551033 - 18551111
Alignment:
Q  352 tcaagccaaagctagaattttcgaaggaatcgaggtaagggggagaatctttgcactttagggtatcttaatctatgata 431  Q
    |||||||||| | ||| ||||||||||| ||||||||||||||||| |  |  ||||||||||| | |||||||||||||    
T  18551033 tcaagccaaaaccagatttttcgaaggattcgaggtaagggggagattactaccactttagggtgt-ttaatctatgata 18551111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 17339421 - 17339375
Alignment:
Q  142 agaatataagtttcaaataagtgggggaggggatgagtaaaataata 188  Q
    ||||||||||||| ||||||||||||||||||| | |||||| ||||    
T  17339421 agaatataagttttaaataagtgggggaggggaggtgtaaaagaata 17339375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 429
Target Start/End: Complemental strand, 13235342 - 13235293
Alignment:
Q  380 atcgaggtaagggggagaatctttgcactttagggtatcttaatctatga 429  Q
    ||||||||||  ||| |||||||||||||||||||||| ||||| |||||    
T  13235342 atcgaggtaaacgggggaatctttgcactttagggtatattaatttatga 13235293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 611
Target Start/End: Complemental strand, 18453717 - 18453632
Alignment:
Q  527 ctagtttaggtttttgaattgagt-tttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgata 611  Q
    |||||||||| ||||||||||||| | ||| ||||||||| || ||||||| | | |||||| | || ||||||||| ||||||||    
T  18453717 ctagtttagggttttgaattgagtctatagacttaaaaagtgtagataataagatgggttaatggaggattagtgttggaatgata 18453632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 429
Target Start/End: Original strand, 30275171 - 30275219
Alignment:
Q  381 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatga 429  Q
    |||||||||| ||||||||| || |||||||||||| |||| |||||||    
T  30275171 tcgaggtaagtgggagaatcatttcactttagggtaacttattctatga 30275219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 2 - 449
Target Start/End: Original strand, 2131 - 2563
Alignment:
Q  2 ggttaatattattattgatgctgctttagcttgattgttattttgttgttaagaa-------tattgatgaggattgataagtagtacgagaatttattt 94  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||       ||||||||| ||||||||||||||||||||||||||||    
T  2131 ggttaatattattattgatgctgctttagcttgaatgttattttgttgttaagaagatagaatattgatgatgattgataagtagtacgagaatttattt 2230  T
Q  95 taaataaagagaggcatcaaaacaaaataaaatagtgtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaat 194  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2231 taaataaggagaggaatcaaaacaaaataaaatagtgtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaac 2330  T
Q  195 agaagagcagacaattataacaagtgattgacccaattataaatagaaacattaggagttagaatagaaacattaggagttagaagggtcacccttgttg 294  Q
    ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||                     ||| |||||||||  ||| ||    
T  2331 agaggaggagaaaattataacaagtgattgacccaattataaatagaaacattaggag---------------------ttataagggtcacttttgctg 2409  T
Q  295 aacgttgaaaatagagaagaggggaggagaaaaggagaaaccctagctgcgacggaatcaagccaaagctagaattttcgaaggaatcgaggtaaggggg 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  2410 aacgttgaaaatagagaagaggggaggagaaaaggagaaaccctagctgtgacggaatcaagccaaagctggaattttcaaaggaatcgaggtaaggggg 2509  T
Q  395 agaatctttgcactttagggtatcttaatctatgatatgagggttgtcttttaat 449  Q
    |||||||||||| |||||||||||||||||||||||||||||||| | |||||||    
T  2510 agaatctttgca-tttagggtatcttaatctatgatatgagggttatattttaat 2563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 527 - 614
Target Start/End: Original strand, 2641 - 2728
Alignment:
Q  527 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  2641 ctagtttaagtttttgaattgagttttagtcttaaaaagagtggataatctggcaggttaacgaagaattagtgtttgaataataggg 2728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 2 - 441
Target Start/End: Original strand, 18984899 - 18985329
Alignment:
Q  2 ggttaatattattattgatgctgctttagcttgattgttattttgttgttaagaa-------tattgatgaggattgataagtagtacgagaatttattt 94  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||       ||||||||||||||||||||||||| |||||||||| |    
T  18984899 ggttaatattattattgatgctgctttagcttgaatgttattttgttgttaagaagatagaatattgatgaggattgataagtagtatgagaatttatat 18984998  T
Q  95 taaataaagagaggcatcaaaacaaaataaaatagtgtcggaggtgtagaatataagtttcaaataagtgggggaggggatg-----agtaaaataatag 189  Q
    ||||||||| |||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |     ||||||| |||||    
T  18984999 taaataaagtgaggaatcaaaacaagataaaatagtgtcgggggtgtagaatataagtttcaaataagtgggggaggggaggggaggagtaaaagaatag 18985098  T
Q  190 tgaatagaagagcagacaattataacaagtgattgacccaattataaatagaaacattaggagttagaatagaaacattaggagttagaagggtcaccct 289  Q
    |||| | | ||  ||| ||||||||||||||||||||||||||||||||||||||||||||| |||                     |||||||| |  |    
T  18985099 tgaaaaaaggataagaaaattataacaagtgattgacccaattataaatagaaacattaggattta---------------------gaagggtcgcttt 18985177  T
Q  290 tgttgaacgttgaaaatagagaagaggggaggagaaaaggagaaaccctagctgcgacggaatcaagccaaagctagaattttcgaaggaatcgaggtaa 389  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| | |||||| ||||||||||||| |||    
T  18985178 tgttgaacgtggaaaatagagaagaggggaggagaaaaggagaaaccctagctgcaacggaatcaagctaaagttggaatttgcgaaggaatcgagataa 18985277  T
Q  390 gggggagaatctttgcactttagggtatcttaatctatgatatgagggttgt 441  Q
    |||||||||||||||||| |||||||||| |||||||||||| |||||||||    
T  18985278 gggggagaatctttgcacattagggtatcgtaatctatgataggagggttgt 18985329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 531 - 613
Target Start/End: Original strand, 18985377 - 18985459
Alignment:
Q  531 tttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgatagg 613  Q
    |||||||||| ||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  18985377 tttaggttttcgaattgagttttagttttaaaaagagtggacaatctggtaggttaacgaagaattagtgtttgaatgatagg 18985459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 531 - 614
Target Start/End: Original strand, 22497352 - 22497438
Alignment:
Q  531 tttaggtttttgaattgagtttt---agtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||||||||||||||||||   || ||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  22497352 tttaggtttttgaattgagtttttttagccttaaaaggagtggataatatggtaggttgacgaagaattagtgtttgaataataggg 22497438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 82 - 258
Target Start/End: Complemental strand, 23212185 - 23212010
Alignment:
Q  82 cgagaatttattttaaataaagagaggcatcaaaacaaaataaaatagtgtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaa 181  Q
    |||||||||| ||  ||| ||| ||||  |||||| |||||||  ||| ||||| |||||||||||||||||| ||||||  |||||| |||| ||||||    
T  23212185 cgagaatttaattataatgaagggaggagtcaaaataaaataacgtagagtcgggggtgtagaatataagttttaaataaa-gggggatgggaggagtaa 23212087  T
Q  182 aataatagtgaatagaagagcagacaattataacaagtgattgacccaattataaatagaaacattaggagttagaa 258  Q
    || |||||||| |||| | | ||| |||  ||||||||||  ||||| | ||||||||||||  |||||||||||||    
T  23212086 aagaatagtgagtagaggggaagagaatcttaacaagtgaccgaccccaatataaatagaaaagttaggagttagaa 23212010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 527 - 602
Target Start/End: Original strand, 26861358 - 26861433
Alignment:
Q  527 ctagtttaggtttttgaattgagtttt-agtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtt 602  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||| ||||    
T  26861358 ctagtttaggtttt-gaattgagtttttagtcttaaaaagagtggataatctggtaggttaatgaagaattaatgtt 26861433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 352 - 430
Target Start/End: Original strand, 26861178 - 26861256
Alignment:
Q  352 tcaagccaaagctagaattttcgaaggaatcgaggtaagggggagaatctttgcactttagggtatcttaatctatgat 430  Q
