View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17911_high_10 (Length: 368)

Name: NF17911_high_10
Description: NF17911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17911_high_10
NF17911_high_10
[»] chr7 (11 HSPs)
chr7 (14-368)||(39179390-39179744)
chr7 (127-297)||(39192098-39192272)
chr7 (127-256)||(39221002-39221131)
chr7 (29-166)||(39218222-39218359)
chr7 (29-166)||(39225320-39225457)
chr7 (22-158)||(39196643-39196779)
chr7 (23-129)||(39240965-39241071)
chr7 (27-124)||(39258399-39258496)
chr7 (31-130)||(39247903-39248002)
chr7 (31-130)||(39300212-39300311)
chr7 (14-57)||(39220964-39221007)


Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 39179390 - 39179744
Alignment:
Q  14 agcaaagggcttcattttacctactataaaggagcaagctttccatcttccagtctttgatcttaaaatgggtctaccttttaggtctactgttccatct 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39179390 agcaaagggcttcattttacctactataaaggagcaagctttccatcttccagtctttgatcttaaaatgggtctaccttttaggtctactgttccatcc 39179489  T
Q  114 tgagtgtaatcttctttcccgtttgctgaccctttttcttcaaccatttccatcatgatgctggacaagaaaaactatttggtcacttgtttggggatca 213  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39179490 tgagtgtaatcttctttcccgtttgctgagcctttttcttcaaccatttccatcatgatgctggacaagaaaaactatttggtcacttgtttggggatca 39179589  T
Q  214 agcaaggttattagtttttctcacgagcttttgatgtatttaaggacaaggaaactgattttagaagcttagttttcactaccttatgttttaaactgac 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39179590 agcaaggttattagtttttctcacgagcttttgatgtatttaaggacaaggaaactgattttagaagcttagttttcactaccttatgttttaaactgac 39179689  T
Q  314 cattttacatttagctaacaaacaaaaatatgtcgaaaacgaaaaggaatcggcc 368  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39179690 cattttacatttagctaacaaacaaaaatatgtcgaaaacaaaaaggaatcggcc 39179744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 127 - 297
Target Start/End: Original strand, 39192098 - 39192272
Alignment:
Q  127 ctttcccgtttgctgaccctttttcttcaaccatttccatcatgatgctggacaagaaaaactatttggtcacttgtttggggatcaagcaaggttatta 226  Q
    ||||||| | |||||  ||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||    
T  39192098 ctttcccctctgctgggcctttttcttctaccattgccatcatgatgctggacaagaaaaactacttggtcacttgtttggcgatcaagcaaggttacta 39192197  T
Q  227 gtttttctcacgagcttttgatgtattt----aaggacaaggaaactgattttagaagcttagttttcactacct 297  Q
    | |||||||| |||||||||||||||||    ||||| ||||||||||||||||||||||||||| |||||||||    
T  39192198 ggttttctcatgagcttttgatgtatttaatcaaggaaaaggaaactgattttagaagcttagttatcactacct 39192272  T

