View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17910_high_2 (Length: 351)

Name: NF17910_high_2
Description: NF17910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17910_high_2
NF17910_high_2
[»] chr6 (5 HSPs)
chr6 (9-344)||(31340561-31340896)
chr6 (302-343)||(4996877-4996918)
chr6 (302-343)||(4480479-4480520)
chr6 (299-340)||(7974793-7974834)
chr6 (302-343)||(8329640-8329681)
[»] chr3 (8 HSPs)
chr3 (17-156)||(45723849-45723987)
chr3 (302-343)||(24273962-24274003)
chr3 (302-341)||(24657416-24657455)
chr3 (297-340)||(46316562-46316605)
chr3 (302-343)||(10473996-10474037)
chr3 (302-343)||(27396859-27396900)
chr3 (299-343)||(24751755-24751799)
chr3 (302-338)||(32946439-32946475)
[»] chr8 (6 HSPs)
chr8 (297-343)||(39666977-39667023)
chr8 (302-350)||(16395378-16395426)
chr8 (297-343)||(25893851-25893897)
chr8 (297-343)||(41897824-41897870)
chr8 (302-343)||(18040141-18040182)
chr8 (302-343)||(43820873-43820914)
[»] chr4 (4 HSPs)
chr4 (302-342)||(36752364-36752404)
chr4 (302-343)||(12694528-12694569)
chr4 (302-343)||(18813375-18813416)
chr4 (302-343)||(35318545-35318586)
[»] chr2 (4 HSPs)
chr2 (299-343)||(4014895-4014939)
chr2 (299-341)||(23458682-23458724)
chr2 (299-343)||(7975096-7975140)
chr2 (299-343)||(31516287-31516331)
[»] scaffold0595 (1 HSPs)
scaffold0595 (302-343)||(350-391)
[»] chr7 (4 HSPs)
chr7 (302-343)||(6327216-6327257)
chr7 (302-343)||(17895639-17895680)
chr7 (302-343)||(29151588-29151629)
chr7 (299-343)||(10061098-10061142)
[»] chr5 (3 HSPs)
chr5 (302-343)||(10154244-10154285)
chr5 (302-343)||(22620733-22620774)
chr5 (302-343)||(37067706-37067747)
[»] chr1 (7 HSPs)
chr1 (302-343)||(4126580-4126621)
chr1 (297-346)||(11797478-11797527)
chr1 (302-343)||(32880661-32880702)
chr1 (302-343)||(39522840-39522881)
chr1 (299-343)||(11786105-11786149)
chr1 (302-342)||(48731839-48731879)
chr1 (299-343)||(49500863-49500907)


Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 9 - 344
Target Start/End: Complemental strand, 31340896 - 31340561
Alignment:
Q  9 accacagaccaccaaaaaagcataattaataaacaagtgatctatgttctcattggcacaccacaattcgcaacgcaaccttggtcattatctgttaaaa 108  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||    
T  31340896 accacataccaccaaaaaagcacaattaataaacaagtgatctatgttctcattggcacaccacaatttgtaacgcaaccttagtcattatctgttaaaa 31340797  T
Q  109 cacacctttgaactagcttgtcctttgtagaaacccgattaaaaaacagatgtcaaacaaaaatcgattggataaaattaaaatgatatcatgattttgt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31340796 cacacctttgaactagcttgtcctttgtagaaacccgattaaaaaacagatgtcaaacaaaaatcgagtggataaaattaaaatgatatcatgattttgt 31340697  T
Q  209 tgaatcgaaaaagttattttatgaaattattttgac-aaatcatttgtgacaccaaacaaacattttattttgtatttnnnnnnnnnnnttcacaagtcc 307  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||           |||||||||||    
T  31340696 tgaatcgaaaaagttattttatgaaattattttgacaaaatcatttgtgacaccaaacaaacattttattttgtattt-aaaaaaaaaattcacaagtcc 31340598  T
Q  308 taactcaactgacaatatgctgaaattgttaggccga 344  Q
    |||||||||||||||||||| ||||||||||||||||    
T  31340597 taactcaactgacaatatgccgaaattgttaggccga 31340561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 4996877 - 4996918
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  4996877 aagtcctagctcaactgacaaaatgctgaaattgttaggccg 4996918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 4480479 - 4480520
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    ||||||||||||||||| ||| |||| |||||||||||||||    
T  4480479 aagtcctaactcaactggcaaaatgccgaaattgttaggccg 4480520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 7974834 - 7974793
Alignment:
Q  299 cacaagtcctaactcaactgacaatatgctgaaattgttagg 340  Q
    ||||||||||| |||||||||||| |||| ||||||||||||    
T  7974834 cacaagtcctacctcaactgacaaaatgccgaaattgttagg 7974793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 8329681 - 8329640
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    |||||||| |||||||| |||||||| |||||||||||||||    
T  8329681 aagtcctagctcaactggcaatatgccgaaattgttaggccg 8329640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 45723987 - 45723849
Alignment:
Q  17 ccaccaaaaaag-cataattaataaacaagtgatctatgttctcattggcacaccacaattcgcaacgcaaccttggtcattatctgttaaaacacacct 115  Q
    |||||||||||| || |||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||| |||| | |||||||| | |    
T  45723987 ccaccaaaaaaggcacaattaataaacaagtgatctttgttctcattggcac--cacaattcgcaacgcaaccttggtcaatatcagctaaaacacgctt 45723890  T
Q  116 ttgaactagcttgtcctttgtagaaacccgattaaaaaaca 156  Q
    ||||| || ||| ||||||||||  |||||||||| |||||    
T  45723889 ttgaagtaacttatcctttgtaggcacccgattaagaaaca 45723849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 24274003 - 24273962