    |||||||||| | | | ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  26861178 tcaagccaaaaccatatttttcaaaggattcgaggtaagggggagattctttgcactttagggtatcttaatccatgat 26861256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 381 - 444
Target Start/End: Original strand, 29718092 - 29718155
Alignment:
Q  381 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtctt 444  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||   |||||||||||    
T  29718092 tcgaggtaagggggagaatatttgcactttagagtatcttaatctatgatggaagggttgtctt 29718155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 527 - 614
Target Start/End: Original strand, 34858332 - 34858419
Alignment:
Q  527 ctagtttaggtttttgaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||||||||  ||||||| | ||| ||||||||||  ||||||||||    
T  34858332 ctagtttaggtttc-gaattgagtttctagtcttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgataggg 34858419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 527 - 614
Target Start/End: Original strand, 34873394 - 34873481
Alignment:
Q  527 ctagtttaggtttttgaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||||||||  ||||||| | ||| ||||||||||  ||||||||||    
T  34873394 ctagtttaggtttc-gaattgagtttctagtcttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgataggg 34873481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 542 - 614
Target Start/End: Complemental strand, 27473354 - 27473281
Alignment:
Q  542 gaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||| | ||| ||||||||||  ||||||||||    
T  27473354 gaattgagtttctagtcttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgataggg 27473281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 602
Target Start/End: Complemental strand, 13361904 - 13361863
Alignment:
Q  561 aaaagagtggataatatggtaggttaacgaagaattagtgtt 602  Q
    ||||||||||||||| ||||||||||| | ||||||||||||    
T  13361904 aaaagagtggataatctggtaggttaatggagaattagtgtt 13361863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 429
Target Start/End: Original strand, 18784118 - 18784182
Alignment:
Q  365 agaattttcgaaggaatcgaggtaagggggagaatctttgcactttagggtatcttaatctatga 429  Q
    |||||||| |||||| | || |||||||||||||||| | ||| ||||||||| ||| |||||||    
T  18784118 agaatttttgaaggatttgatgtaagggggagaatctcttcacgttagggtattttattctatga 18784182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 421
Target Start/End: Original strand, 22497195 - 22497234
Alignment:
Q  381 tcgaggtaagggggagaatctttgcactttagggtatctta 421  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  22497195 tcgagctaagggggagaatctttgcac-ttagggtatctta 22497234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 257 - 430
Target Start/End: Original strand, 10453942 - 10454116
Alignment:
Q  257 aatagaaacattaggagttagaagggtcacccttgttgaacgttgaaaatagagaagaggggaggagaaaaggagaaaccctagctgcgacggaatcaag 356  Q
    ||||||||||||||||||||||||||||||  ||||||| |||  ||||  |||||||| |||||||| ||||||||||||||| ||||||| |||||||    
T  10453942 aatagaaacattaggagttagaagggtcacttttgttgaccgtgaaaaagggagaagagaggaggagataaggagaaaccctagttgcgacgaaatcaag 10454041  T
Q  357 ccaaagct-agaattttcgaaggaatcgaggtaagggggagaatctttgcactttagggtatcttaatctatgat 430  Q
    |||||||| | ||||| | || |||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  10454042 ccaaagctgaaaatttccaaaagaatcgaggtaaggggaagaatctttgaactttagggtatcttaatctatgat 10454116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 4 - 258
Target Start/End: Original strand, 26858819 - 26859079
Alignment:
Q  4 ttaatattattattgatgctgctttagcttgattgttattttgttgttaagaa-------tattgatgaggattgataagtagtacgagaatttatttta 96  Q
    |||||||||||||||||| |||||  ||||||   ||||||||||||| ||||       ||||||||| |||||| ||||| || |||||||||  | |    
T  26858819 ttaatattattattgatgttgcttgtgcttgagaattattttgttgttgagaaaatagaatattgatgatgattgagaagtaatatgagaatttaaataa 26858918  T
Q  97 aataaagagaggcatcaaaacaaaataaaatagtgtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaatag 196  Q
    ||| ||| |||   | ||| ||||||||  |||  | || |||||||||||||||||| |||||||||| |||||||| |||||||| |||||||| |||    
T  26858919 aatgaagtgagtagtgaaa-caaaataatttaggattgggggtgtagaatataagttttaaataagtggaggaggggaggagtaaaagaatagtgagtag 26859017  T
Q  197 aagagcagacaattataacaagtgattgacccaattataaatagaaacattaggagttagaa 258  Q
    | ||| ||| |||  ||||||||||  | ||||| ||||||||||||  |||||||||||||    
T  26859018 aggagaagagaatcttaacaagtgaccggcccaaatataaatagaaaggttaggagttagaa 26859079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 131 - 258
Target Start/End: Original strand, 10453848 - 10453964
Alignment:
Q  131 gtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaatagaagagcagacaattataacaagtgattgacccaa 230  Q
    ||||||||||||| |||||||||| ||||||||||||||||| |||||||||           |||| ||  ||| ||||||||||||||| ||||||||    
T  10453848 gtcggaggtgtaggatataagttttaaataagtgggggagggtatgagtaaa-----------tagaggaaaagaaaattataacaagtgactgacccaa 10453936  T
Q  231 ttataaatagaaacattaggagttagaa 258  Q
     |||||||||||||||||||||||||||    
T  10453937 atataaatagaaacattaggagttagaa 10453964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 375 - 430
Target Start/End: Complemental strand, 15727881 - 15727826
Alignment:
Q  375 aaggaatcgaggtaagggggagaatctttgcactttagggtatcttaatctatgat 430  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||    
T  15727881 aaggattcgaggtaagggggagaatccttacactttagggtatcttaatctatgat 15727826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 527 - 614
Target Start/End: Original strand, 10454229 - 10454317
Alignment:
Q  527 ctagtttaggtttttgaattgagtttt-agtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    ||||||| ||||||||||||||||||| || | |||| ||| | |||||| ||||||||||| |||||| ||||||||| |||||||||    
T  10454229 ctagtttcggtttttgaattgagtttttagccctaaagagaatagataatctggtaggttaatgaagaagtagtgtttggatgataggg 10454317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 531 - 612
Target Start/End: Complemental strand, 1683182 - 1683100
Alignment:
Q  531 tttaggtttttgaattgagt-tttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgatag 612  Q
    |||||||||| ||||||||| ||||| ||| |||||| | ||  || ||||||||||| ||||||||||||||||||||||||    
T  1683182 tttaggttttcgaattgagtgtttagcctttaaaagattagacgatctggtaggttaaagaagaattagtgtttgaatgatag 1683100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 527 - 614
Target Start/End: Original strand, 22237190 - 22237277
Alignment:
Q  527 ctagtttaggtttttgaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||||||||  ||||||| | ||| |||| |||||  ||||||||||    
T  22237190 ctagtttaggtttc-gaattgagtttctagtcttaaaaagagtggataatacagtaggttgatgaataattggtgttataatgataggg 22237277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 538 - 608
Target Start/End: Complemental strand, 15727699 - 15727628
Alignment:
Q  538 ttttgaattgagtttt-agtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatg 608  Q
    |||||||||||||||| | ||||||||||||||||||||  ||||||||||||||  | || ||||||||||    
T  15727699 ttttgaattgagtttttattcttaaaaagagtggataatccggtaggttaacgaatgactaatgtttgaatg 15727628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 172
Target Start/End: Complemental strand, 15728105 - 15728067
Alignment:
Q  134 ggaggtgtagaatataagtttcaaataagtgggggaggg 172  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  15728105 ggaggtgtagaatataagttttaaataagtgggggaggg 15728067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 542 - 602
Target Start/End: Original strand, 19807548 - 19807609