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Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 127 - 256
Target Start/End: Original strand, 39221002 - 39221131
Alignment:
Q  127 ctttcccgtttgctgaccctttttcttcaaccatttccatcatgatgctggacaagaaaaactatttggtcacttgtttggggatcaagcaaggttatta 226  Q
    ||||||| |||||||| ||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||    
T  39221002 ctttcccttttgctgagcctttttcttctaccattgccatcatgatgctggacaagaaaaactacttggtcacttgtgtggggatcaagcaaggttacta 39221101  T
Q  227 gtttttctcacgagcttttgatgtatttaa 256  Q
    |||||||||| |||||||||||||||||||    
T  39221102 gtttttctcatgagcttttgatgtatttaa 39221131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 39218222 - 39218359
Alignment:
Q  29 tttacctactataaaggagcaagctttccatcttccagtctttgatcttaaaatgggtctaccttttaggtctactgttccatcttgagtgtaatcttct 128  Q
    |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||    
T  39218222 tttacctactatgaaggagcaagctttccatcgtccagtcttcgatcttaaaacaggtctaccttttaggtctactgtaccatcttgagtgtaatcttct 39218321  T
Q  129 ttcccgtttgctgaccctttttcttcaaccatttccat 166  Q
    ||||| ||||| |  |||||||||||||||| ||||||    
T  39218322 ttcccatttgcagggcctttttcttcaaccacttccat 39218359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 39225320 - 39225457
Alignment:
Q  29 tttacctactataaaggagcaagctttccatcttccagtctttgatcttaaaatgggtctaccttttaggtctactgttccatcttgagtgtaatcttct 128  Q
    |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||    
T  39225320 tttacctactatgaaggagcaagctttccatcgtccagtcttcgatcttaaaacaggtctaccttttaggtctactgtaccatcttgagtgtaatcttct 39225419  T
Q  129 ttcccgtttgctgaccctttttcttcaaccatttccat 166  Q
    ||||| ||||| |  |||||||||||||||| ||||||    
T  39225420 ttcccatttgcagggcctttttcttcaaccacttccat 39225457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 39196643 - 39196779
Alignment:
Q  22 gcttcattttacctactataaaggagcaagctttccatcttccagtctttgatcttaaaatgggtctaccttttaggtctactgttccatcttgagtgta 121  Q
    |||||| |||||||||||| ||||||||||||||||||| |||||| |||||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  39196643 gcttcactttacctactatgaaggagcaagctttccatcgtccagtttttgatcttaaaacaggtctaccttttaggtctactgtaccatcttgagtgta 39196742  T
Q  122 atcttctttcccgtttgctgaccctttttcttcaacc 158  Q
    ||||||||||||  ||||    |||||||||||||||    
T  39196743 atcttctttcccacttgcatggcctttttcttcaacc 39196779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 39240965 - 39241071
Alignment:
Q  23 cttcattttacctactataaaggagcaagctttccatcttccagtctttgatcttaaaatgggtctaccttttaggtctactgttccatcttgagtgtaa 122  Q
    ||||| ||||||||| |  ||||| |||||||||||| |||||||||||||||||||||  ||||| |||| ||  ||||||||||||||||||||||||    
T  39240965 cttcaatttacctacaaggaaggaacaagctttccatgttccagtctttgatcttaaaactggtctgccttgtaaatctactgttccatcttgagtgtaa 39241064  T
Q  123 tcttctt 129  Q
    |||||||    
T  39241065 tcttctt 39241071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 39258399 - 39258496
Alignment:
Q  27 attttacctactataaaggagcaagctttccatcttccagtctttgatcttaaaatgggtctaccttttaggtctactgttccatcttgagtgtaatc 124  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||  ||| |||||| |||   |||||| |||||||| ||||||||    
T  39258399 attttacctactataaaagagcaagctttccatcttccggtctttgatcttaaaaccggtttaccttgtagacttactgtgccatcttgcgtgtaatc 39258496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 39247903 - 39248002
Alignment:
Q  31 tacctactataaaggagcaagctttccatcttccagtctttgatcttaaaatgggtctaccttttaggtctactgttccatcttgagtgtaatcttcttt 130  Q
    |||||||||| ||||| |||||| |||||||||| || |||||||||||||  ||||||||||| ||||| ||||| ||||||| ||| |||||||||||    
T  39247903 tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataatcttcttt 39248002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 39300212 - 39300311
Alignment:
Q  31 tacctactataaaggagcaagctttccatcttccagtctttgatcttaaaatgggtctaccttttaggtctactgttccatcttgagtgtaatcttcttt 130  Q
    |||||||||| ||||| |||||| |||||||||| || |||||||||||||  ||||||||||| ||||| ||||| ||||||| ||| |||||||||||    
T  39300212 tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataatcttcttt 39300311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 39220964 - 39221007
Alignment:
Q  14 agcaaagggcttcattttacctactataaaggagcaagctttcc 57  Q
    |||||| |||||||||||||||||||||||| ||||||||||||    
T  39220964 agcaaaaggcttcattttacctactataaagaagcaagctttcc 39221007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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