View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17911_high_12 (Length: 325)
Name: NF17911_high_12
Description: NF17911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17911_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 228741 - 228435
Alignment:
| Q |
1 |
ggagagagggggtccccctgcctcacccctctcttgcaatggaaataaccctcttgaccgccattaatattgattgaaagagttgcagagttaagaatca |
100 |
Q |
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| T |
228741 |
ggagagagggggtccccctgcctcacccctctcttgcaatggaaataaccctattgactgccattaatattgattgaaagagttgcagagttaagaatca |
228642 |
T |
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| Q |
101 |
cctctatccatttgcaaaaaatttcattaaaaccaaaacacttgagaactgaaagaagaaagctccaatcaagggtatcaaatgctttagagatattaat |
200 |
Q |
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| T |
228641 |
cctctatccatttgcaaaaaatttcattaaaaccaagacacttgagaactgaaagaagaaagctccaatcaagggtatcaaatgctttagagatatcaat |
228542 |
T |
|
| Q |
201 |
ctttaaagccaggttcccccaaatgctttcttatgaagaagatttgcagcttctgatgctaagcagatgcaatccttaatgttacttccttgtattaaac |
300 |
Q |
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| T |
228541 |
ctttaaagccaggttcccccaaatgctttcttatgaagaagatttgcagcttctgatgctaaacagatgcaatccttaatgttacttccttgtattaaac |
228442 |
T |
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| Q |
301 |
ccctctg |
307 |
Q |
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||||||| |
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| T |
228441 |
ccctctg |
228435 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 28337449 - 28337486
Alignment:
| Q |
106 |
atccatttgcaaaaaatttcattaaaaccaaaacactt |
143 |
Q |
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| T |
28337449 |
atccatttgcaaaaaatatcattaaaaccaaaacactt |
28337486 |
T |
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