Alignment:
Q  542 gaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtt 602  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||| | ||| ||||||||||    
T  19807548 gaattgagtttctagtcttaaaaagagtggataatacagtaggttgatgaataattagtgtt 19807609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 614
Target Start/End: Complemental strand, 19862229 - 19862152
Alignment:
Q  538 ttttgaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    ||||||||||||| | ||| |||||||||  | ||||||  |||||||||||| ||||||| |||||||||| |||||    
T  19862229 ttttgaattgagtctatagccttaaaaaggttagataattaggtaggttaacggagaattaatgtttgaatgttaggg 19862152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 19862412 - 19862363
Alignment:
Q  369 ttttcgaaggaatcgaggtaagggggagaatctttgcactttagggtatc 418  Q
    ||||| ||||| ||||||||||||||||| || || ||||||||||||||    
T  19862412 ttttcaaaggattcgaggtaagggggagattcctttcactttagggtatc 19862363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 614
Target Start/End: Complemental strand, 19866866 - 19866789
Alignment:
Q  538 ttttgaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    ||||||||||||| | ||| |||||||||  | ||||||  |||||||||||| ||||||| |||||||||| |||||    
T  19866866 ttttgaattgagtctatagccttaaaaaggttagataattaggtaggttaacggagaattaatgtttgaatgttaggg 19866789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 19867049 - 19867000
Alignment:
Q  369 ttttcgaaggaatcgaggtaagggggagaatctttgcactttagggtatc 418  Q
    ||||| ||||| ||||||||||||||||| || || ||||||||||||||    
T  19867049 ttttcaaaggattcgaggtaagggggagattcctttcactttagggtatc 19867000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 614
Target Start/End: Original strand, 26859384 - 26859437
Alignment:
Q  561 aaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||||||||||  |||||||||| |||||||| |||||  ||||||||||    
T  26859384 aaaagagtggataatcgggtaggttaatgaagaattggtgttctaatgataggg 26859437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 131 - 258
Target Start/End: Complemental strand, 48379250 - 48379123
Alignment:
Q  131 gtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaatagaagagcagacaattataacaagtgattgacccaa 230  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||  |||||||||| | ||| ||| | |||||||| |||||||||||||    
T  48379250 gtcggaggtgtagaatataagttttaaataagtgggggaggggaggagtaaaagtatagtgaataaaggagaagaaagttataacatgtgattgacccaa 48379151  T
Q  231 ttataaatagaaacattaggagttagaa 258  Q
     |||||||||||||||||| ||||||||    
T  48379150 gtataaatagaaacattagaagttagaa 48379123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 131 - 258
Target Start/End: Original strand, 13773603 - 13773730
Alignment:
Q  131 gtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaatagaagagcagacaattataacaagtgattgacccaa 230  Q
    |||||||||||||||||||||||| |||||| |||||||||||| ||||||||  |||||||||| | ||| ||| | |||||||| |||||||||||||    
T  13773603 gtcggaggtgtagaatataagttttaaataaatgggggaggggaggagtaaaagtatagtgaataaaggagaagaaagttataacatgtgattgacccaa 13773702  T
Q  231 ttataaatagaaacattaggagttagaa 258  Q
     ||||||| |||||||||| ||||||||    
T  13773703 gtataaatggaaacattagaagttagaa 13773730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 527 - 614
Target Start/End: Original strand, 11800121 - 11800208
Alignment:
Q  527 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||| || ||||| ||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  11800121 ctagttaagcttttttaatagagttttagtcttaaaaagaatggataatctggtaggttaaagaagaattagtgtttcaatgataggg 11800208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 2243479 - 2243260
Alignment:
Q  5 taatattattattgatgctgctttagcttgattgttattttgttgttaagaa-------tattgatgaggattgataagtagtacgagaatttattttaa 97  Q
    ||||||||||||||||| || ||  ||||||  |||||||||||||| ||||       ||||||||| |||||  |||||||| |||||||||  | ||    
T  2243479 taatattattattgatgttgtttgtgcttgaacgttattttgttgttgagaaaatagaatattgatgatgattgtaaagtagtatgagaatttaaatgaa 2243380  T
Q  98 ataaagagaggcatcaaaacaaaataaaatagtgtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaataga 197  Q
    || ||||||||  |||||| |||| || |||| ||||  ||| |||||||||||||  |||||||||||| |||||| |||||||| |||||||| ||||    
T  2243379 atgaagagaggattcaaaataaaa-aatatagagtcgagggtatagaatataagttctaaataagtggggaaggggaggagtaaaagaatagtgagtaga 2243281  T
Q  198 agagcagacaattataacaag 218  Q
     ||| ||| |||| |||||||    
T  2243280 ggagaagaaaattgtaacaag 2243260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 527 - 614
Target Start/End: Original strand, 9693134 - 9693221
Alignment:
Q  527 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||| |||||| ||||||||||||| ||| ||||||||||||||| ||||||||||| ||| |||| || ||||||||||||||    
T  9693134 ctagtttaagttttttaattgagttttagcctttaaaagagtggataatctggtaggttaatgaataattggtatttgaatgataggg 9693221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 380 - 444
Target Start/End: Original strand, 9692983 - 9693047
Alignment:
Q  380 atcgaggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtctt 444  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||    
T  9692983 atcgaggtaaggaggagaatctttgcactttagagtatcttaatctatgatgggagggttgtctt 9693047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 16068058 - 16068116
Alignment:
Q  386 gtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtctt 444  Q
    ||||||||||||||||||||| ||||||||||||||||||||||   ||||||||||||    
T  16068058 gtaagggggagaatctttgcaatttagggtatcttaatctatgacgggagggttgtctt 16068116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 15864949 - 15864998
Alignment:
Q  209 ttataacaagtgattgacccaattataaatagaaacattaggagttagaa 258  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  15864949 ttataacatgtgattgacccaagtataaatagaaacattaggagttagaa 15864998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 527 - 612
Target Start/End: Original strand, 16379171 - 16379257
Alignment:
Q  527 ctagtttaggtttttgaattgag-ttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgatag 612  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||| ||||   |||||||||| ||  || ||||||| ||||||||    
T  16379171 ctagtttaggtttttgaattgagtttttagttttaaaaagagtggctaatccagtaggttaacaaacgataagtgttttaatgatag 16379257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 542 - 614
Target Start/End: Complemental strand, 11091545 - 11091472
Alignment:
Q  542 gaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    ||||||||||| ||||||||||||||||||||||||   |||||| | ||| ||||||||||  ||||||||||    
T  11091545 gaattgagtttctagtcttaaaaagagtggataatacattaggttgatgaataattagtgttataatgataggg 11091472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 401
Target Start/End: Original strand, 15865053 - 15865124
Alignment:
Q  330 agaaaccctagctgcgacggaatcaagccaaagctagaattttc-gaaggaatcgaggtaagggggagaatct 401  Q
    ||||||||||| ||| |||| ||||| |||| ||||||| |||| |||| |||||||||||||||||||||||    
T  15865053 agaaaccctagttgcaacgggatcaaaccaa-gctagaaatttcagaagaaatcgaggtaagggggagaatct 15865124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 257 - 299
Target Start/End: Original strand, 15864976 - 15865018
Alignment:
Q  257 aatagaaacattaggagttagaagggtcacccttgttgaacgt 299  Q
    |||||||||||||||||||||||| |||||  |||||||||||    
T  15864976 aatagaaacattaggagttagaagagtcacttttgttgaacgt 15865018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 13474765 - 13474817
Alignment:
Q  4 ttaatattattattgatgctgctttagcttgattgttattttgttgttaagaa 56  Q
    ||||||||||||||||||||||||  |||||| | ||||||| ||||| ||||    
