View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17910_low_1 (Length: 650)

Name: NF17910_low_1
Description: NF17910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17910_low_1
NF17910_low_1
[»] chr6 (11 HSPs)
chr6 (184-631)||(19544775-19545208)
chr6 (11-106)||(19545286-19545381)
chr6 (190-247)||(22395459-22395516)
chr6 (203-252)||(26587846-26587895)
chr6 (375-494)||(7680381-7680500)
chr6 (204-247)||(14746620-14746663)
chr6 (20-83)||(22395621-22395684)
chr6 (22-106)||(20733384-20733468)
chr6 (15-91)||(27852027-27852104)
chr6 (203-252)||(26588163-26588212)
chr6 (20-96)||(14746424-14746500)
[»] chr4 (29 HSPs)
chr4 (184-631)||(18554351-18554784)
chr4 (189-631)||(13268074-13268507)
chr4 (11-106)||(18554862-18554957)
chr4 (18-106)||(13267886-13267974)
chr4 (18-104)||(13235113-13235199)
chr4 (375-537)||(30274903-30275065)
chr4 (18-94)||(20872382-20872460)
chr4 (18-104)||(12230693-12230774)
chr4 (18-106)||(13559511-13559599)
chr4 (18-102)||(22201298-22201384)
chr4 (189-253)||(13559360-13559424)
chr4 (189-249)||(15870945-15871005)
chr4 (189-252)||(12230863-12230926)
chr4 (18-106)||(15888680-15888759)
chr4 (189-246)||(19727534-19727591)
chr4 (15-106)||(10057496-10057587)
chr4 (204-247)||(17419551-17419594)
chr4 (30-106)||(9886806-9886885)
chr4 (375-496)||(16714075-16714196)
chr4 (18-106)||(15871105-15871183)
chr4 (189-249)||(15888520-15888580)
chr4 (204-242)||(9886991-9887029)
chr4 (204-244)||(20872219-20872259)
chr4 (318-374)||(30275045-30275101)
chr4 (202-281)||(18551033-18551111)
chr4 (445-491)||(17339375-17339421)
chr4 (204-253)||(13235293-13235342)
chr4 (22-106)||(18453632-18453717)
chr4 (204-252)||(30275171-30275219)
[»] scaffold0094 (2 HSPs)
scaffold0094 (184-631)||(2131-2563)
scaffold0094 (11-106)||(2641-2736)
[»] chr2 (13 HSPs)
chr2 (192-631)||(18984899-18985329)
chr2 (11-102)||(18985377-18985468)
chr2 (18-102)||(22497352-22497439)
chr2 (18-106)||(26861358-26861446)
chr2 (375-551)||(23212010-23212185)
chr2 (203-281)||(26861178-26861256)
chr2 (15-106)||(34858332-34858423)
chr2 (15-106)||(34873394-34873485)
chr2 (189-252)||(29718092-29718155)
chr2 (17-91)||(27473279-27473354)
chr2 (18-72)||(13361850-13361904)
chr2 (204-268)||(18784118-18784182)
chr2 (212-252)||(22497195-22497234)
[»] chr8 (16 HSPs)
chr8 (203-376)||(10453942-10454116)
chr8 (375-629)||(26858819-26859079)
chr8 (375-502)||(10453848-10453964)
chr8 (203-258)||(15727826-15727881)
chr8 (18-106)||(10454229-10454318)
chr8 (15-106)||(22237190-22237281)
chr8 (21-102)||(1683100-1683182)
chr8 (15-91)||(19807548-19807625)
chr8 (25-95)||(15727628-15727699)
chr8 (461-499)||(15728067-15728105)
chr8 (18-95)||(19862151-19862229)
chr8 (18-95)||(19866788-19866866)
chr8 (215-264)||(19862363-19862412)
chr8 (215-264)||(19867000-19867049)
chr8 (19-72)||(26859384-26859437)
chr8 (18-78)||(24678453-24678513)
[»] scaffold0290 (3 HSPs)
scaffold0290 (11-106)||(11993-12088)
scaffold0290 (508-631)||(11702-11832)
scaffold0290 (192-244)||(11838-11890)
[»] chr7 (14 HSPs)
chr7 (375-502)||(48379123-48379250)
chr7 (375-502)||(13773603-13773730)
chr7 (18-106)||(11800121-11800209)
chr7 (415-628)||(2243260-2243479)
chr7 (18-106)||(9693134-9693222)
chr7 (189-253)||(9692983-9693047)
chr7 (189-247)||(16068058-16068116)
chr7 (375-424)||(15864949-15864998)
chr7 (21-106)||(16379171-16379257)
chr7 (18-91)||(11091471-11091545)
chr7 (232-303)||(15865053-15865124)
chr7 (334-376)||(15864976-15865018)
chr7 (577-629)||(13474765-13474817)
chr7 (240-303)||(48379008-48379071)
[»] chr3 (25 HSPs)
chr3 (375-501)||(17958927-17959053)
chr3 (18-106)||(22161611-22161699)
chr3 (375-502)||(14057445-14057572)
chr3 (379-502)||(16932729-16932852)
chr3 (18-102)||(10302610-10302694)
chr3 (18-106)||(21999416-21999504)
chr3 (20-106)||(10340938-10341024)
chr3 (18-106)||(21976985-21977073)
chr3 (15-102)||(27868423-27868510)
chr3 (18-102)||(19186663-19186747)
chr3 (375-579)||(16928759-16928963)
chr3 (375-550)||(14479222-14479397)
chr3 (189-253)||(10302774-10302838)
chr3 (15-106)||(52988998-52989089)
chr3 (203-252)||(19186851-19186900)
chr3 (205-253)||(10341127-10341175)
chr3 (18-106)||(16357977-16358056)
chr3 (189-249)||(21977160-21977220)
chr3 (189-249)||(21999591-21999651)
chr3 (189-249)||(22161786-22161846)
chr3 (203-252)||(16357816-16357864)
chr3 (20-105)||(21028662-21028748)
chr3 (203-252)||(16928619-16928668)
chr3 (230-266)||(14479486-14479522)
chr3 (232-303)||(17959107-17959178)
[»] chr1 (14 HSPs)
chr1 (375-499)||(51624630-51624754)
chr1 (375-578)||(10390166-10390369)
chr1 (18-83)||(15544162-15544227)
chr1 (18-106)||(17451271-17451362)
chr1 (205-253)||(21496633-21496681)
chr1 (15-106)||(21995804-21995895)
chr1 (461-508)||(24852447-24852494)
chr1 (203-252)||(17451474-17451523)
chr1 (218-252)||(15545327-15545361)
chr1 (442-496)||(43154161-43154215)
chr1 (46-83)||(21496450-21496487)
chr1 (18-106)||(31344038-31344127)
chr1 (216-265)||(43154372-43154421)
chr1 (461-497)||(15545554-15545590)
[»] scaffold0003 (2 HSPs)
scaffold0003 (375-502)||(132913-133040)
scaffold0003 (232-303)||(132790-132861)
[»] scaffold0091 (2 HSPs)
scaffold0091 (375-501)||(31380-31506)
scaffold0091 (232-303)||(31256-31327)
[»] scaffold0063 (2 HSPs)
scaffold0063 (375-502)||(25846-25973)
scaffold0063 (232-303)||(26014-26085)
[»] scaffold0385 (2 HSPs)
scaffold0385 (18-106)||(16012-16100)
scaffold0385 (189-252)||(16200-16263)
[»] scaffold0118 (2 HSPs)
scaffold0118 (18-106)||(11835-11924)
scaffold0118 (189-238)||(12011-12060)
[»] scaffold0218 (2 HSPs)
scaffold0218 (375-502)||(16727-16854)
scaffold0218 (232-304)||(16604-16676)
[»] chr5 (16 HSPs)
chr5 (372-522)||(24829661-24829811)
chr5 (18-106)||(23909047-23909135)
chr5 (21-106)||(13938830-13938917)
chr5 (22-106)||(14137821-14137906)
chr5 (195-247)||(25756303-25756355)
chr5 (189-267)||(14138005-14138083)
chr5 (189-247)||(25791883-25791941)
chr5 (188-250)||(32948866-32948927)
chr5 (375-496)||(13939172-13939293)
chr5 (396-521)||(14138192-14138315)
chr5 (203-249)||(25581329-25581374)
chr5 (203-252)||(13939029-13939078)
chr5 (20-106)||(25791694-25791782)
chr5 (442-498)||(23949805-23949861)
chr5 (204-252)||(24564977-24565025)
chr5 (31-96)||(25581498-25581565)
[»] scaffold0364 (1 HSPs)
scaffold0364 (188-253)||(14617-14682)
[»] scaffold0395 (1 HSPs)
scaffold0395 (12-106)||(11707-11801)
[»] scaffold0207 (1 HSPs)
scaffold0207 (188-249)||(737-797)
[»] scaffold0032 (1 HSPs)
scaffold0032 (15-105)||(68118-68208)
[»] scaffold0153 (2 HSPs)
scaffold0153 (15-92)||(5121-5199)
scaffold0153 (15-92)||(12141-12219)
[»] scaffold0686 (1 HSPs)
scaffold0686 (18-106)||(1263-1351)
[»] scaffold0074 (1 HSPs)
scaffold0074 (15-106)||(1759-1850)
[»] scaffold0408 (2 HSPs)
scaffold0408 (204-247)||(15055-15098)
scaffold0408 (20-106)||(14860-14946)
[»] scaffold1043 (1 HSPs)
scaffold1043 (189-247)||(516-574)
[»] scaffold0174 (1 HSPs)
scaffold0174 (15-104)||(13458-13547)
[»] scaffold0381 (2 HSPs)
scaffold0381 (30-106)||(11659-11738)
scaffold0381 (204-242)||(11515-11553)
[»] scaffold0149 (1 HSPs)
scaffold0149 (203-281)||(35443-35520)
[»] scaffold0048 (1 HSPs)
scaffold0048 (380-522)||(54490-54631)
[»] scaffold0010 (1 HSPs)
scaffold0010 (189-247)||(143158-143216)
[»] scaffold0670 (1 HSPs)
scaffold0670 (202-281)||(6503-6581)
[»] scaffold0035 (1 HSPs)
scaffold0035 (215-264)||(15389-15438)


Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 184 - 631
Target Start/End: Complemental strand, 19545208 - 19544775
Alignment:
Q  184 attaaaagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattctagctttggcttgatt 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  19545208 attaaaagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattccagttttggcttgatt 19545109  T
Q  284 ccgtcgcagctagggtttctccttttctcctcccctcttctctattttcaacgttcaacaagggtgacccttctaactcctaatgtttctattctaactc 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||                     ||||||    
T  19545108 ccgtcgcagctagggtttctccttttctcctcccctcttctctattttcaacgttcaacaagagtgacccttc---------------------taactc 19545030  T
Q  384 ctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccacttatttgaaact 483  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19545029 ctaatgtttctatttataattgggtcaatcacttgttataattttctcctcctctattcactattattttactcatcccctcccccacttatttgaaact 19544930  T
Q  484 tatattctacacctccgacactattttattttgttttgatgcctctctttatttaaaataaattctcgtactacttatcaatcctcatcaata------- 576  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  19544929 tatattctacacctccgacactattttattttgttttgatgcctctctttatttaaaataaattctcgtactacttatcaatcctcatcaatattctatc 19544830  T
Q  577 ttcttaacaacaaaataacaatcaagctaaagcagcatcaataataatattaacc 631  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  19544829 ttcttaaaaacaaaataacattcaagctaaagcagcatcaataataatattaacc 19544775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 19545381 - 19545286
Alignment:
Q  11 catcatcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19545381 catcatcaccctatcattcaaacactaattcttcgttaacctaccagattatccactctttttaagactaaaactcaattcaaaaacctaaactag 19545286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 22395516 - 22395459
Alignment:
Q  190 agacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttac 247  Q
    |||||||||||  |||||| ||||||||||||||||||||||||| ||||||||||||    
T  22395516 agacaaccctcccatcatatattaagataccctaaagtgcaaagactctcccccttac 22395459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 26587846 - 26587895
Alignment:
Q  203 atcatagattaagataccctaaagtgcaaagattctcccccttacctcga 252  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  26587846 atcatagattaagataccctaaagtgaaaagattctcccctttacctcga 26587895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 375 - 494
Target Start/End: Complemental strand, 7680500 - 7680381
