View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17910_high_3 (Length: 350)

Name: NF17910_high_3
Description: NF17910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17910_high_3
NF17910_high_3
[»] chr4 (4 HSPs)
chr4 (1-338)||(48951027-48951364)
chr4 (142-262)||(48912479-48912599)
chr4 (159-254)||(48958086-48958181)
chr4 (184-262)||(48974085-48974163)
[»] scaffold0536 (3 HSPs)
scaffold0536 (2-302)||(1547-1847)
scaffold0536 (184-269)||(6638-6723)
scaffold0536 (158-305)||(10584-10731)
[»] chr6 (2 HSPs)
chr6 (159-262)||(12483601-12483704)
chr6 (159-308)||(12590260-12590409)
[»] chr8 (1 HSPs)
chr8 (159-269)||(12641608-12641718)
[»] chr2 (1 HSPs)
chr2 (193-269)||(13448339-13448415)


Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 48951027 - 48951364
Alignment:
Q  1 cgaacaacatctttagcaatttttgctaactcttgggctttgtttctaatttggacagcttcatcacccccatccatcaaccttctcatagccttcttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48951027 cgaacaacatctttagcaatttttgctaactcttgggctttgtttctaatttggacagcttcatcacccccatccatcaaccttctcatagccttcttta 48951126  T
Q  101 taaaatctctcttcaccaactttttcatatctcgaaaagctgttgtgatccattcatctgcacctacttccactcctatcccacgcacatgagttatgag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48951127 taaaatctctcttcaccaactttttcatatctcgaaaagctgttgtgatccactcatctgcacctacttccactcctatcccacgcacatgagttatgag 48951226  T
Q  201 cttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctccgtcacagagttccacccacaatgtgtcaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48951227 cttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctccgtcacagagttccacccacaatgtgtcaaa 48951326  T
Q  301 aacgcgccaacagcaggatgccctaatataaccatctg 338  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  48951327 aacgcgccaacggcaggatgccctaatataaccatctg 48951364  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 262
Target Start/End: Complemental strand, 48912599 - 48912479
Alignment:
Q  142 gttgtgatccattcatctgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtga 241  Q
    |||||| |||||||   |||||| || ||||| || |||||| |||| || ||||| | |||||||||||| ||||| || | ||||| |||||||||||    
T  48912599 gttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaactgttctccatgcatcggccacgtga 48912500  T
Q  242 tcatcggaacccctacactaa 262  Q
    |||| ||||||||| ||||||    
T  48912499 tcattggaacccctgcactaa 48912479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 48958086 - 48958181
Alignment:
Q  159 tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccc 254  Q
    |||||| || ||||| || || || ||||||| |||||| | ||||||||||||||| || || | ||||||||||||||||||||| ||||||||    
T  48958086 tgcaccaacctccaccccaattcctcgcacattagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccc 48958181  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 48974085 - 48974163
Alignment:
Q  184 cgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaa 262  Q
    ||||| |||||||| | |||||| |||||||| || ||   |||||| |||||||||||||| ||||||||| ||||||    
T  48974085 cgcacctgagttatcaacttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcactaa 48974163  T

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Target: scaffold0536 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 2 - 302
Target Start/End: Complemental strand, 1847 - 1547
Alignment:
Q  2 gaacaacatctttagcaatttttgctaactcttgggctttgtttctaatttggacagcttcatcacccccatccatcaaccttctcatagccttctttat 101  Q
    ||||||||| |||||| |||||||| | |||||| ||| |   ||| ||||| |  ||||||||||| |  ||||||||||| || | ||||||||||||    
T  1847 gaacaacatgtttagctatttttgcaatctcttgagctctacgtcttatttgaatggcttcatcaccactgtccatcaacctccttaaagccttctttat 1748  T
Q  102 aaaatctctcttcaccaactttttcatatctcgaaaagctgttgtgatccattcatctgcacctacttccactcctatcccacgcacatgagttatgagc 201  Q
    |  |||||||   |  | ||||| ||| || ||||||||  | || | ||| ||||||||||| ||||||||||| |||||| |||| |||||||| | |    
T  1747 acgatctctccctattagcttttccatgtcccgaaaagcaatggtaagccactcatctgcaccgacttccactccaatcccatgcacctgagttatcaac 1648  T
Q  202 ttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctccgtcacagagttccacccacaatgtgtcaaaa 301  Q
     | || || ||||| ||||||||||| || ||||| |||||||| ||||  ||| |||||| |||||| || | ||||||||||||||||||||||||||    
T  1647 gtttcgttatagaattgatcactatgtactggccatgtgatcattggaattcctgcactaacagcctcggttatagagttccacccacaatgtgtcaaaa 1548  T
Q  302 a 302  Q
    |    
T  1547 a 1547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 6723 - 6638
Alignment:
Q  184 cgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctc 269  Q
    ||||| || ||||| | ||| |||||||| || || || | ||||||||||||||||||||||||||||||| |||||| ||||||    
T  6723 cgcacctgtgttatcaacttttcattgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctc 6638  T

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Target: scaffold0536; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 305
Target Start/End: Complemental strand, 10731 - 10584
Alignment:
Q  158 ctgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctac 257  Q
    ||||||| |||||| | || ||||| ||||| || ||||| | |||||||||||| || || || | |||||  |||||||||||||| ||||||||| |    
T  10731 ctgcacccacttcccccccaatcccccgcacttgcgttatcaacttctcattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgc 10632  T
Q  258 actaatagcctccgtcacagagttccacccacaatgtgtcaaaaacgc 305  Q
    |||||  ||||||      || ||||||||||||||||||| ||||||    
T  10631 actaaccgcctccacggtggaattccacccacaatgtgtcataaacgc 10584  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 262
Target Start/End: Complemental strand, 12483704 - 12483601
Alignment:
Q  159 tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctaca 258  Q
    |||||| |||||||| || ||||| ||||||| ||||||||| ||||||||||| || || ||||  || ||||||||||||||||| |||| |||| ||    
T  12483704 tgcaccgacttccacaccaatccctcgcacattagttatgagtttctcattgtaaaaatgttcaccgtgaaccggccacgtgatcattggaatccctgca 12483605  T
Q  259 ctaa 262  Q
    ||||    
T  12483604 ctaa 12483601  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 308
Target Start/End: Complemental strand, 12590409 - 12590260
Alignment:
Q  159 tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctaca 258  Q
    |||||| ||||||||||| || ||| |||||| |||||| | |||||||||||| || || |||| || ||  ||||| |||||||||||||  ||  ||    
T  12590409 tgcaccaacttccactccaattccatgcacatcagttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcggaattccagca 12590310  T
Q  259 ctaatagcctccgtcacagagttccacccacaatgtgtcaaaaacgcgcc 308  Q
    ||||  ||||||   || || ||||| ||||||||||||| |||||||||    
T  12590309 ctaaccgcctccacgacggaattccatccacaatgtgtcataaacgcgcc 12590260  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 12641718 - 12641608
Alignment:
Q  159 tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctaca 258  Q
    |||||| || ||||| || ||||  ||||||  |||||| ||||||||||| |||||||| || |  ||||| |||||||||||||| |||| |||| ||    
T  12641718 tgcacccacctccaccccaatccttcgcacaacagttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctgca 12641619  T
Q  259 ctaatagcctc 269  Q
    |||| ||||||    
T  12641618 ctaacagcctc 12641608  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 13448339 - 13448415
Alignment:
Q  193 gttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctc 269  Q
    ||||| || |||||||||||||| ||||| | ||| ||||||||||| ||||| ||||| ||  |||||| ||||||    
T  13448339 gttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctc 13448415  T

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