T  13474765 ttaatattattattgatgctgcttgtgcttgagtattattttattgttgagaa 13474817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 330 - 393
Target Start/End: Complemental strand, 48379071 - 48379008
Alignment:
Q  330 agaaaccctagctgcgacggaatcaagccaaagctagaattttc-gaaggaatcgaggtaagggg 393  Q
    ||||||||||| |||||||| |||||||| ||||| ||| |||| |||| |||||||||||||||    
T  48379071 agaaaccctagttgcgacgggatcaagcc-aagctggaaatttcagaagaaatcgaggtaagggg 48379008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 132 - 258
Target Start/End: Original strand, 17958927 - 17959053
Alignment:
Q  132 tcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaatagaagagcagacaattataacaagtgattgacccaat 231  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||  |||||||||| | ||| ||| | |||||||| |||||||||||||     
T  17958927 tcggaggtgtataatataagttttaaataagtgggggaggggaggagtaaaagtatagtgaataaaggagaagaaagttataacatgtgattgacccaag 17959026  T
Q  232 tataaatagaaacattaggagttagaa 258  Q
    |||||||||||||||||||||||||||    
T  17959027 tataaatagaaacattaggagttagaa 17959053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 131 - 258
Target Start/End: Original strand, 14057445 - 14057572
Alignment:
Q  131 gtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaatagaagagcagacaattataacaagtgattgacccaa 230  Q
    |||| ||||||||||||||||||| ||||||||||||||||||| ||||||||  |||||||||| | ||| ||| | |||||||| |||||||||||||    
T  14057445 gtcgaaggtgtagaatataagttttaaataagtgggggaggggaggagtaaaagtatagtgaataaaggagaagaaatttataacatgtgattgacccaa 14057544  T
Q  231 ttataaatagaaacattaggagttagaa 258  Q
      ||||||||||||||||||||||||||    
T  14057545 gcataaatagaaacattaggagttagaa 14057572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 16932729 - 16932852
Alignment:
Q  131 gtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaatagaagagcagacaattataacaagtgattgacccaa 230  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||  |||||||||| | ||| | | | |||||||| |||||||||||||    
T  16932729 gtcggaggtgtagaatataagttttaaataagtgggggaggggaagagtaaaagtatagtgaataaaggagaaaaaagttataacatgtgattgacccaa 16932828  T
Q  231 ttataaatagaaacattaggagtt 254  Q
     |||||||||||||||||||||||    
T  16932829 gtataaatagaaacattaggagtt 16932852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 527 - 614
Target Start/End: Complemental strand, 22161699 - 22161612
Alignment:
Q  527 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  22161699 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatcaggtaggttaatgaagaattagtgtttgaatgataggg 22161612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 531 - 614
Target Start/End: Complemental strand, 10302694 - 10302611
Alignment:
Q  531 tttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10302694 tttaagtttttgaattgagttttagtctttaaaagagtggataatctggtaggttaacgaagaattagtgtttgaatgataggg 10302611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 527 - 614
Target Start/End: Complemental strand, 21999504 - 21999417
Alignment:
Q  527 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||| ||||    
T  21999504 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatcaggtaggttaatgaagaattagtgtttgaatgacaggg 21999417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 527 - 613
Target Start/End: Complemental strand, 10341024 - 10340938
Alignment:
Q  527 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgatagg 613  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  10341024 ctagtttaagtttttgaattgagttttagtctttaaaagagtggataatccggtaggttaacgaagaattagtgtttgaatgatagg 10340938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 527 - 614
Target Start/End: Complemental strand, 21977073 - 21976986
Alignment:
Q  527 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||| ||||||||||||||||||||| ||||    
T  21977073 ctagtttaggtttttgaattgagttttagtctttaaaagagtggataatcaggtaggttaatgaagaattagtgtttgaatgacaggg 21976986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 531 - 613
Target Start/End: Original strand, 27868423 - 27868505
Alignment:
Q  531 tttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgatagg 613  Q
    |||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||  |||||||||||||||    
T  27868423 tttaggttttcgaattgagttttagttttaaaaagagtggataatctggtaggttaacgaagaattgatgtttgaatgatagg 27868505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 531 - 614
Target Start/End: Complemental strand, 19186747 - 19186664
Alignment:
Q  531 tttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||| |||||||||||||||||||||||| |||||||||| ||||  ||||||||||| |||||||||||||||||||||||||    
T  19186747 tttaagtttttgaattgagttttagtcttgaaaagagtgggtaatcaggtaggttaacaaagaattagtgtttgaatgataggg 19186664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 54 - 258
Target Start/End: Complemental strand, 16928963 - 16928759
Alignment:
Q  54 gaatattgatgaggattgataagtagtacgagaatttattttaaataaagagaggcatcaaaacaaaataaaatagtgtcggaggtgtagaatataagtt 153  Q
    |||||||||||| |||| | |||||||| |||||||||  | |||| ||| |||  |||||||  |||| | |||| ||||  |||||||||||||||||    
T  16928963 gaatattgatgatgatttagaagtagtatgagaatttaaataaaatgaagggagaaatcaaaattaaatgatatagagtcgagggtgtagaatataagtt 16928864  T
Q  154 tcaaataagtgggggaggggatgagtaaaataatagtgaatagaagagcagacaattataacaagtgattgacccaattataaatagaaacattaggagt 253  Q
    | | ||||||||||||||||| |||||||| |||| ||| ||||  |  ||| |||  ||||||||||  ||||| | ||||||||||||  |||||| |    
T  16928863 ttatataagtgggggaggggaggagtaaaagaataatgagtagagaaaaagagaatcttaacaagtgaccgaccctaatataaatagaaaggttaggaat 16928764  T
Q  254 tagaa 258  Q
    |||||    
T  16928763 tagaa 16928759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 83 - 258
Target Start/End: Original strand, 14479222 - 14479397
Alignment:
Q  83 gagaatttattttaaataaagagaggcatcaaaacaaaataaaatagtgtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaa 182  Q
    ||||||||| ||| ||| ||| ||||  |||||| |||||||  ||| ||||| |||||||||||||||||| ||||||| ||||||||||| |||||||    
T  14479222 gagaatttaattttaatgaagggaggagtcaaaataaaataacgtagagtcgggggtgtagaatataagttttaaataagcgggggaggggaagagtaaa 14479321  T
Q  183 ataatagtgaatagaagagcagacaattataacaagtgattgacccaattataaatagaaacattaggagttagaa 258  Q
    | |||||||| |||| | | ||| |||  || |||||| | | ||| | ||||||||||||  ||| |||||||||    
T  14479322 agaatagtgagtagaggggaagagaatcttagcaagtggtcggccctaatataaatagaaaggttaagagttagaa 14479397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 380 - 444
Target Start/End: Complemental strand, 10302838 - 10302774
Alignment:
Q  380 atcgaggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtctt 444  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  10302838 atcgaagtacgggggagaatctttgcactttagggtatcttaatctatgatgggagggttgtctt 10302774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 381 - 430
Target Start/End: Complemental strand, 19186900 - 19186851
Alignment:
Q  381 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatgat 430  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  19186900 tcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgat 19186851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 380 - 428
Target Start/End: Complemental strand, 10341175 - 10341127
Alignment:
Q  380 atcgaggtaagggggagaatctttgcactttagggtatcttaatctatg 428  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  10341175 atcgaagtaagggggagaatatttgcactttagggtatcttaatctatg 10341127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 21977220 - 21977160