Alignment:
Q  375 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 474  Q
    ||||||||| |||  |||||||||||| | ||| |  ||||||||||  ||| ||| |   |||| |||||||| |||||| | ||||||||||||||||    
T  7680500 ttctaactcttaacctttctatttatattagggccggtcacttgttaagattctcttccactctactcactattcttttacacttcccctcccccactta 7680401  T
Q  475 tttgaaacttatattctaca 494  Q
    ||| ||||||||||||||||    
T  7680400 tttaaaacttatattctaca 7680381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 14746620 - 14746663
Alignment:
Q  204 tcatagattaagataccctaaagtgcaaagattctcccccttac 247  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  14746620 tcatagattaagataccctatagtgcaaagattctcccccttac 14746663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 22395684 - 22395621
Alignment:
Q  20 cctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaa 83  Q
    ||||||||||||||||||||  || |||||||||||  ||||| ||||||||||||||||||||    
T  22395684 cctatcattcaaacactaatcatttgttaacctaccggattattcactctttttaagactaaaa 22395621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 20733468 - 20733384
Alignment:
Q  22 tatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 106  Q
    |||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  20733468 tatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacctaaactag 20733384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 27852027 - 27852104
Alignment:
Q  15 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattc 91  Q
    ||||||||||||||  |||||||||| ||| | |||||||  ||||||||||||||||||| |||| |||||||||||    
T  27852027 atcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaatactagaaactcaattc 27852104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 26588163 - 26588212
Alignment:
Q  203 atcatagattaagataccctaaagtgcaaagattctcccccttacctcga 252  Q
    |||||||||||||||||||||||||| || ||  ||||||||||||||||    
T  26588163 atcatagattaagataccctaaagtgaaaggaacctcccccttacctcga 26588212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 14746424 - 14746500
Alignment:
Q  20 cctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaa 96  Q
    ||||||||| ||||||||||  || |||||||||||  ||| | ||||||||| |||||||||| |||||| |||||    
T  14746424 cctatcattaaaacactaatcatttgttaacctaccgaattgttcactcttttcaagactaaaattcaattaaaaaa 14746500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 184 - 631
Target Start/End: Complemental strand, 18554784 - 18554351
Alignment:
Q  184 attaaaagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattctagctttggcttgatt 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  18554784 attaaaagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgatcccttcgaaaattccagctttggcttgatt 18554685  T
Q  284 ccgtcgcagctagggtttctccttttctcctcccctcttctctattttcaacgttcaacaagggtgacccttctaactcctaatgtttctattctaactc 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||                     ||||||    
T  18554684 ccgtcgcagctagggtttctccttttctcctcccctcttctctattttcaacaatcaacaagagtgacccttc---------------------taactc 18554606  T
Q  384 ctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccacttatttgaaact 483  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18554605 ctaatgtttctatttataattgggtcaatcacttgttataattttctcctcctctattcactattattttactcatcccctcccccagttatttgaaact 18554506  T
Q  484 tatattctacacctccgacactattttattttgttttgatgcctctctttatttaaaataaattctcgtactacttatcaatcctcatcaata------- 576  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  18554505 tatattctacacctccaacactattttattttgttttgatgcctctctttatttaaaataaattctcgtactacttatcaatcctcatcaatattctatc 18554406  T
Q  577 ttcttaacaacaaaataacaatcaagctaaagcagcatcaataataatattaacc 631  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  18554405 ttcttaaaaacaaaataacattcaagctaaagcagcatcaataataatattaacc 18554351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 189 - 631
Target Start/End: Original strand, 13268074 - 13268507
Alignment:
Q  189 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattctagctttggcttgattccgtc 288  Q
    |||| |||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||    
T  13268074 aagaaaaccctcccatcataaattaagataccctaaagtgcaaagattctcccccttacctcgattcccttgaaaattccagctttggcttgattccgtc 13268173  T
Q  289 gcagctagggtttctccttttctcctcccctcttctctattttcaacgttcaacaagggtgacccttctaactcctaatgtttctattctaactcctaat 388  Q
     ||||||||||||||||||||||||| ||||||||||||||||| ||||| | |||  || |||||||||| || ||||||||||                   
T  13268174 ccagctagggtttctccttttctcctaccctcttctctattttccacgttgagcaaaagtaacccttctaattcataatgtttct--------------- 13268258  T
Q  389 gtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccacttatttgaaacttatat 488  Q
          |||||||| ||||||||||||||||||||||| ||| ||| ||  ||||||||| |||||||| ||||||| ||||||||||||||||||||||    
T  13268259 ------atttataagtgggtcaatcacttgttataattttcttctcctccgttcactattcttttactcctcccctctcccacttatttgaaacttatat 13268352  T
Q  489 tctacacctccgacactatt-----ttattttgttttgatgcctctctttatttaaaataaattctcgtactacttatcaatcctcatcaatattc---- 579  Q
    ||||||||||||||||||||     || |||||||||||| | |||||||||||||  ||||||||| ||||||||||||||||||||||||||||        
T  13268353 tctacacctccgacactattttttatttttttgttttgattcatctctttatttaatttaaattctcatactacttatcaatcctcatcaatattctatc 13268452  T
Q  580 ---ttaacaacaaaataacaatcaagctaaagcagcatcaataataatattaacc 631  Q
       ||||||||||||||| | |||||||||||||||||||||||||||| |||||    
T  13268453 tttttaacaacaaaataatattcaagctaaagcagcatcaataataatactaacc 13268507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 18554957 - 18554862
Alignment:
Q  11 catcatcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18554957 catcatcaccctatcattcaaacactaattcttcgttaacctaccagattatccactctttttaagactaaaactcaattcaaaaacctaaactag 18554862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 13267886 - 13267974
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 106  Q
    ||||||||||||||| ||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  13267886 accctatcattcaaaaactaattcttcgttaacctacctgattatccactttttttaagactaaaactcaattcaaaaatctaaactag 13267974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 13235113 - 13235199
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaact 104  Q
    ||||||||||||| ||||||||| ||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||    
T  13235113 accctatcattcatacactaattattcgttaacctaccgaaatatccactctttttaagactaaaactcaattcaaaaacctaaact 13235199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 375 - 537
Target Start/End: Complemental strand, 30275065 - 30274903
Alignment:
Q  375 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 474  Q
    ||||||||||||||||||||| ||||| ||||| ||  |||||| ||||||  | | ||| |||||||| |||| |||||||   |||||||||||||||    
T  30275065 ttctaactcctaatgtttctacttatatttgggccagccacttgctataatcattttctcctctattcagtattcttttacttcccccctcccccactta 30274966  T
Q  475 tttgaaacttatattctacacctccgacactattttattttgttttgatgcctctctttattt 537  Q
    ||| ||||||||||||||||||| |||| |||| ||||||| ||||||| |||| ||| ||||    
T  30274965 tttaaaacttatattctacaccttcgactctatattattttattttgattcctcccttcattt 30274903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 20872460 - 20872382
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaag--actaaaactcaattcaaa 94  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |  |||||||||||||||    
T  20872460 accctatcattcaaacactaattcttcgttaacctaccagattatccactctttttaagtcaaaaaaactcaattcaaa 20872382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 12230693 - 12230774
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaact 104  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||     |||||| ||||||||||||| ||||||    
T  12230693 accctatcattcaaacactaattcttcgttaacctaccagattatccactctttt-----ctaaaattcaattcaaaaacataaact 12230774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 13559599 - 13559511
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 106  Q
    ||||||||||||||| || |||| ||| ||||||||||| ||||||||||||||| ||| ||||||||||||| |||||| ||||||||    
T  13559599 accctatcattcaaataccaattattcattaacctaccagattatccactcttttaaaggctaaaactcaattaaaaaacttaaactag 13559511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 22201298 - 22201384
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagact--aaaactcaattcaaaaacctaaa 102  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||  |  |||||| ||||||||||||||||    
T  22201298 accctatcatttaaacactaattcttcgttaacctaccagattatcaactctttttaaggttaaaaaacttaattcaaaaacctaaa 22201384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 13559424 - 13559360
Alignment:
Q  189 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgat 253  Q
    ||||||||||||  ||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  13559424 aagacaaccctcccatcatagattaagatactctaaagtgcaaagattctcctccttacctcgat 13559360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 15871005 - 15870945
Alignment:
Q  189 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacct 249  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||    
T  15871005 aagacaaccctcccatcataaattaagataccctaaagtgcaaagattctcccccttacct 15870945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 12230863 - 12230926
Alignment:
Q  189 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcga 252  Q
    ||||||||||||  || ||||||||||||||||||||||||||||||| |||||||||||||||    
T  12230863 aagacaaccctcccataatagattaagataccctaaagtgcaaagattatcccccttacctcga 12230926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 15888759 - 15888680
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 106  Q
    ||||||||||| ||||||||||||||||||||||||||  ||||||||||         ||||||||||||||||||||||||||||||    
T  15888759 accctatcattgaaacactaattcttcgttaacctacctgattatccact---------actaaaactcaattcaaaaacctaaactag 15888680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 19727591 - 19727534