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    ||||||||||||||||||||| |||| |||||||||||||||    
T  24274003 aagtcctaactcaactgacaaaatgccgaaattgttaggccg 24273962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 341
Target Start/End: Original strand, 24657416 - 24657455
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggc 341  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  24657416 aagtcctaactcaactgacaaaatgccgaaattgttaggc 24657455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 46316605 - 46316562
Alignment:
Q  297 ttcacaagtcctaactcaactgacaatatgctgaaattgttagg 340  Q
    ||||||||||||||||||||||| || |||| ||||||||||||    
T  46316605 ttcacaagtcctaactcaactgaaaaaatgccgaaattgttagg 46316562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 10474037 - 10473996
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    |||||||| |||||||| ||| ||||||||||||||||||||    
T  10474037 aagtcctagctcaactggcaaaatgctgaaattgttaggccg 10473996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 27396859 - 27396900
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    |||||||| |||||||||||| |||| |||||||||||||||    
T  27396859 aagtcctagctcaactgacaaaatgccgaaattgttaggccg 27396900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 24751755 - 24751799
Alignment:
Q  299 cacaagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    ||||||||||| |||||||| ||| |||| |||||||||||||||    
T  24751755 cacaagtcctagctcaactggcaaaatgccgaaattgttaggccg 24751799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 32946475 - 32946439
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgtta 338  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  32946475 aagtcctaactcaactgtcaaaatgctgaaattgtta 32946439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 343
Target Start/End: Complemental strand, 39667023 - 39666977
Alignment:
Q  297 ttcacaagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||||    
T  39667023 ttcagaagtcctaactcaactgacaaaatgccgaaattgttaggccg 39666977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 350
Target Start/End: Original strand, 16395378 - 16395426
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccgaatacta 350  Q
    |||||||||||||||||  || |||||||||||||||||||| ||||||    
T  16395378 aagtcctaactcaactggtaaaatgctgaaattgttaggccggatacta 16395426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 25893851 - 25893897
Alignment:
Q  297 ttcacaagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    |||| |||||||| |||||||| ||| ||||||||||||||||||||    
T  25893851 ttcagaagtcctagctcaactggcaaaatgctgaaattgttaggccg 25893897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 41897824 - 41897870
Alignment:
Q  297 ttcacaagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    |||| ||||||||||||||||||||| || | |||||||||||||||    
T  41897824 ttcagaagtcctaactcaactgacaaaataccgaaattgttaggccg 41897870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 18040141 - 18040182
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    |||||||| ||||||||| || ||||||||||||||||||||    
T  18040141 aagtcctagctcaactgataaaatgctgaaattgttaggccg 18040182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 43820873 - 43820914
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    ||||||||||||||||| ||| |||| |||||||||||||||    
T  43820873 aagtcctaactcaactggcaaaatgccgaaattgttaggccg 43820914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 36752364 - 36752404
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggcc 342  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  36752364 aagtcctaactcaactgacaaaatgccgaaattgttaggcc 36752404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 12694528 - 12694569
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    |||||||| |||||||||||| ||||||||| ||||||||||    
T  12694528 aagtcctagctcaactgacaaaatgctgaaactgttaggccg 12694569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 18813375 - 18813416
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    ||||||||||||||||| ||| |||| |||||||||||||||    
T  18813375 aagtcctaactcaactggcaaaatgccgaaattgttaggccg 18813416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 35318545 - 35318586
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    ||||||||||||||||| ||| |||| |||||||||||||||    
T  35318545 aagtcctaactcaactggcaaaatgccgaaattgttaggccg 35318586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 4014939 - 4014895
Alignment:
Q  299 cacaagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    ||||||||||| |||||||||||| |||| |||||||||||||||    