Alignment:
Q  384 aggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtctt 444  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||   |||||||||||    
T  21977220 aggtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtctt 21977160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 21999651 - 21999591
Alignment:
Q  384 aggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtctt 444  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||   |||||||||||    
T  21999651 aggtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtctt 21999591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 22161846 - 22161786
Alignment:
Q  384 aggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtctt 444  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||   |||||||||||    
T  22161846 aggtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtctt 22161786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 527 - 614
Target Start/End: Original strand, 52988998 - 52989085
Alignment:
Q  527 ctagtttaggtttttgaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||||||||  ||||||| | ||| ||||||||||  ||||||||||    
T  52988998 ctagtttaggtttc-gaattgagtttctagtcttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgataggg 52989085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 527 - 614
Target Start/End: Original strand, 16357977 - 16358055
Alignment:
Q  527 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    ||||||||||||||||||||||||||||||         ||||||||||  ||||||||| |||||||||||||||| ||||||||||    
T  16357977 ctagtttaggtttttgaattgagttttagt---------agtggataatcaggtaggttagcgaagaattagtgtttcaatgataggg 16358055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 381 - 430
Target Start/End: Original strand, 16357816 - 16357864
Alignment:
Q  381 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatgat 430  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  16357816 tcgaggtaagggg-agaatctttgcactttagggtatcttaatttatgat 16357864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 528 - 613
Target Start/End: Complemental strand, 21028748 - 21028662
Alignment:
Q  528 tagtttaggtttttgaattgagt-tttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgatagg 613  Q
    ||||||||| ||||||||||||| | ||| |||||||| |||  |||||  |||||||||| | | |||||||||| ||||||||||    
T  21028748 tagtttagggttttgaattgagtctatagccttaaaaatagtatataatcaggtaggttaatggaaaattagtgttggaatgatagg 21028662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 430
Target Start/End: Complemental strand, 16928668 - 16928619
Alignment:
Q  381 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatgat 430  Q
    |||||||||||| |||||| ||| |||||||  |||||||||||||||||    
T  16928668 tcgaggtaagggagagaatattttcactttaaagtatcttaatctatgat 16928619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 367 - 403
Target Start/End: Original strand, 14479486 - 14479522
Alignment:
Q  367 aattttcgaaggaatcgaggtaagggggagaatcttt 403  Q
    |||| |||||||| |||||||||||||||||||||||    
T  14479486 aattctcgaaggattcgaggtaagggggagaatcttt 14479522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 330 - 401
Target Start/End: Original strand, 17959107 - 17959178
Alignment:
Q  330 agaaaccctagctgcgacggaatcaagccaaagctagaa-ttttcgaaggaatcgaggtaagggggagaatct 401  Q
    ||||||||||| |||||||| |||||| ||| ||| ||| |||| |||| |||| ||||||||||||||||||    
T  17959107 agaaaccctagttgcgacgggatcaagtcaa-gctggaaattttagaagaaatcaaggtaagggggagaatct 17959178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 134 - 258
Target Start/End: Original strand, 51624630 - 51624754
Alignment:
Q  134 ggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaatagaagagcagacaattataacaagtgattgacccaatta 233  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||  |||||||||| | ||| ||| | |||||||| ||||||||||||| ||    
T  51624630 ggaggtgtagaatataagttttaaataagtgggggaggggaggagtaaaagtatagtgaataaaggagaagaaagttataacatgtgattgacccaagta 51624729  T
Q  234 taaatagaaacattaggagttagaa 258  Q
    |||||| ||||||||||||||||||    
T  51624730 taaatataaacattaggagttagaa 51624754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 55 - 258
Target Start/End: Complemental strand, 10390369 - 10390166
Alignment:
Q  55 aatattgatgaggattgataagtagtacgagaatttattttaaataaagagaggcatcaaaacaaaataaaatagtgtcggaggtgtagaatataagttt 154  Q
    ||||||||||| |||||| |||||||| ||||| |||  | |||||||| ||||  |||||| ||||||| |||| ||||| ||||||||||||||||||    
T  10390369 aatattgatgatgattgagaagtagtatgagaaattaaataaaataaagggaggagtcaaaataaaataacatagagtcgggggtgtagaatataagttt 10390270  T
Q  155 caaataagtgggggaggggatgagtaaaataatagtgaatagaagagcagacaattataacaagtgattgacccaattataaatagaaacattaggagtt 254  Q
     |||||||| |||||||||| |||||||| |||||||| |||| ||||||| |||  ||||||||||  | ||  | |||||||| |||  |||||||||    
T  10390269 taaataagttggggaggggaggagtaaaagaatagtgagtagaggagcagagaatcttaacaagtgaccggccttaatataaatacaaaggttaggagtt 10390170  T
Q  255 agaa 258  Q
    ||||    
T  10390169 agaa 10390166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 550 - 614
Target Start/End: Complemental strand, 15544227 - 15544163
Alignment:
Q  550 ttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||| ||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||    
T  15544227 ttttagccttaaaaagagtggataatctggtaggttaacaaagaattagtgtttgattgataggg 15544163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 527 - 614
Target Start/End: Complemental strand, 17451362 - 17451272
Alignment:
Q  527 ctagtttaggtttttgaattgagtttt---agtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    ||||||||||||||| | |||||||||   || |||||||| |||||||||| |||||||||||| |||| ||||||||||||||||||||    
T  17451362 ctagtttaggtttttaagttgagtttttttagccttaaaaatagtggataatctggtaggttaactaagagttagtgtttgaatgataggg 17451272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 380 - 428
Target Start/End: Complemental strand, 21496681 - 21496633
Alignment:
Q  380 atcgaggtaagggggagaatctttgcactttagggtatcttaatctatg 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21496681 atcgaggtaagggggagaatctttgcactttagggtatcttaatctatg 21496633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 527 - 613
Target Start/End: Original strand, 21995804 - 21995890
Alignment:
Q  527 ctagtttaggtttttgaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgatagg 613  Q
    |||||||||||||  ||||||||||| |||||||||||||||||||| |||  ||||||| | ||| ||||||||||  |||||||||    
T  21995804 ctagtttaggtttc-gaattgagtttctagtcttaaaaagagtggatcatacagtaggttgatgaataattagtgttataatgatagg 21995890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 24852447 - 24852494
Alignment:
Q  125 aatagtgtcggaggtgtagaatataagtttcaaataagtgggggaggg 172  Q
    ||||| ||| |||||||||||||||||||| |||||||||||||||||    
T  24852447 aatagagtcagaggtgtagaatataagttttaaataagtgggggaggg 24852494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 381 - 430
Target Start/End: Complemental strand, 17451523 - 17451474
Alignment:
Q  381 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatgat 430  Q
    |||||| |||||  ||||||||||||||||||||||||||||| ||||||    
T  17451523 tcgagggaagggatagaatctttgcactttagggtatcttaatatatgat 17451474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 415
Target Start/End: Complemental strand, 15545361 - 15545327
Alignment:
Q  381 tcgaggtaagggggagaatctttgcactttagggt 415  Q
    ||||||||||||| |||||||||||||||||||||    