Alignment:
Q  189 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctccccctta 246  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||| |||||    
T  19727591 aagacaaccctcccgtcatagattaagataccctaaagtgcaaagattctccgcctta 19727534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 10057496 - 10057587
Alignment:
Q  15 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 106  Q
    ||||||||||||||  ||| |||||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  10057496 atcaccctatcattataactctaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacctaaactag 10057587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 17419551 - 17419594
Alignment:
Q  204 tcatagattaagataccctaaagtgcaaagattctcccccttac 247  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  17419551 tcatagattaagataccctaaagtgcaaagattcttccccttac 17419594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 9886806 - 9886885
Alignment:
Q  30 aaacactaattcttcgttaacctaccatattatccactctttttaagact---aaaactcaattcaaaaacctaaactag 106  Q
    |||||||||||||| |||||| ||||  ||||||||||| ||||||| ||   |||||||||||||||||| ||||||||    
T  9886806 aaacactaattctttgttaacttaccggattatccactcattttaaggctaaaaaaactcaattcaaaaacataaactag 9886885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 375 - 496
Target Start/End: Original strand, 16714075 - 16714196
Alignment:
Q  375 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 474  Q
    |||||||| |||| ||||||||||||| | |||  | ||||||||| ||||| |   ||| |||| |||||||| |||||||    ||||||||||||||    
T  16714075 ttctaacttctaaggtttctatttatattcgggaaagtcacttgttgtaattcttatctcctctactcactattcttttacttcctccctcccccactta 16714174  T
Q  475 tttgaaacttatattctacacc 496  Q
    ||| ||||||||||| ||||||    
T  16714175 tttaaaacttatattatacacc 16714196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 15871183 - 15871105
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 106  Q
    ||||||||||| |||||||||||||| |||||||||||  ||||||||||         ||||||||||||||||||||||||||||||    
T  15871183 accctatcattgaaacactaattctt-gttaacctacctgattatccact---------actaaaactcaattcaaaaacctaaactag 15871105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 15888580 - 15888520
Alignment:
Q  189 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacct 249  Q
    ||||||||||||  |||||| ||| ||||| |||||||||||||||||||||| |||||||    
T  15888580 aagacaaccctcccatcataaatttagatatcctaaagtgcaaagattctccctcttacct 15888520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 9886991 - 9887029
Alignment:
Q  204 tcatagattaagataccctaaagtgcaaagattctcccc 242  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  9886991 tcatatattaagataccctaaagtgcaaagattctcccc 9887029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 20872259 - 20872219
Alignment:
Q  204 tcatagattaagataccctaaagtgcaaagattctccccct 244  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  20872259 tcatatattaagatacccaaaagtgcaaagattctccccct 20872219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 30275101 - 30275045
Alignment:
Q  318 ctcttctctattttcaacgttcaacaagggtgacccttctaactcctaatgtttcta 374  Q
    |||||||||  |||| |||||||||||  ||||| ||||||||||||||||||||||    
T  30275101 ctcttctcttgtttctacgttcaacaaaagtgacacttctaactcctaatgtttcta 30275045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 18551111 - 18551033
Alignment:
Q  202 tatcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattctagctttggcttga 281  Q
    ||||||||||||| | |||||||||||  |  | ||||||||||||||||| ||||||||||| ||| | ||||||||||    
T  18551111 tatcatagattaa-acaccctaaagtggtagtaatctcccccttacctcgaatccttcgaaaaatctggttttggcttga 18551033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 445 - 491
Target Start/End: Original strand, 17339375 - 17339421
Alignment:
Q  445 tattattttactcatcccctcccccacttatttgaaacttatattct 491  Q
    |||| |||||| | ||||||||||||||||||| |||||||||||||    
T  17339375 tattcttttacacctcccctcccccacttatttaaaacttatattct 17339421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 13235293 - 13235342
Alignment:
Q  204 tcatagattaagataccctaaagtgcaaagattctcccccttacctcgat 253  Q
    ||||| ||||| |||||||||||||||||||||| |||  ||||||||||    
T  13235293 tcataaattaatataccctaaagtgcaaagattcccccgtttacctcgat 13235342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 18453632 - 18453717
Alignment:
Q  22 tatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaa-actcaattcaaaaacctaaactag 106  Q
    |||||||| ||||||||| || | |||||| | | ||||||| || ||||||||| ||| | ||||||||||||| ||||||||||    
T  18453632 tatcattccaacactaatcctccattaacccatcttattatctacactttttaagtctatagactcaattcaaaaccctaaactag 18453717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 30275219 - 30275171
Alignment:
Q  204 tcatagattaagataccctaaagtgcaaagattctcccccttacctcga 252  Q
    ||||||| |||| |||||||||||| || ||||||||| ||||||||||    
T  30275219 tcatagaataagttaccctaaagtgaaatgattctcccacttacctcga 30275171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 184 - 631
Target Start/End: Complemental strand, 2563 - 2131
Alignment:
Q  184 attaaaagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattctagctttggcttgatt 283  Q
    ||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  2563 attaaaatataaccctcatatcatagattaagataccctaaa-tgcaaagattctcccccttacctcgattcctttgaaaattccagctttggcttgatt 2465  T
Q  284 ccgtcgcagctagggtttctccttttctcctcccctcttctctattttcaacgttcaacaagggtgacccttctaactcctaatgtttctattctaactc 383  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||| |||                     |||    
T  2464 ccgtcacagctagggtttctccttttctcctcccctcttctctattttcaacgttcagcaaaagtgacccttataa---------------------ctc 2386  T
Q  384 ctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccacttatttgaaact 483  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2385 ctaatgtttctatttataattgggtcaatcacttgttataattttctcctcctctgttcactattattttactcatcccctcccccacttatttgaaact 2286  T
Q  484 tatattctacacctccgacactattttattttgttttgatgcctctctttatttaaaataaattctcgtactacttatcaatcctcatcaata------- 576  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||           
T  2285 tatattctacacctccgacactattttattttgttttgattcctctccttatttaaaataaattctcgtactacttatcaatcatcatcaatattctatc 2186  T
Q  577 ttcttaacaacaaaataacaatcaagctaaagcagcatcaataataatattaacc 631  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2185 ttcttaacaacaaaataacattcaagctaaagcagcatcaataataatattaacc 2131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 2736 - 2641
Alignment:
Q  11 catcatcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 106  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2736 catcatcaccctattattcaaacactaattcttcgttaacctgccagattatccactctttttaagactaaaactcaattcaaaaacttaaactag 2641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 192 - 631
Target Start/End: Complemental strand, 18985329 - 18984899
Alignment:
Q  192 acaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattctagctttggcttgattccgtcgca 291  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| |||||| | |||| |||||||||||| |||    
T  18985329 acaaccctcctatcatagattacgataccctaatgtgcaaagattctcccccttatctcgattccttcgcaaattccaactttagcttgattccgttgca 18985230  T
Q  292 gctagggtttctccttttctcctcccctcttctctattttcaacgttcaacaagggtgacccttctaactcctaatgtttctattctaactcctaatgtt 391  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||  | ||||||||                     ||| ||||||||||    
T  18985229 gctagggtttctccttttctcctcccctcttctctattttccacgttcaacaaaagcgacccttc---------------------taaatcctaatgtt 18985151  T
Q  392 tctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttact-----catcccctcccccacttatttgaaacttat 486  Q
    ||||||||||||||||||||||||||||||||||| |||  || | | ||||||||| |||||||     | ||||||||||||||||||||||||||||    
T  18985150 tctatttataattgggtcaatcacttgttataattttcttatccttttttcactattcttttactcctcccctcccctcccccacttatttgaaacttat 18985051  T
Q  487 attctacacctccgacactattttattttgttttgatgcctctctttatttaaaataaattctcgtactacttatcaatcctcatcaata-------ttc 579  Q
    |||||||||| ||||||||||||||| |||||||||| |||| |||||||||| |||||||||| |||||||||||||||||||||||||       |||    
T  18985050 attctacacccccgacactattttatcttgttttgattcctcactttatttaatataaattctcatactacttatcaatcctcatcaatattctatcttc 18984951  T
Q  580 ttaacaacaaaataacaatcaagctaaagcagcatcaataataatattaacc 631  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18984950 ttaacaacaaaataacattcaagctaaagcagcatcaataataatattaacc 18984899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 18985468 - 18985377
Alignment:
Q  11 catcatcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaa 102  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| ||||||||||    
T  18985468 catcatcaacctatcattcaaacactaattcttcgttaacctaccagattgtccactctttttaaaactaaaactcaattcgaaaacctaaa 18985377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 22497439 - 22497352
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagact---aaaactcaattcaaaaacctaaa 102  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||   |||||||||||||||||||||||    
T  22497439 accctattattcaaacactaattcttcgtcaacctaccatattatccactccttttaaggctaaaaaaactcaattcaaaaacctaaa 22497352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 26861446 - 26861358
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagact-aaaactcaattcaaaaacctaaactag 106  Q
    |||||||| ||  |||| ||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  26861446 accctatcgttagaacattaattcttcattaacctaccagattatccactctttttaagactaaaaactcaattc-aaaacctaaactag 26861358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 375 - 551
Target Start/End: Original strand, 23212010 - 23212185
Alignment:
Q  375 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 474  Q
    |||||||||||||  |||||||||||| | |||||  ||||||||||  ||| ||| | | |||| |||||||| |||||||| |||| ||||||  |||    