T  4014939 cacaagtcctagctcaactgacaaaatgccgaaattgttaggccg 4014895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 23458682 - 23458724
Alignment:
Q  299 cacaagtcctaactcaactgacaatatgctgaaattgttaggc 341  Q
    ||||||||||||||||||||  || ||||||||||||||||||    
T  23458682 cacaagtcctaactcaactggaaaaatgctgaaattgttaggc 23458724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 7975140 - 7975096
Alignment:
Q  299 cacaagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    ||||||||||| |||||||| ||| |||| |||||||||||||||    
T  7975140 cacaagtcctagctcaactggcaaaatgccgaaattgttaggccg 7975096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 31516331 - 31516287
Alignment:
Q  299 cacaagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    ||||||||||||||||||||  || |||| |||||||||||||||    
T  31516331 cacaagtcctaactcaactggaaaaatgccgaaattgttaggccg 31516287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 350 - 391
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    |||||||| |||||||| |||||||| |||||||||||||||    
T  350 aagtcctagctcaactggcaatatgccgaaattgttaggccg 391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 6327216 - 6327257
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    ||||||||||||||||||||| ||||  ||||||||||||||    
T  6327216 aagtcctaactcaactgacaaaatgcaaaaattgttaggccg 6327257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 17895639 - 17895680
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    |||||||| |||||||| ||| ||||||||||||||||||||    
T  17895639 aagtcctagctcaactggcaaaatgctgaaattgttaggccg 17895680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 29151588 - 29151629
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    |||||||| |||||||| ||| ||||||||||||||||||||    
T  29151588 aagtcctagctcaactggcaaaatgctgaaattgttaggccg 29151629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 10061142 - 10061098
Alignment:
Q  299 cacaagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    ||||||||||| |||||||| ||| |||| |||||||||||||||    
T  10061142 cacaagtcctagctcaactggcaaaatgccgaaattgttaggccg 10061098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 10154285 - 10154244
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    ||||||||||||||||||||| |||| |||||||| ||||||    
T  10154285 aagtcctaactcaactgacaaaatgccgaaattgtcaggccg 10154244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 22620774 - 22620733
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    |||||||| |||||||||||| |||| |||||||||||||||    
T  22620774 aagtcctagctcaactgacaaaatgccgaaattgttaggccg 22620733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 37067706 - 37067747
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    |||||||| |||||||||||| |||| |||||||||||||||    
T  37067706 aagtcctacctcaactgacaaaatgccgaaattgttaggccg 37067747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 4126580 - 4126621
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    |||||||| |||||||||||| |||| |||||||||||||||    
T  4126580 aagtcctagctcaactgacaaaatgcggaaattgttaggccg 4126621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 11797527 - 11797478
Alignment:
Q  297 ttcacaagtcctaactcaactgacaatatgctgaaattgttaggccgaat 346  Q
    |||| ||||||||||||||||| ||| |||  ||||||||||||||||||    
T  11797527 ttcaaaagtcctaactcaactggcaaaatgtcgaaattgttaggccgaat 11797478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 32880702 - 32880661
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    ||||||||||||||||| ||| |||| |||||||||||||||    
T  32880702 aagtcctaactcaactggcaaaatgccgaaattgttaggccg 32880661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 39522881 - 39522840
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    ||||||||||||||||| ||| |||| |||||||||||||||    
T  39522881 aagtcctaactcaactggcaaaatgcagaaattgttaggccg 39522840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 11786105 - 11786149
Alignment:
Q  299 cacaagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    ||||||| ||| ||||||||| || ||||||||||||||||||||    
T  11786105 cacaagttctagctcaactgataaaatgctgaaattgttaggccg 11786149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 48731879 - 48731839
Alignment:
Q  302 aagtcctaactcaactgacaatatgctgaaattgttaggcc 342  Q
    |||||||| |||||||||||| |||| ||||||||||||||    
T  48731879 aagtcctagctcaactgacaaaatgccgaaattgttaggcc 48731839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 49500863 - 49500907
Alignment:
Q  299 cacaagtcctaactcaactgacaatatgctgaaattgttaggccg 343  Q
    ||||||||||| |||||||| ||| |||| |||||||||||||||    
T  49500863 cacaagtcctagctcaactggcaaaatgccgaaattgttaggccg 49500907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University