T  15545361 tcgaggtaaggggtagaatctttgcactttagggt 15545327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 43154161 - 43154215
Alignment:
Q  137 ggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtg 191  Q
    ||||||||| |||||||| |||||||||||||||||   |||||||| |||||||    
T  43154161 ggtgtagaaaataagttttaaataagtgggggagggagggagtaaaagaatagtg 43154215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 550 - 587
Target Start/End: Complemental strand, 21496487 - 21496450
Alignment:
Q  550 ttttagtcttaaaaagagtggataatatggtaggttaa 587  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  21496487 ttttagtcttaaaaagagtggataatccggtaggttaa 21496450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 43154372 - 43154421
Alignment:
Q  368 attttcgaaggaatcgaggtaagggggagaatctttgcactttagggtat 417  Q
    ||||| |||||| ||||||||||||||||||||| |  ||||||||||||    
T  43154372 atttttgaaggattcgaggtaagggggagaatctcttaactttagggtat 43154421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 15545590 - 15545554
Alignment:
Q  136 aggtgtagaatataagtttcaaataagtgggggaggg 172  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  15545590 aggtgtagagtataagttttaaataagtgggggaggg 15545554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 614
Target Start/End: Complemental strand, 31344127 - 31344039
Alignment:
Q  527 ctagtttaggtttttgaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||||| ||||||||| ||| | ||| |||||||| | | ||||||  | |||||||| | |||||||||||| |||||||||||    
T  31344127 ctagtttagggttttgaatttagtctatagccttaaaaatattagataatcggataggttaatggagaattagtgttggaatgataggg 31344039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 131 - 258
Target Start/End: Complemental strand, 133040 - 132913
Alignment:
Q  131 gtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaatagaagagcagacaattataacaagtgattgacccaa 230  Q
    |||||||||||||||||||||||| |||||||||| |||||||| ||||||||  |||||||||| | ||| ||| | |||||||| |||||||||||||    
T  133040 gtcggaggtgtagaatataagttttaaataagtggcggaggggaggagtaaaagtatagtgaataaaggagaagaaagttataacatgtgattgacccaa 132941  T
Q  231 ttataaatagaaacattaggagttagaa 258  Q
     |||||||||||||||||| ||||||||    
T  132940 gtataaatagaaacattagaagttagaa 132913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 401
Target Start/End: Complemental strand, 132861 - 132790
Alignment:
Q  330 agaaaccctagctgcgacggaatcaagccaaagctagaattttc-gaaggaatcgaggtaagggggagaatct 401  Q
    ||||||||||| || ||||| |||||||||| ||| ||| |||| |||| |||||||||||||||||||||||    
T  132861 agaaaccctagttgtgacgggatcaagccaa-gctggaaatttcagaagaaatcgaggtaagggggagaatct 132790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 527 - 613
Target Start/End: Original strand, 11993 - 12079
Alignment:
Q  527 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgatagg 613  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  11993 ctagtttaggtttttgaattgagttttagttttaaaaagagtggataatctggtaggttaacgaagaattagtgtttgaattatagg 12079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 11702 - 11832
Alignment:
Q  2 ggttaatattattattgatgctgctttagcttgattgttattttgttgtta-------agaatattgatgaggattgataagtagtacgagaatttattt 94  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||       ||||||||||||||||||||| ||||||| |||||||||  |    
T  11702 ggttaatattattattgatgctgctttagcttgaatgttattttgttgttaagaagatagaatattgatgaggattgatcagtagtatgagaatttaaat 11801  T
Q  95 taaataaagagaggcatcaaaacaaaataaa 125  Q
    ||||||||| |||| |||||||||| |||||    
T  11802 taaataaagtgaggaatcaaaacaagataaa 11832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 441
Target Start/End: Original strand, 11838 - 11890
Alignment:
Q  389 agggggagaatctttgcactttagggtatcttaatctatgatatgagggttgt 441  Q
    ||||||||||||||||||||||||||| || |||| ||||||| |||||||||    
T  11838 agggggagaatctttgcactttagggtgtcgtaatttatgataggagggttgt 11890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 132 - 258
Target Start/End: Complemental strand, 31506 - 31380
Alignment:
Q  132 tcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaatagaagagcagacaattataacaagtgattgacccaat 231  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||  ||| |||||| | ||| ||| | |||||||| |||||||||||||     
T  31506 tcggaggtgtagaatataagttttaaataagtgggggaggggaggagtaaaagtatattgaataaaggagaagaaatttataacatgtgattgacccaag 31407  T
Q  232 tataaatagaaacattaggagttagaa 258  Q
    |||||||||||||||||| ||||||||    
T  31406 tataaatagaaacattagaagttagaa 31380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 401
Target Start/End: Complemental strand, 31327 - 31256
Alignment:
Q  330 agaaaccctagctgcgacggaatcaagccaaagctagaattttc-gaaggaatcgaggtaagggggagaatct 401  Q
    ||||||||||| | |||||| |||||||||| ||| ||| |||| |||| |||||||||||||||||||||||    
T  31327 agaaaccctagttacgacgggatcaagccaa-gctggaaatttcagaagaaatcgaggtaagggggagaatct 31256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 131 - 258
Target Start/End: Original strand, 25846 - 25973
Alignment:
Q  131 gtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaatagaagagcagacaattataacaagtgattgacccaa 230  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||  || |||| || | ||| ||| | |||||||| || ||||||||||    
T  25846 gtcggaggtgtagaatataagttttaaataagtgggggaggggaggagtaaaagtatggtgagtaaaggagaagaaagttataacatgttattgacccaa 25945  T
Q  231 ttataaatagaaacattaggagttagaa 258  Q
     |||||||||||||||||| ||||||||    
T  25946 gtataaatagaaacattagaagttagaa 25973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 401
Target Start/End: Original strand, 26014 - 26085
Alignment:
Q  330 agaaaccctagctgcgacggaatcaagccaaagctagaattttc-gaaggaatcgaggtaagggggagaatct 401  Q
    ||||||||||| |||||||| |||||||||| ||| ||| |||| |||| |||||||||||||||||||||||    
T  26014 agaaaccctagttgcgacgggatcaagccaa-gctggaaatttcagaagaaatcgaggtaagggggagaatct 26085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 527 - 614
Target Start/End: Complemental strand, 16100 - 16013
Alignment:
Q  527 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||  ||||| |||| ||||||||||||||||||| ||||||    
T  16100 ctagtttaagtttttgaattgagttttagtcttaaaaagagtggataatcaggtagtttaatgaagaattagtgtttgaatcataggg 16013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 381 - 444
Target Start/End: Complemental strand, 16263 - 16200
Alignment:
Q  381 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtctt 444  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||  |||||| |||||    
T  16263 tcgaggtaagggggagaatctttgtactttagggtatcttaatttatgatgggagggtcgtctt 16200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 527 - 614
Target Start/End: Complemental strand, 11924 - 11836
Alignment:
Q  527 ctagtttaggtttttgaattgagtttt-agtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||   ||||||| ||||||||||||||||||||||||||||    
T  11924 ctagtttagatttttgaattgagtttttagtcttaaaaagagtggataatcaagtaggttcacgaagaattagtgtttgaatgataggg 11836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 12060 - 12011
Alignment:
Q  395 agaatctttgcactttagggtatcttaatctatgatatgagggttgtctt 444  Q
    ||||| ||||||||||||||||||||||| ||||||  ||||||||||||    
T  12060 agaatatttgcactttagggtatcttaatttatgatgggagggttgtctt 12011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 131 - 258
Target Start/End: Complemental strand, 16854 - 16727
Alignment:
Q  131 gtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaatagaagagcagacaattataacaagtgattgacccaa 230  Q
    |||| ||||||||||||||||||| |||||||||| ||| |||| ||||||||  |||||||||| | ||| ||| | |||||||| |||||||||| |     