T  23212010 ttctaactcctaacttttctatttatattggggtcggtcacttgttaagattctcttcccctctactcactattcttttactcctcccatccccc-ttta 23212108  T
Q  475 tttgaaacttatattctacacctccgacactattttattttgttttgatgcctctctttatttaaaataaattctcg 551  Q
    ||| |||||||||||||||||| ||||| |||  ||||||| ||||||  |||| ||| |||  || ||||||||||    
T  23212109 tttaaaacttatattctacacccccgactctacgttattttattttgactcctcccttcattataattaaattctcg 23212185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 26861256 - 26861178
Alignment:
Q  203 atcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattctagctttggcttga 281  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| | | | ||||||||||    
T  26861256 atcatggattaagataccctaaagtgcaaagaatctcccccttacctcgaatcctttgaaaaatatggttttggcttga 26861178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 34858423 - 34858332
Alignment:
Q  15 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 106  Q
    ||||||||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  34858423 atcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacctaaactag 34858332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 34873485 - 34873394
Alignment:
Q  15 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 106  Q
    ||||||||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  34873485 atcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacctaaactag 34873394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 29718155 - 29718092
Alignment:
Q  189 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcga 252  Q
    |||||||||||   ||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  29718155 aagacaacccttccatcatagattaagatactctaaagtgcaaatattctcccccttacctcga 29718092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 27473279 - 27473354
Alignment:
Q  17 caccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattc 91  Q
    ||||||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||    
T  27473279 caccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc 27473354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 13361850 - 13361904
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttt 72  Q
    ||||||||||   |||||||||||| | ||||||||||| |||||||||||||||    
T  13361850 accctatcatcgtaacactaattctccattaacctaccagattatccactctttt 13361904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 18784182 - 18784118
Alignment:
Q  204 tcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattct 268  Q
    ||||||| ||| ||||||||| ||| | |||||||||||||||| || | |||||| ||||||||    
T  18784182 tcatagaataaaataccctaacgtgaagagattctcccccttacatcaaatccttcaaaaattct 18784118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 22497234 - 22497195
Alignment:
Q  212 taagataccctaaagtgcaaagattctcccccttacctcga 252  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  22497234 taagataccctaa-gtgcaaagattctcccccttagctcga 22497195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 2e-48; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 203 - 376
Target Start/End: Complemental strand, 10454116 - 10453942
Alignment:
Q  203 atcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattct-agctttggcttgattccgtcgcagctagggttt 301  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||| || | ||||| | ||||||||||||||| ||||||| |||||||||    
T  10454116 atcatagattaagataccctaaagttcaaagattcttccccttacctcgattcttttggaaattttcagctttggcttgatttcgtcgcaactagggttt 10454017  T
Q  302 ctccttttctcctcccctcttctctattttcaacgttcaacaagggtgacccttctaactcctaatgtttctatt 376  Q
    |||||| |||||||| ||||||||  ||||  ||| |||||||  ||||||||||||||||||||||||||||||    
T  10454016 ctccttatctcctcctctcttctccctttttcacggtcaacaaaagtgacccttctaactcctaatgtttctatt 10453942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 375 - 629
Target Start/End: Complemental strand, 26859079 - 26858819
Alignment:
Q  375 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 474  Q
    |||||||||||||  |||||||||||| ||||| |  ||||||||||  ||| ||| ||| |||| |||||||| |||||||| |||||||| |||||||    
T  26859079 ttctaactcctaacctttctatttatatttgggccggtcacttgttaagattctcttctcctctactcactattcttttactcctcccctcctccactta 26858980  T
Q  475 tttgaaacttatattctacacctccgacactattttattttgttttgatgcctctctttatttaaaataaattctcgtactacttatcaatcctcatcaa 574  Q
    ||| |||||||||||||||||| || |  |||  |||||||| ||| |   ||| ||| |||| |  ||||||||| || ||||| |||||| |||||||    
T  26858979 tttaaaacttatattctacacccccaatcctaaattattttg-tttcactactcacttcattttatttaaattctcatattacttctcaatcatcatcaa 26858881  T
Q  575 ta-------ttcttaacaacaaaataacaatcaagctaaagcagcatcaataataatattaa 629  Q
    ||       |||| |||||||||||||   ||||||  ||||| ||||||||||||||||||    
T  26858880 tattctattttctcaacaacaaaataattctcaagcacaagcaacatcaataataatattaa 26858819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 375 - 502
Target Start/End: Complemental strand, 10453964 - 10453848
Alignment:
Q  375 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 474  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||  || ||||           ||||||||| ||||||||||||||    
T  10453964 ttctaactcctaatgtttctatttatatttgggtcagtcacttgttataattttcttttcctcta-----------tttactcataccctcccccactta 10453876  T
Q  475 tttgaaacttatattctacacctccgac 502  Q
    ||| |||||||||| |||||||||||||    
T  10453875 tttaaaacttatatcctacacctccgac 10453848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 15727826 - 15727881
Alignment:
Q  203 atcatagattaagataccctaaagtgcaaagattctcccccttacctcgattcctt 258  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||| |||||    
T  15727826 atcatagattaagataccctaaagtgtaaggattctcccccttacctcgaatcctt 15727881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 10454318 - 10454229
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagact-aaaactcaattcaaaaacctaaactag 106  Q
    |||||||||| ||||||||| |||||| ||||||||||| |||||| | ||| |||| | || ||||||||||||||||||| |||||||    
T  10454318 accctatcatccaaacactacttcttcattaacctaccagattatctattctctttagggctaaaaactcaattcaaaaaccgaaactag 10454229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 22237281 - 22237190
Alignment:
Q  15 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 106  Q
    ||||||||||||||  ||||| |||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  22237281 atcaccctatcattataacaccaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacctaaactag 22237190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 1683100 - 1683182
Alignment:
Q  21 ctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaa-actcaattcaaaaacctaaa 102  Q
    |||||||||||||||||||||||| ||||||||||| ||  || | |||||| ||| ||||| ||||||||| ||||||||||    
T  1683100 ctatcattcaaacactaattcttctttaacctaccagatcgtctaatcttttaaaggctaaacactcaattcgaaaacctaaa 1683182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 19807625 - 19807548
Alignment:
Q  15 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattc 91  Q
    |||||||| |||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||    
T  19807625 atcaccctgtcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc 19807548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 15727628 - 15727699
Alignment:
Q  25 cattcaaacactaattcttcgttaacctaccatattatccactctttttaagact-aaaactcaattcaaaa 95  Q
    |||||||||| || |  ||||||||||||||  |||||||||||||||||||| | ||||||||||||||||    
T  15727628 cattcaaacattagtcattcgttaacctaccggattatccactctttttaagaataaaaactcaattcaaaa 15727699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 499
Target Start/End: Original strand, 15728067 - 15728105
Alignment:
Q  461 ccctcccccacttatttgaaacttatattctacacctcc 499  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  15728067 ccctcccccacttatttaaaacttatattctacacctcc 15728105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 19862151 - 19862229
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaa 95  Q
    |||||| |||||||||| ||||||| ||||||||||||  |||||| |  ||||||||| ||| | |||||||||||||    
T  19862151 accctaacattcaaacattaattctccgttaacctacctaattatctaacctttttaaggctatagactcaattcaaaa 19862229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 19866788 - 19866866
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaa 95  Q
    |||||| |||||||||| ||||||| ||||||||||||  |||||| |  ||||||||| ||| | |||||||||||||    
T  19866788 accctaacattcaaacattaattctccgttaacctacctaattatctaacctttttaaggctatagactcaattcaaaa 19866866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 19862363 - 19862412
Alignment:
Q  215 gataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaa 264  Q
    |||||||||||||| || || ||||||||||||||||| ||||| |||||    
T  19862363 gataccctaaagtgaaaggaatctcccccttacctcgaatcctttgaaaa 19862412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 19867000 - 19867049
Alignment:
Q  215 gataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaa 264  Q
    |||||||||||||| || || ||||||||||||||||| ||||| |||||    
T  19867000 gataccctaaagtgaaaggaatctcccccttacctcgaatcctttgaaaa 19867049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 26859437 - 26859384
Alignment:
Q  19 ccctatcattcaaacactaattcttcgttaacctaccatattatccactctttt 72  Q
    ||||||||||  ||||| |||||||| ||||||||||  |||||||||||||||    
T  26859437 ccctatcattagaacaccaattcttcattaacctacccgattatccactctttt 26859384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 24678513 - 24678453
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagac 78  Q
    |||||||||||| |||||||||||| | ||||||||||  |||||| |  |||||||||||    
T  24678513 accctatcattccaacactaattctccattaacctacctaattatctatcctttttaagac 24678453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 12088 - 11993
Alignment:
Q  11 catcatcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 106  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12088 catcatcaacctataattcaaacactaattcttcgttaacctaccagattatccactctttttaaaactaaaactcaattcaaaaacctaaactag 11993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 508 - 631
