View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17910_high_4 (Length: 332)
Name: NF17910_high_4
Description: NF17910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17910_high_4 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 3 - 332
Target Start/End: Complemental strand, 16961724 - 16961395
Alignment:
| Q |
3 |
agcagcaccacagatttctgcaacattgaacctactccatatttaacactagtgtgctatgaagaaaatgttacacagttgcatgttgttggaaacaaca |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16961724 |
agcagcaccacagatttctgcaacattgaacctactccatatttaacactagtgtgctatgaagaaaatgttacacagttgcatgttgttggaaacacca |
16961625 |
T |
|
| Q |
103 |
atgagtttacttcattgcctcaaaatttcaactcatacacactcttttcaacactttccactttatcaagcttgaaagtactctctttggtttctcttgg |
202 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16961624 |
atgagttcacctcattgcctcaaaatttcaactcatacacactcttttcaacactttccactttatcaagcttgaaagtactctctttggtttcacttgg |
16961525 |
T |
|
| Q |
203 |
tttatgggggccactacctgaaacaatagctcaattatcttcactagaaatacttaacattagctcaaattactttagtggagaaataccatctcagctt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
16961524 |
tttatgggggccactacctgaaacaatagctcaattatcttcactagaaatacttaacattagctcaaattactttagtggagaaataccatctcaactt |
16961425 |
T |
|
| Q |
303 |
tcacatcttaacaatcttcaatcactagta |
332 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |
|
|
| T |
16961424 |
tcacatcttaacaatcttcaatcattagta |
16961395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University