View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17910_low_2 (Length: 526)
Name: NF17910_low_2
Description: NF17910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17910_low_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 7 - 526
Target Start/End: Original strand, 5954376 - 5954895
Alignment:
| Q |
7 |
actacagcagcaaccaaagagataatagcccaagggttattgaagtaattgtgtctcaagcttgcacaccaagtattccatctatgattgtagtatctat |
106 |
Q |
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| T |
5954376 |
actacagcagcaaccaaagagataatagcccaagggttattgaagtaattgtgtctcaagcttgcacaccaagtattccatctatgattgtagtatctat |
5954475 |
T |
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| Q |
107 |
taacagactctgataatggagaaaggtaactgttattgatgtcaaacacaacctcttggcataacctgttgaaaaggtctgcaacttcggtatcacttcc |
206 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5954476 |
taacagactctgataatggagaaagataactgttattgatgtcaaacacaacctcttggcataacctgttgaaaaggtctgcaacttcggtatcacttcc |
5954575 |
T |
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| Q |
207 |
aagccaatgttcgattatccctcggtaatgaaggtatccgacatcttctggagagttaatcaagttatccatgaagataacataggatgtaatgtcatta |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5954576 |
aagccaatgttcgattatccctcggtaatgaaggtatccgacatcttctggagagttaatcaagttatccatgaagataacataggatgtaatgtcattg |
5954675 |
T |
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| Q |
307 |
ctgcaatcaagatgacactgctcaaatgcaatgaggtttagaaacagagattttgttccatcatggatcaagagtctcggaatacgcagaataccgtcct |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5954676 |
ctgcaatcaagatgacactgctcaaatgcaatgaggtttagaaacagagattttgttccatcatggatcaagagtctcggaatacgcagaataccgtcct |
5954775 |
T |
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| Q |
407 |
taaatttaatatcccagaagcgatcggtcttccttttcttgaacttgattccagcctcttttagctcagttacacaatgtatcagttgctggcgccgttt |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5954776 |
taaatttaatatcccagaagcgatcggtcttccttttcttgaacttgattccagcctcttttagctcagttacacaatgtatcagttgctggcgccgttt |
5954875 |
T |
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| Q |
507 |
gtctgcaactctattagcgt |
526 |
Q |
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| T |
5954876 |
gtctgcaactctattagcgt |
5954895 |
T |
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