Target Start/End: Complemental strand, 11832 - 11702
Alignment:
Q  508 tttattttgttttgatgcctctctttatttaaaataaattctcgtactacttatcaatcctcatcaatattct-------taacaacaaaataacaatca 600  Q
    ||||| |||||||||| |||| ||||||||||  ||||||||| ||||||| |||||||||||||||||||||       |||||||||||||||| |||    
T  11832 tttatcttgttttgattcctcactttatttaatttaaattctcatactactgatcaatcctcatcaatattctatcttcttaacaacaaaataacattca 11733  T
Q  601 agctaaagcagcatcaataataatattaacc 631  Q
    |||||||||||||||||||||||||||||||    
T  11732 agctaaagcagcatcaataataatattaacc 11702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 11890 - 11838
Alignment:
Q  192 acaaccctcatatcatagattaagataccctaaagtgcaaagattctccccct 244  Q
    ||||||||| ||||||| |||| || |||||||||||||||||||||||||||    
T  11890 acaaccctcctatcataaattacgacaccctaaagtgcaaagattctccccct 11838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 375 - 502
Target Start/End: Original strand, 48379123 - 48379250
Alignment:
Q  375 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 474  Q
    |||||||| |||||||||||||||||| ||||||||||||| |||||||| | ||| ||| | ||||||||||  |||||||| ||||||||||||||||    
T  48379123 ttctaacttctaatgtttctatttatacttgggtcaatcacatgttataactttcttctcctttattcactatacttttactcctcccctcccccactta 48379222  T
Q  475 tttgaaacttatattctacacctccgac 502  Q
    ||| ||||||||||||||||||||||||    
T  48379223 tttaaaacttatattctacacctccgac 48379250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 375 - 502
Target Start/End: Complemental strand, 13773730 - 13773603
Alignment:
Q  375 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 474  Q
    |||||||| |||||||||| ||||||| ||||||||||||| |||||||| | ||| ||| | ||||||||||  |||||||| |||||||||||| |||    
T  13773730 ttctaacttctaatgtttccatttatacttgggtcaatcacatgttataactttcttctcctttattcactatacttttactcctcccctcccccattta 13773631  T
Q  475 tttgaaacttatattctacacctccgac 502  Q
    ||| ||||||||||||||||||||||||    
T  13773630 tttaaaacttatattctacacctccgac 13773603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 11800209 - 11800121
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 106  Q
    ||||||||||| ||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||| ||||| || ||||||    
T  11800209 accctatcattgaaacactaattcttctttaacctaccagattatccattctttttaagactaaaactctattaaaaaagcttaactag 11800121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 415 - 628
Target Start/End: Original strand, 2243260 - 2243479
Alignment:
Q  415 cttgttataattgtctgctcttctattcactattattttactcatcccctcccccacttatttgaaacttatattctacacctccgacactattttattt 514  Q
    ||||||| |||| ||| ||| |||| |||||||| |||||||| |||||| ||||||||||||  ||||||||||||| |||  |||| |||| || |||    
T  2243260 cttgttacaattttcttctcctctactcactattcttttactcctccccttccccacttatttagaacttatattctataccctcgactctatatt-ttt 2243358  T
Q  515 tgttttgatgcctctctttatttaaaataaattctcgtactacttatcaatcctcatcaata-------ttcttaacaacaaaataacaatcaagctaaa 607  Q
    | ||||||  |||||||| |||| |  ||||||||| ||||||||  ||||| |||||||||       |||| ||||||||||||||  ||||||  ||    
T  2243359 tattttgaatcctctcttcatttcatttaaattctcatactactttacaatcatcatcaatattctattttctcaacaacaaaataacgttcaagcacaa 2243458  T
Q  608 gcagcatcaataataatatta 628  Q
     || |||||||||||||||||    
T  2243459 acaacatcaataataatatta 2243479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 9693222 - 9693134
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 106  Q
    ||||||||||||||| || |||| ||| ||||||||||| ||||||||||||||| ||| ||||||||||||| |||||| ||||||||    
T  9693222 accctatcattcaaataccaattattcattaacctaccagattatccactcttttaaaggctaaaactcaattaaaaaacttaaactag 9693134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 9693047 - 9692983
Alignment:
Q  189 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgat 253  Q
    ||||||||||||  ||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  9693047 aagacaaccctcccatcatagattaagatactctaaagtgcaaagattctcctccttacctcgat 9692983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 16068116 - 16068058
Alignment:
Q  189 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttac 247  Q
    ||||||||||||   |||||||||||||||||||||| |||||||||||||||||||||    
T  16068116 aagacaaccctcccgtcatagattaagataccctaaattgcaaagattctcccccttac 16068058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 375 - 424
Target Start/End: Complemental strand, 15864998 - 15864949
Alignment:
Q  375 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataa 424  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  15864998 ttctaactcctaatgtttctatttatacttgggtcaatcacatgttataa 15864949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 16379257 - 16379171
Alignment:
Q  21 ctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaa-ctcaattcaaaaacctaaactag 106  Q
    |||||||| ||||||| ||  || ||||||||||   |||| ||||||||||||| ||||||| |||||||||||||||||||||||    
T  16379257 ctatcattaaaacacttatcgtttgttaacctactggattagccactctttttaaaactaaaaactcaattcaaaaacctaaactag 16379171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 11091471 - 11091545
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattc 91  Q
    |||||||||||  |||||||||| ||| | ||||||   |||||||||||||||||||||||| |||||||||||    
T  11091471 accctatcattataacactaattattcatcaacctaatgtattatccactctttttaagactagaaactcaattc 11091545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 15865124 - 15865053
Alignment:
Q  232 agattctcccccttacctcgattccttc-gaaaattctagctttggcttgattccgtcgcagctagggtttct 303  Q
    ||||||||||||||||||||||| |||| |||| ||||||| |||| ||||| |||| ||| |||||||||||    
T  15865124 agattctcccccttacctcgatttcttctgaaatttctagc-ttggtttgatcccgttgcaactagggtttct 15865053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 334 - 376
Target Start/End: Complemental strand, 15865018 - 15864976
Alignment:
Q  334 acgttcaacaagggtgacccttctaactcctaatgtttctatt 376  Q
    |||||||||||  ||||| ||||||||||||||||||||||||    
T  15865018 acgttcaacaaaagtgactcttctaactcctaatgtttctatt 15864976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 577 - 629
Target Start/End: Complemental strand, 13474817 - 13474765
Alignment:
Q  577 ttcttaacaacaaaataacaatcaagctaaagcagcatcaataataatattaa 629  Q
    |||| ||||| ||||||| | ||||||  ||||||||||||||||||||||||    
T  13474817 ttctcaacaataaaataatactcaagcacaagcagcatcaataataatattaa 13474765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 48379008 - 48379071
Alignment:
Q  240 ccccttacctcgattccttc-gaaaattctagctttggcttgattccgtcgcagctagggtttct 303  Q
    ||||||||||||||| |||| |||| ||| ||||| |||||||| |||||||| |||||||||||    
T  48379008 ccccttacctcgatttcttctgaaatttccagctt-ggcttgatcccgtcgcaactagggtttct 48379071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 375 - 501
Target Start/End: Complemental strand, 17959053 - 17958927
Alignment:
Q  375 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 474  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||| | ||| ||| | ||||||||||  |||||||| ||||||||||||||||    
T  17959053 ttctaactcctaatgtttctatttatacttgggtcaatcacatgttataactttcttctcctttattcactatacttttactcctcccctcccccactta 17958954  T
Q  475 tttgaaacttatattctacacctccga 501  Q
    ||| ||||||||||| |||||||||||    
T  17958953 tttaaaacttatattatacacctccga 17958927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 22161611 - 22161699
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 106  Q
    ||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22161611 accctatcattcaaacactaattcttcattaacctacctgattatccactctttttaagactaaaactcaattcaaaaacctaaactag 22161699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 375 - 502
Target Start/End: Complemental strand, 14057572 - 14057445
Alignment:
Q  375 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 474  Q
    ||||||||||||||||||||||||||  ||||||||||||| |||||||| | ||| ||| | ||||||||||  |||||||| ||||||||||||||||    
T  14057572 ttctaactcctaatgtttctatttatgcttgggtcaatcacatgttataaatttcttctcctttattcactatacttttactcctcccctcccccactta 14057473  T
Q  475 tttgaaacttatattctacacctccgac 502  Q
    ||| ||||||||||||||||||| ||||    
T  14057472 tttaaaacttatattctacaccttcgac 14057445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 379 - 502
Target Start/End: Complemental strand, 16932852 - 16932729
Alignment:
Q  379 aactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccacttatttg 478  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||| | | | ||| | ||||||||||  |||||||| |||||||||||||||||||     
T  16932852 aactcctaatgtttctatttatacttgggtcaatcacatgttataacttttttctcctttattcactatacttttactcttcccctcccccacttattta 16932753  T
Q  479 aaacttatattctacacctccgac 502  Q
    ||||||||||||||||||||||||    
T  16932752 aaacttatattctacacctccgac 16932729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 10302610 - 10302694
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaa 102  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||    
T  10302610 accctatcattcaaacactaattcttcgttaacctaccagattatccactcttttaaagactaaaactcaattcaaaaacttaaa 10302694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 21999416 - 21999504
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 106  Q
    ||||| ||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21999416 accctgtcattcaaacactaattcttcattaacctacctgattatccactctttttaagactaaaactcaattcaaaaacctaaactag 21999504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 10340938 - 10341024
Alignment:
Q  20 cctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 106  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  10340938 cctatcattcaaacactaattcttcgttaacctaccggattatccactcttttaaagactaaaactcaattcaaaaacttaaactag 10341024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 21976985 - 21977073