T  16854 gtcgaaggtgtagaatataagttttaaataagtggaggatgggaggagtaaaagtatagtgaataaaggagaagaaagttataacatgtgattgaccaac 16755  T
Q  231 ttataaatagaaacattaggagttagaa 258  Q
     |||||||||||||||||| ||||||||    
T  16754 gtataaatagaaacattagaagttagaa 16727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 329 - 401
Target Start/End: Complemental strand, 16676 - 16604
Alignment:
Q  329 gagaaaccctagctgcgacggaatcaagccaaagctagaattttc-gaaggaatcgaggtaagggggagaatct 401  Q
    |||||||||||| |||||||| |||||||||| ||| ||| |||| |||| |||||||||||||||||||||||    
T  16676 gagaaaccctagttgcgacgggatcaagccaa-gctggaaatttcagaagaaatcgaggtaagggggagaatct 16604  T

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Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 111 - 261
Target Start/End: Original strand, 24829661 - 24829811
Alignment:
Q  111 tcaaaacaaaataaaatagtgtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaatagaagagcagacaatt 210  Q
    |||||| ||||||| |||| ||||| |||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| |||| ||  ||| |||     
T  24829661 tcaaaataaaataacatagagtcgggggtgtagaatataagttttaaataagtgggggaggggaagagtaaaagaatagtgagtagaggataagagaatc 24829760  T
Q  211 ataacaagtgattgacccaattataaatagaaacattaggagttagaatag 261  Q
     ||||||||||  | ||| | ||||||||||||  ||| || |||||||||    
T  24829761 ttaacaagtgaccggccctaatataaatagaaaggttaagatttagaatag 24829811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 527 - 614
Target Start/End: Complemental strand, 23909135 - 23909048
Alignment:
Q  527 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||| |||||||||||||||||||||||| |||| ||||||||||  ||||||||||| ||||||| ||||||| |||||||||    
T  23909135 ctagtttaagtttttgaattgagttttagtctttaaaaaagtggataattcggtaggttaacaaagaatttgtgtttgcatgataggg 23909048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 527 - 612
Target Start/End: Complemental strand, 13938917 - 13938830
Alignment:
Q  527 ctagtttaggtttttgaattgagtttt--agtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgatag 612  Q
    ||||||||||| |||||||||||||||  |  |||||||||| ||||||||  ||||||||||| |||||||||||||||||| ||||    
T  13938917 ctagtttaggtatttgaattgagttttttatccttaaaaagaatggataatccggtaggttaacaaagaattagtgtttgaattatag 13938830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 527 - 611
Target Start/End: Complemental strand, 14137906 - 14137821
Alignment:
Q  527 ctagtttaggtttttgaattgagtttt-agtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgata 611  Q
    ||||||||||||||| || |||||||| || | |||||||||| |||||| ||||||||||| ||||||||| |||||| ||||||    
T  14137906 ctagtttaggtttttaaaatgagtttttagccgtaaaaagagtagataatttggtaggttaatgaagaattactgtttggatgata 14137821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 386 - 438
Target Start/End: Original strand, 25756303 - 25756355
Alignment:
Q  386 gtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggt 438  Q
    ||||| |||||||||||||||||||||||||||||||||||||| | ||||||    
T  25756303 gtaagagggagaatctttgcactttagggtatcttaatctatgacaggagggt 25756355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 366 - 444
Target Start/End: Complemental strand, 14138083 - 14138005
Alignment:
Q  366 gaattttcgaaggaatcgaggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtctt 444  Q
    |||||||||||||| ||||||||||||||| ||||| |  |||||||||||||||| | | ||||  ||||||||||||    
T  14138083 gaattttcgaaggattcgaggtaagggggacaatctctttactttagggtatcttattatttgatgggagggttgtctt 14138005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 386 - 444
Target Start/End: Complemental strand, 25791941 - 25791883
Alignment:
Q  386 gtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtctt 444  Q
    ||||| ||||||||||||| |||||||||||||||||||||||| | ||||||| ||||    
T  25791941 gtaagagggagaatctttgaactttagggtatcttaatctatgacaggagggttttctt 25791883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 383 - 445
Target Start/End: Complemental strand, 32948927 - 32948866
Alignment:
Q  383 gaggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtcttt 445  Q
    |||||||||||||||||||||||||||||| |||||| ||||| ||||  |||||||||||||    
T  32948927 gaggtaagggggagaatctttgcactttagagtatctaaatct-tgatgggagggttgtcttt 32948866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 13939293 - 13939172
Alignment:
Q  137 ggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaatagaagagcagacaattataacaagtgattgacccaattataa 236  Q
    |||||| |||||||||||  ||||||||||||| |||| | |||||| |||||||| | || ||| | | |||  ||||||||||  ||||||| |||||    
T  13939293 ggtgtataatataagttttcaataagtgggggaagggaggggtaaaagaatagtgagtcgaggagaatagaatattaacaagtgaccgacccaaatataa 13939194  T
Q  237 atagaaacattaggagttagaa 258  Q
    ||||||   |||||||||||||    
T  13939193 atagaatggttaggagttagaa 13939172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 112 - 237
Target Start/End: Complemental strand, 14138315 - 14138192
Alignment:
Q  112 caaaacaaaataaaatagtgtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaatagaagagcagacaatta 211  Q
    ||||| ||||||| |||| ||| | |||||||||||||||||| |||||||| ||||||||   |||||||| ||||| || |||| ||| ||| |||      
T  14138315 caaaataaaataatatagagtcag-ggtgtagaatataagttttaaataagt-ggggagggttggagtaaaagaatagcgagtagaggagaagataatct 14138218  T
Q  212 taacaagtgattgacccaattataaa 237  Q
    |||||||||||||||| || ||||||    
T  14138217 taacaagtgattgacctaaatataaa 14138192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 25581329 - 25581374
Alignment:
Q  384 aggtaagggggagaatctttgcactttagggtatcttaatctatgat 430  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||    
T  25581329 aggtaagggggagaatctttccactttagggtatctt-atctatgat 25581374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 381 - 430
Target Start/End: Complemental strand, 13939078 - 13939029
Alignment:
Q  381 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatgat 430  Q
    |||||||||| || |||||||||||||||||| |||||||||| ||||||    
T  13939078 tcgaggtaagaggaagaatctttgcactttagtgtatcttaatatatgat 13939029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 613
Target Start/End: Complemental strand, 25791782 - 25791694
Alignment:
Q  527 ctagtttaggtttttg-aattgagtttt-agtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgatagg 613  Q
    ||||||||| |||||  ||||||||||| |||||||||||||||| |||||   ||||||||||  |  ||||||||||||||||||||    
T  25791782 ctagtttagttttttctaattgagtttttagtcttaaaaagagtgaataatccagtaggttaacctatgattagtgtttgaatgatagg 25791694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 23949805 - 23949861
Alignment:
Q  135 gaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtg 191  Q
    |||||||||||||||||||| ||| |||| |||||| |  ||||||||| |||||||    
T  23949805 gaggtgtagaatataagttttaaacaagtaggggagtgattgagtaaaagaatagtg 23949861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 24565025 - 24564977
Alignment:
Q  381 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatga 429  Q
    ||||||||| ||| | ||||||||||||||||||| ||||||| |||||    
T  24565025 tcgaggtaatgggaaaaatctttgcactttagggtctcttaatatatga 24564977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 602
Target Start/End: Original strand, 25581498 - 25581565
Alignment:
Q  537 tttttgaattgagtttt--agtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtt 602  Q
    |||||||||||||||||  |  | |||||||||||||||||   |||||||||| |||||||||||||    
T  25581498 tttttgaattgagttttttaaccataaaaagagtggataatccagtaggttaacaaagaattagtgtt 25581565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 380 - 445