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 106  Q
    ||||| ||||||||||||||||||||| ||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21976985 accctgtcattcaaacactaattcttcattaacctacctgattatccactcttttaaagactaaaactcaattcaaaaacctaaactag 21977073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 27868510 - 27868423
Alignment:
Q  15 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaa 102  Q
    |||| |||||||||||||||  |||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||    
T  27868510 atcaacctatcattcaaacatcaattcttcgttaacctaccagattatccactctttttaaaactaaaactcaattcgaaaacctaaa 27868423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 19186663 - 19186747
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaa 102  Q
    |||||||||||||||||||||||||| |||||||||||  |||| |||||||||| |||||||||||||||||||||||| ||||    
T  19186663 accctatcattcaaacactaattctttgttaacctacctgattacccactcttttcaagactaaaactcaattcaaaaacttaaa 19186747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 375 - 579
Target Start/End: Original strand, 16928759 - 16928963
Alignment:
Q  375 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 474  Q
    |||||| ||||||  |||||||||||| | |||||  ||||||||||  ||| |||  |  |||| ||| |||| |||||||| ||||||||||||||||    
T  16928759 ttctaattcctaacctttctatttatattagggtcggtcacttgttaagattctctttttctctactcattattcttttactcctcccctcccccactta 16928858  T
Q  475 tttgaaacttatattctacacctccgacactattttattttgttttgatgcctctctttatttaaaataaattctcgtactacttatcaatcctcatcaa 574  Q
    | | ||||||||||||||||||  |||| |||| | ||||  |||||||  ||| ||| |||| |  ||||||||| |||||||| | |||| |||||||    
T  16928859 tataaaacttatattctacaccctcgactctatatcatttaattttgatttctcccttcattttatttaaattctcatactacttctaaatcatcatcaa 16928958  T
Q  575 tattc 579  Q
    |||||    
T  16928959 tattc 16928963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 375 - 550
Target Start/End: Complemental strand, 14479397 - 14479222
Alignment:
Q  375 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 474  Q
    ||||||||| |||  |||||||||||| | ||| | | |||||| ||  ||| ||| | | |||| |||||||| |||||||| ||||||||||| ||||    
T  14479397 ttctaactcttaacctttctatttatattagggccgaccacttgctaagattctcttcccctctactcactattcttttactcttcccctcccccgctta 14479298  T
Q  475 tttgaaacttatattctacacctccgacactattttattttgttttgatgcctctctttatttaaaataaattctc 550  Q
    ||| |||||||||||||||||| ||||| |||  ||||||| ||||||  |||| ||| ||| ||| |||||||||    
T  14479297 tttaaaacttatattctacacccccgactctacgttattttattttgactcctcccttcattaaaattaaattctc 14479222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 10302774 - 10302838
Alignment:
Q  189 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgat 253  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  10302774 aagacaaccctcccatcatagattaagataccctaaagtgcaaagattctcccccgtacttcgat 10302838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 52989089 - 52988998
Alignment:
Q  15 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 106  Q
    ||||||||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  52989089 atcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacctaaactag 52988998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 19186851 - 19186900
Alignment:
Q  203 atcatagattaagataccctaaagtgcaaagattctcccccttacctcga 252  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  19186851 atcataaattaagataccctaaagtgcaaagattctcctccttacctcga 19186900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 10341127 - 10341175
Alignment:
Q  205 catagattaagataccctaaagtgcaaagattctcccccttacctcgat 253  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||    
T  10341127 catagattaagataccctaaagtgcaaatattctcccccttacttcgat 10341175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 16358056 - 16357977
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 106  Q
    ||||||||||| |||||||||||||||| |||||||||  ||||||||||         ||||||||||||||||||||||||||||||    
T  16358056 accctatcattgaaacactaattcttcgctaacctacctgattatccact---------actaaaactcaattcaaaaacctaaactag 16357977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 21977160 - 21977220
Alignment:
Q  189 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacct 249  Q
    |||||||||||   |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  21977160 aagacaacccttccatcataaattaagataccctaaagtgcaaagattctaccccttacct 21977220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 21999591 - 21999651
Alignment:
Q  189 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacct 249  Q
    |||||||||||   |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  21999591 aagacaacccttccatcataaattaagataccctaaagtgcaaagattctaccccttacct 21999651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 22161786 - 22161846
Alignment:
Q  189 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacct 249  Q
    |||||||||||   |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  22161786 aagacaacccttccatcataaattaagataccctaaagtgcaaagattctaccccttacct 22161846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 16357864 - 16357816
Alignment:
Q  203 atcatagattaagataccctaaagtgcaaagattctcccccttacctcga 252  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  16357864 atcataaattaagataccctaaagtgcaaagattct-ccccttacctcga 16357816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 21028662 - 21028748
Alignment:
Q  20 cctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaa-actcaattcaaaaacctaaacta 105  Q
    |||||||||| |||||||||| | | ||||||||||  |||||  ||| |||||||| ||| | ||||||||||||| |||||||||    
T  21028662 cctatcattccaacactaattttccattaacctacctgattatatactatttttaaggctatagactcaattcaaaaccctaaacta 21028748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 16928619 - 16928668
Alignment:
Q  203 atcatagattaagataccctaaagtgcaaagattctcccccttacctcga 252  Q
    |||||||||||||||||  ||||||| ||| |||||| ||||||||||||    
T  16928619 atcatagattaagatactttaaagtgaaaatattctctcccttacctcga 16928668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 14479522 - 14479486
Alignment:
Q  230 aaagattctcccccttacctcgattccttcgaaaatt 266  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  14479522 aaagattctcccccttacctcgaatccttcgagaatt 14479486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 17959178 - 17959107
Alignment:
Q  232 agattctcccccttacctcgattccttcgaaaa-ttctagctttggcttgattccgtcgcagctagggtttct 303  Q
    |||||||||||||||||| |||| |||| |||| ||| ||| ||| |||||| |||||||| |||||||||||    
T  17959178 agattctcccccttaccttgatttcttctaaaatttccagc-ttgacttgatcccgtcgcaactagggtttct 17959107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 375 - 499
Target Start/End: Complemental strand, 51624754 - 51624630
Alignment:
Q  375 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 474  Q
    |||||||||||||||||| |||||||| ||||||||||||| |||||||| | ||| ||| | ||||||||||  |||||||| ||||||||||||||||    
T  51624754 ttctaactcctaatgtttatatttatacttgggtcaatcacatgttataactttcttctcctttattcactatacttttactcctcccctcccccactta 51624655  T
Q  475 tttgaaacttatattctacacctcc 499  Q
    ||| |||||||||||||||||||||    
T  51624654 tttaaaacttatattctacacctcc 51624630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 375 - 578
Target Start/End: Original strand, 10390166 - 10390369
Alignment:
Q  375 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 474  Q
    |||||||||||||  ||| |||||||| |  || |  ||||||||||  ||| ||||||| |||| |||||||| |||||||| |||||||||| |||||    
T  10390166 ttctaactcctaacctttgtatttatattaaggccggtcacttgttaagattctctgctcctctactcactattcttttactcctcccctccccaactta 10390265  T
Q  475 tttgaaacttatattctacacctccgacactattttattttgttttgatgcctctctttatttaaaataaattctcgtactacttatcaatcctcatcaa 574  Q
    ||| |||||||||||||||||| ||||| |||| ||||||| ||||||  |||| |||||||| |  ||| ||||| |||||||| |||||| |||||||    
T  10390266 tttaaaacttatattctacacccccgactctatgttattttattttgactcctccctttattttatttaatttctcatactacttctcaatcatcatcaa 10390365  T
Q  575 tatt 578  Q
    ||||    
T  10390366 tatt 10390369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 15544162 - 15544227
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaa 83  Q
    ||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||    
T  15544162 accctatcaatcaaacactaattctttgttaacctaccagattatccactctttttaaggctaaaa 15544227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 17451271 - 17451362
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagact---aaaactcaattcaaaaacctaaactag 106  Q
    ||||||||||||||||||||| |||| |||||||||||| |||||||||| |||||||| ||   ||||||||| | |||||||||||||||    
T  17451271 accctatcattcaaacactaactcttagttaacctaccagattatccactatttttaaggctaaaaaaactcaacttaaaaacctaaactag 17451362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 21496633 - 21496681
Alignment:
Q  205 catagattaagataccctaaagtgcaaagattctcccccttacctcgat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21496633 catagattaagataccctaaagtgcaaagattctcccccttacctcgat 21496681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 21995895 - 21995804
Alignment:
Q  15 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 106  Q
    |||| |||||||||  |||||||||| ||| | |||||||  ||| |||||||||||||||||||| |||||||||||  |||||||||||||    
T  21995895 atcaacctatcattataacactaattattcatcaacctactgtatgatccactctttttaagactagaaactcaattc-gaaacctaaactag 21995804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 461 - 508
Target Start/End: Complemental strand, 24852494 - 24852447
Alignment:
Q  461 ccctcccccacttatttgaaacttatattctacacctccgacactatt 508  Q
    ||||||||||||||||| |||||||||||||||||||| ||| |||||    
T  24852494 ccctcccccacttatttaaaacttatattctacacctctgactctatt 24852447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 17451474 - 17451523
Alignment:
Q  203 atcatagattaagataccctaaagtgcaaagattctcccccttacctcga 252  Q
    |||||| |||||||||||||||||||||||||||||  ||||| ||||||    
T  17451474 atcatatattaagataccctaaagtgcaaagattctatcccttccctcga 17451523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 252
Target Start/End: Original strand, 15545327 - 15545361
Alignment:
Q  218 accctaaagtgcaaagattctcccccttacctcga 252  Q
    ||||||||||||||||||||| |||||||||||||    
T  15545327 accctaaagtgcaaagattctaccccttacctcga 15545361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 43154215 - 43154161
Alignment:
Q  442 cactattattttactcatcccctcccccacttatttgaaacttatattctacacc 496  Q
    ||||||| ||||||||   ||||||||||||||||| |||||||| |||||||||    
T  43154215 cactattcttttactccctccctcccccacttatttaaaacttattttctacacc 43154161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 21496450 - 21496487
Alignment:
Q  46 ttaacctaccatattatccactctttttaagactaaaa 83  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  21496450 ttaacctaccggattatccactctttttaagactaaaa 21496487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 31344038 - 31344127
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 106  Q
    |||||||||||| |||||||||||| | |||||||| |  |||||| | | |||||||| ||| | ||| ||||||||| ||||||||||    
T  31344038 accctatcattccaacactaattctccattaacctatccgattatctaatatttttaaggctatagactaaattcaaaaccctaaactag 31344127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 43154421 - 43154372
Alignment:
Q  216 ataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaat 265  Q
    ||||||||||||  | ||||||||||||||||||||| |||||| |||||    
T  43154421 ataccctaaagttaagagattctcccccttacctcgaatccttcaaaaat 43154372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 461 - 497
Target Start/End: Original strand, 15545554 - 15545590
Alignment:
Q  461 ccctcccccacttatttgaaacttatattctacacct 497  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  15545554 ccctcccccacttatttaaaacttatactctacacct 15545590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 375 - 502
Target Start/End: Original strand, 132913 - 133040
Alignment:
Q  375 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 474  Q
    |||||||| |||||||||||||||||| ||||||||||||| |||||||| | ||| ||| | ||||||||||  |||||||| |||||||| |||||||    
T  132913 ttctaacttctaatgtttctatttatacttgggtcaatcacatgttataactttcttctcctttattcactatacttttactcctcccctccgccactta 133012  T
Q  475 tttgaaacttatattctacacctccgac 502  Q
    ||| ||||||||||||||||||||||||    
T  133013 tttaaaacttatattctacacctccgac 133040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 132790 - 132861
Alignment:
Q  232 agattctcccccttacctcgattccttc-gaaaattctagctttggcttgattccgtcgcagctagggtttct 303  Q
    ||||||||||||||||||||||| |||| |||| ||| ||| |||||||||| ||||| || |||||||||||    
T  132790 agattctcccccttacctcgatttcttctgaaatttccagc-ttggcttgatcccgtcacaactagggtttct 132861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 375 - 501
Target Start/End: Original strand, 31380 - 31506
Alignment:
Q  375 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 474  Q
    |||||||| |||||||||||||||||| ||||||||||||| |||||||| | ||| ||| | |||||| |||  |||||||| ||||||||||||||||    
T  31380 ttctaacttctaatgtttctatttatacttgggtcaatcacatgttataaatttcttctcctttattcaatatacttttactcctcccctcccccactta 31479  T
Q  475 tttgaaacttatattctacacctccga 501  Q
    ||| |||||||||||||||||||||||    
T  31480 tttaaaacttatattctacacctccga 31506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 31256 - 31327
Alignment:
Q  232 agattctcccccttacctcgattccttc-gaaaattctagctttggcttgattccgtcgcagctagggtttct 303  Q
    ||||||||||||||||||||||| |||| |||| ||| ||| |||||||||| |||||| | |||||||||||    
T  31256 agattctcccccttacctcgatttcttctgaaatttccagc-ttggcttgatcccgtcgtaactagggtttct 31327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 375 - 502
Target Start/End: Complemental strand, 25973 - 25846
Alignment:
Q  375 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 474  Q
    |||||||| |||||||||||||||||| |||||||||| || |||||||| | ||| ||| | || |||| ||  |||||||| ||||||||||||||||    
T  25973 ttctaacttctaatgtttctatttatacttgggtcaataacatgttataactttcttctcctttactcaccatacttttactcctcccctcccccactta 25874  T
Q  475 tttgaaacttatattctacacctccgac 502  Q
    ||| ||||||||||||||||||||||||    
T  25873 tttaaaacttatattctacacctccgac 25846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 26085 - 26014
Alignment:
Q  232 agattctcccccttacctcgattccttc-gaaaattctagctttggcttgattccgtcgcagctagggtttct 303  Q
    ||||||||||||||||||||||| |||| |||| ||| ||| |||||||||| |||||||| |||||||||||    
T  26085 agattctcccccttacctcgatttcttctgaaatttccagc-ttggcttgatcccgtcgcaactagggtttct 26014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 16012 - 16100
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 106  Q
    ||||||| ||||||||||||||||||| |||| |||||  |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16012 accctatgattcaaacactaattcttcattaaactacctgattatccactctttttaagactaaaactcaattcaaaaacttaaactag 16100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 16200 - 16263
Alignment:
Q  189 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcga 252  Q
    ||||| ||||||  |||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  16200 aagacgaccctcccatcataaattaagataccctaaagtacaaagattctcccccttacctcga 16263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 11835 - 11924
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagact-aaaactcaattcaaaaacctaaactag 106  Q
    ||||||||||||||||||||||||||||| |||||||   |||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  11835 accctatcattcaaacactaattcttcgtgaacctacttgattatccactctttttaagactaaaaactcaattcaaaaatctaaactag 11924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 12011 - 12060
Alignment:
Q  189 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattct 238  Q
    ||||||||||||  |||||| ||||||||||||||||||||||| |||||    
T  12011 aagacaaccctcccatcataaattaagataccctaaagtgcaaatattct 12060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 375 - 502
Target Start/End: Original strand, 16727 - 16854
Alignment:
Q  375 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 474  Q
    |||||||| ||||||||||||||||||  | |||||||||| |||||||| | ||| ||| | ||||||||||  |||||||| |||| ||| |||||||    
T  16727 ttctaacttctaatgtttctatttatacgttggtcaatcacatgttataactttcttctcctttattcactatacttttactcctcccatcctccactta 16826  T
Q  475 tttgaaacttatattctacacctccgac 502  Q
    ||| ||||||||||||||||||| ||||    
T  16827 tttaaaacttatattctacaccttcgac 16854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 16604 - 16676
Alignment:
Q  232 agattctcccccttacctcgattccttc-gaaaattctagctttggcttgattccgtcgcagctagggtttctc 304  Q
    ||||||||||||||||||||||| |||| |||| ||| ||| |||||||||| |||||||| ||||||||||||    
T  16604 agattctcccccttacctcgatttcttctgaaatttccagc-ttggcttgatcccgtcgcaactagggtttctc 16676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 372 - 522
Target Start/End: Complemental strand, 24829811 - 24829661
Alignment:
Q  372 ctattctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccac 471  Q
    ||||||||| || |||  |||||||||||| | ||| |  ||||||||||  ||| |||  || |||| |||||||| |||||||| |||||||||||||    
T  24829811 ctattctaaatcttaacctttctatttatattagggccggtcacttgttaagattctcttatcctctactcactattcttttactcttcccctcccccac 24829712  T
Q  472 ttatttgaaacttatattctacacctccgacactattttattttgttttga 522  Q
    |||||| |||||||||||||||||| ||||| |||| ||||||| ||||||    
T  24829711 ttatttaaaacttatattctacacccccgactctatgttattttattttga 24829661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 23909047 - 23909135
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 106  Q
    |||||||||| ||||||| ||||||| |||||||||||  |||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  23909047 accctatcatgcaaacacaaattctttgttaacctaccgaattatccacttttttaaagactaaaactcaattcaaaaacttaaactag 23909135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 13938830 - 13938917
Alignment:
Q  21 ctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagact--aaaactcaattcaaaaacctaaactag 106  Q
    |||| |||||||||||||||||| |||||||||||  |||||||| ||||||||||  |  ||||||||||||||| |||||||||||    
T  13938830 ctataattcaaacactaattctttgttaacctaccggattatccattctttttaaggataaaaaactcaattcaaatacctaaactag 13938917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 14137821 - 14137906
Alignment:
Q  22 tatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagact-aaaactcaattcaaaaacctaaactag 106  Q
    |||||| |||||| ||||||||| ||||||||||| |||||| |||||||||| | || |||||||| || |||||||||||||||    
T  14137821 tatcatccaaacagtaattcttcattaacctaccaaattatctactctttttacggctaaaaactcattttaaaaacctaaactag 14137906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 25756355 - 25756303
Alignment:
Q  195 accctcatatcatagattaagataccctaaagtgcaaagattctcccccttac 247  Q
    |||||| | |||||||||||||||||||||||||||||||||||||| |||||    
T  25756355 accctcctgtcatagattaagataccctaaagtgcaaagattctccctcttac 25756303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 14138005 - 14138083
Alignment:
Q  189 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattc 267  Q
    ||||||||||||  |||| | | ||||||||||||||||  | ||||| ||||||||||||||| ||||||||||||||    
T  14138005 aagacaaccctcccatcaaataataagataccctaaagtaaagagattgtcccccttacctcgaatccttcgaaaattc 14138083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 25791883 - 25791941
Alignment:
Q  189 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttac 247  Q
    |||| ||||||| | |||||||||||||||||||||||| ||||||||||||| |||||    
T  25791883 aagaaaaccctcctgtcatagattaagataccctaaagttcaaagattctccctcttac 25791941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 32948866 - 32948927
Alignment:
Q  188 aaagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctc 250  Q
    |||||||||||||  |||| ||||| |||||| ||||||||||||||||||||||||||||||    