Target Start/End: Complemental strand, 14682 - 14617
Alignment:
Q  380 atcgaggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtcttt 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  14682 atcgaggtaagggggagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttt 14617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 384 - 445
Target Start/End: Original strand, 737 - 797
Alignment:
Q  384 aggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtcttt 445  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||    
T  737 aggtaagggggagaa-ctttgcactttagggtatcttaatctatgattggagggttgtcttt 797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 527 - 614
Target Start/End: Complemental strand, 11801 - 11714
Alignment:
Q  527 ctagtttaggtttttgaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||  ||||||| | ||| ||||||||||  ||||||||||    
T  11801 ctagtttaggtttt-gaattgagtttctagtcttaaaaagagtggataatacagtaggttgatgaaaaattagtgttataatgataggg 11714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 527 - 614
Target Start/End: Complemental strand, 1351 - 1264
Alignment:
Q  527 ctagtttaggtttttgaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||||||||  ||||||| | ||| ||||||||||  ||||||||||    
T  1351 ctagtttaggtttc-gaattgagtttctagtcttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgataggg 1264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 429
Target Start/End: Complemental strand, 15098 - 15055
Alignment:
Q  386 gtaagggggagaatctttgcactttagggtatcttaatctatga 429  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  15098 gtaagggggagaatctttgcactatagggtatcttaatctatga 15055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 527 - 613
Target Start/End: Complemental strand, 14946 - 14860
Alignment:
Q  527 ctagtttaggtttttgaattgagttttagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgatagg 613  Q
    ||||||| | ||||| |||||| |||||||||| ||||||||| | |||  ||||||||||| ||  |||||||||| |||||||||    
T  14946 ctagttttgtttttttaattgaattttagtcttgaaaagagtgaacaattcggtaggttaacaaatgattagtgttttaatgatagg 14860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 527 - 613
Target Start/End: Complemental strand, 1850 - 1764
Alignment:
Q  527 ctagtttaggtttttgaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgatagg 613  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||||||||  ||||||| | ||| ||||||||||  |||||||||    
T  1850 ctagtttaggtttc-gaattgagtttctagtcttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgatagg 1764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 528 - 614
Target Start/End: Complemental strand, 68208 - 68122
Alignment:
Q  528 tagtttaggtttttgaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    ||||||||||||  ||||||||||| ||||||||||||||||||||||||  ||||||| | ||| ||||||||||  ||||||||||    
T  68208 tagtttaggtttc-gaattgagtttctagtcttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgataggg 68122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 516 - 574
Alignment:
Q  386 gtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtctt 444  Q
    ||||||||||||||||||||| | ||| |||||||||||||||||  ||||||||||||    
T  516 gtaagggggagaatctttgcaatgtagagtatcttaatctatgatgagagggttgtctt 574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 541 - 614
Target Start/End: Complemental strand, 5199 - 5125
Alignment:
Q  541 tgaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||||||| ||||||||||||||||||||||||  ||||||| | ||| ||||||||||  ||||||||||    
T  5199 tgaattgagtttctagtcttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgataggg 5125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 541 - 614
Target Start/End: Complemental strand, 12219 - 12145
Alignment:
Q  541 tgaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||||||| ||||||||||||||||||||||||  ||||||| | ||| ||||||||||  ||||||||||    
T  12219 tgaattgagtttctagtcttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgataggg 12145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 603
Target Start/End: Original strand, 11659 - 11738
Alignment:
Q  527 ctagtttaggtttttgaattgagtttt---agtcttaaaaagagtggataatatggtaggttaacgaagaattagtgttt 603  Q
    |||||||| ||||||||||||||||||   || ||||||| |||||||||||  |||| |||||| ||||||||||||||    
T  11659 ctagtttatgtttttgaattgagtttttttagccttaaaatgagtggataatccggtaagttaacaaagaattagtgttt 11738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 429
Target Start/End: Original strand, 11515 - 11553
Alignment:
Q  391 ggggagaatctttgcactttagggtatcttaatctatga 429  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  11515 ggggagaatctttgcactttagggtatcttaatatatga 11553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 614
Target Start/End: Complemental strand, 13547 - 13462
Alignment:
Q  529 agtttaggtttttgaattgagttt-tagtcttaaaaagagtggataatatggtaggttaacgaagaattagtgtttgaatgataggg 614  Q
    |||||||||||  ||||||| ||| ||||||||||||||||||||||||  ||||||| | ||| ||||||||||  ||||||||||    
T  13547 agtttaggtttc-gaattgaatttctagtcttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgataggg 13462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 430
Target Start/End: Original strand, 35443 - 35520
Alignment:
Q  352 tcaagccaaagctagaattttcgaaggaatcgaggtaagggggagaatctttgcactttagggtatcttaatctatgat 430  Q
    |||||||||| | ||| ||||| ||||| ||||||||||||||||| || |  ||||||||||||| ||||||||||||    
T  35443 tcaagccaaaaccagatttttcaaaggattcgaggtaagggggagattcctaccactttagggtat-ttaatctatgat 35520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 253
Target Start/End: Complemental strand, 54631 - 54490
Alignment:
Q  111 tcaaaacaaaataaaatagtgtcggaggtgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaatagaagagcagacaatt 210  Q
    |||||| ||||||| |||| ||||| |||||||||||||  ||| || ||||| ||| |||||| |||||||| |||||||| |||||| | |||  ||     
T  54631 tcaaaataaaataacatagagtcgg-ggtgtagaatatatattttaattaagttgggcaggggaagagtaaaagaatagtgagtagaagggaagagtatc 54533  T
Q  211 ataacaagtgattgacccaattataaatagaaacattaggagt 253  Q
     ||||||||||   |||| | ||||||||||||  ||||||||    
T  54532 ttaacaagtgaccaaccctaatataaatagaaaggttaggagt 54490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 444
Target Start/End: Complemental strand, 143216 - 143158
Alignment:
Q  386 gtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtctt 444  Q
    ||||||||| |||||||| ||||||| ||||||||||||||||||  || |||||||||    
T  143216 gtaagggggtgaatcttttcactttatggtatcttaatctatgatgggaaggttgtctt 143158  T

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Target: scaffold0670 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0670
Description:

Target: scaffold0670; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 431
Target Start/End: Complemental strand, 6581 - 6503
Alignment:
Q  352 tcaagccaaagctagaattttcgaaggaatcgaggtaagggggagaatctttgcactttagggtatcttaatctatgata 431  Q
    |||||||||| | ||| ||||| ||||| ||||||||||||||||| || |  ||||||||||| | |||||||||||||    
T  6581 tcaagccaaaaccagatttttcaaaggattcgaggtaagggggagattcctaccactttagggtgt-ttaatctatgata 6503  T

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Target: scaffold0035 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 15389 - 15438
Alignment:
Q  369 ttttcgaaggaatcgaggtaagggggagaatctttgcactttagggtatc 418  Q
    ||||| ||||| ||||||||||||||||| || || ||||||||||||||    
T  15389 ttttcaaaggattcgaggtaagggggagattcctttcactttagggtatc 15438  T

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