T  32948866 aaagacaaccctcccatca-agatttagatactctaaagtgcaaagattctcccccttacctc 32948927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 375 - 496
Target Start/End: Original strand, 13939172 - 13939293
Alignment:
Q  375 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 474  Q
    |||||||||||||   ||||||||||| |||||||  ||||||||||  ||| | | ||| || | |||||||| |||||| | |||| |||||||||||    
T  13939172 ttctaactcctaaccattctatttatatttgggtcggtcacttgttaatattctattctcctcgactcactattcttttacccctcccttcccccactta 13939271  T
Q  475 tttgaaacttatattctacacc 496  Q
    ||  ||||||||||| ||||||    
T  13939272 ttgaaaacttatattatacacc 13939293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 396 - 521
Target Start/End: Original strand, 14138192 - 14138315
Alignment:
Q  396 tttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccacttatttgaaacttatattctacac 495  Q
    |||||| || ||||||||||||||||  ||| ||| ||| |||| || ||||| ||||||||   |||||||| |||||||| |||||||||||||||||    
T  14138192 tttatatttaggtcaatcacttgttaagattatcttctcctctactcgctattcttttactccaaccctcccc-acttatttaaaacttatattctacac 14138290  T
Q  496 ctccgacactattttattttgttttg 521  Q
    | | ||| |||| ||||||| |||||    
T  14138291 c-ctgactctatattattttattttg 14138315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 25581374 - 25581329
Alignment:
Q  203 atcatagattaagataccctaaagtgcaaagattctcccccttacct 249  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||    
T  25581374 atcatagat-aagataccctaaagtggaaagattctcccccttacct 25581329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 13939029 - 13939078
Alignment:
Q  203 atcatagattaagataccctaaagtgcaaagattctcccccttacctcga 252  Q
    |||||| |||||||||| |||||||||||||||||| || ||||||||||    
T  13939029 atcatatattaagatacactaaagtgcaaagattcttcctcttacctcga 13939078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 25791694 - 25791782
Alignment:
Q  20 cctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagact-aaaactcaatt-caaaaacctaaactag 106  Q
    ||||||||||||||||||||  |  ||||||||||   ||||| |||||||||||||||| |||||||||||  ||||| |||||||||    
T  25791694 cctatcattcaaacactaatcataggttaacctactggattattcactctttttaagactaaaaactcaattagaaaaaactaaactag 25791782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 442 - 498
Target Start/End: Complemental strand, 23949861 - 23949805
Alignment:
Q  442 cactattattttactcatcccctcccccacttatttgaaacttatattctacacctc 498  Q
    ||||||| |||||||||  | |||||| |||| ||| ||||||||||||||||||||    
T  23949861 cactattcttttactcaatcactcccctacttgtttaaaacttatattctacacctc 23949805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 24564977 - 24565025
Alignment:
Q  204 tcatagattaagataccctaaagtgcaaagattctcccccttacctcga 252  Q
    ||||| ||||||| ||||||||||||||||||| | ||| |||||||||    
T  24564977 tcatatattaagagaccctaaagtgcaaagatttttcccattacctcga 24565025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 25581565 - 25581498
Alignment:
Q  31 aacactaattcttcgttaacctaccatattatccactctttttaagact--aaaactcaattcaaaaa 96  Q
    ||||||||||||| ||||||||||   ||||||||||||||||| |  |  |||||||||||||||||    
T  25581565 aacactaattctttgttaacctactggattatccactctttttatggttaaaaaactcaattcaaaaa 25581498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 14617 - 14682
Alignment:
Q  188 aaagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgat 253  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14617 aaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctcccccttacctcgat 14682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 11707 - 11801
Alignment:
Q  12 atcatcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 106  Q
    ||||| |||||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  11707 atcattaccctatcattataacactaatttttcatcaacctactgtattatccactctttttaagactagaaactcaattc-aaaacctaaactag 11801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 797 - 737
Alignment:
Q  188 aaagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacct 249  Q
    |||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||    
T  797 aaagacaaccctccaatcatagattaagataccctaaagtgcaaag-ttctcccccttacct 737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 68118 - 68208
Alignment:
Q  15 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaacta 105  Q
    ||||||||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||  ||||||||||||    
T  68118 atcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacctaaacta 68208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 5121 - 5199
Alignment:
Q  15 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattca 92  Q
    ||||||||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| ||||||||||||    
T  5121 atcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattca 5199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 12141 - 12219
Alignment:
Q  15 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattca 92  Q
    ||||||||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| ||||||||||||    
T  12141 atcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattca 12219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 1263 - 1351
Alignment:
Q  18 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 106  Q
    |||||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  1263 accctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacctaaactag 1351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 1759 - 1850
Alignment:
Q  15 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 106  Q
    |||| |||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  1759 atcaacctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacctaaactag 1850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 15055 - 15098
Alignment:
Q  204 tcatagattaagataccctaaagtgcaaagattctcccccttac 247  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  15055 tcatagattaagataccctatagtgcaaagattctcccccttac 15098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 14860 - 14946
Alignment:
Q  20 cctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 106  Q
    ||||||||| ||||||||||  || |||||||||||  ||| | ||||||||| |||||||||| |||||| ||||| | |||||||    
T  14860 cctatcattaaaacactaatcatttgttaacctaccgaattgttcactcttttcaagactaaaattcaattaaaaaaacaaaactag 14946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 574 - 516
Alignment:
Q  189 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttac 247  Q
    ||||||||||||  ||||||||||||||||| ||| | |||||||||||||||||||||    
T  574 aagacaaccctctcatcatagattaagatactctacattgcaaagattctcccccttac 516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 13458 - 13547
Alignment:
Q  15 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaact 104  Q
    ||||||||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| ||| |||||||  |||||||||||    
T  13458 atcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaattcaattc-gaaacctaaact 13547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 11738 - 11659
Alignment:
Q  30 aaacactaattcttcgttaacctaccatattatccactctttttaagact---aaaactcaattcaaaaacctaaactag 106  Q
    |||||||||||||| |||||| ||||  ||||||||||| ||||||| ||   |||||||||||||||||| ||||||||    
T  11738 aaacactaattctttgttaacttaccggattatccactcattttaaggctaaaaaaactcaattcaaaaacataaactag 11659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 11553 - 11515
Alignment:
Q  204 tcatagattaagataccctaaagtgcaaagattctcccc 242  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  11553 tcatatattaagataccctaaagtgcaaagattctcccc 11515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 35520 - 35443
Alignment:
Q  203 atcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattctagctttggcttga 281  Q
    |||||||||||| |||||||||||||  | || ||||||||||||||||| ||||| ||||| ||| | ||||||||||    
T  35520 atcatagattaa-ataccctaaagtggtaggaatctcccccttacctcgaatcctttgaaaaatctggttttggcttga 35443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 522
Target Start/End: Original strand, 54490 - 54631
Alignment:
Q  380 actcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccacttatttga 479  Q
    ||||||||  |||||||||||| | ||||   ||||||||||  ||  ||| | |||||| |||||||| |||||||| |||||| ||| ||||| || |    
T  54490 actcctaacctttctatttatattagggttggtcacttgttaagatactcttcccttctactcactattcttttactcttcccctgcccaacttaattaa 54589  T
Q  480 aacttatattctacacctccgacactattttattttgttttga 522  Q
    ||  ||||||||||||| ||||| |||| ||||||| ||||||    
T  54590 aatatatattctacacc-ccgactctatgttattttattttga 54631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 143158 - 143216
Alignment:
Q  189 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttac 247  Q
    ||||||||| ||  |||||||||||||||||| ||||||| |||||||| |||||||||    
T  143158 aagacaaccttcccatcatagattaagataccataaagtgaaaagattcacccccttac 143216  T

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Target: scaffold0670 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0670
Description:

Target: scaffold0670; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 6503 - 6581
Alignment:
Q  202 tatcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattctagctttggcttga 281  Q
    ||||||||||||| | |||||||||||  | || ||||||||||||||||| ||||| ||||| ||| | ||||||||||    
T  6503 tatcatagattaa-acaccctaaagtggtaggaatctcccccttacctcgaatcctttgaaaaatctggttttggcttga 6581  T

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Target: scaffold0035 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 15438 - 15389
Alignment:
Q  215 gataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaa 264  Q
    |||||||||||||| || || ||||||||||||||||| ||||| |||||    
T  15438 gataccctaaagtgaaaggaatctcccccttacctcgaatcctttgaaaa 15389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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