View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17911_high_21 (Length: 207)
Name: NF17911_high_21
Description: NF17911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17911_high_21 |
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| [»] scaffold0590 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 10548512 - 10548381
Alignment:
| Q |
1 |
ggaaacatgatggaaaaaggctttgatgaaacaataggtttaatttgtgttagattagatggtgggatttgagtattttagttagacatgtgtg--tgta |
98 |
Q |
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| T |
10548512 |
ggaaacatgatggaaaaaggctttgatgaaacaatagctttaatttgtgttagattagatggtgggatttgagtattttagttagacatgtgtgtatata |
10548413 |
T |
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| Q |
99 |
tatgtaatggtactaaaatggatataaggaaa |
130 |
Q |
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| T |
10548412 |
tatgtaatggtactaaaatggatataaggaaa |
10548381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 10548308 - 10548241
Alignment:
| Q |
128 |
aaaatgagagaagaggttagaagaagaatgttgacaacacacatattccatgcttatttcctttgctt |
195 |
Q |
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| T |
10548308 |
aaaatgagagaagaggttagaagaagaatgttgacatcacacatattccatacttatttccttggctt |
10548241 |
T |
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Target: scaffold0590 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0590
Description:
Target: scaffold0590; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 4983 - 5050
Alignment:
| Q |
128 |
aaaatgagagaagaggttagaagaagaatgttgacaacacacatattccatgcttatttcctttgctt |
195 |
Q |
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| T |
4983 |
aaaatgagagaagaggttagaagaagaatgttgacatcacacatatttcatgcttatttccttggctt |
5050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 27368917 - 27368865
Alignment:
| Q |
128 |
aaaatgagagaagaggttagaagaagaatgttgacaacacacatattccatgc |
180 |
Q |
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| T |
27368917 |
aaaatgagagaagtggttagaagaagaatgttgacatcacacatattccatgc |
27368865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 27459264 - 27459212
Alignment:
| Q |
128 |
aaaatgagagaagaggttagaagaagaatgttgacaacacacatattccatgc |
180 |
Q |
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| T |
27459264 |
aaaatgagagaagtggttagaagaagaatgttgacatcacacatattccatgc |
27459212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 8332606 - 8332561
Alignment:
| Q |
128 |
aaaatgagagaagaggttagaagaagaatgttgacaacacacatat |
173 |
Q |
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| T |
8332606 |
aaaatgagagaagcggttaggagaagaatattgacatcacacatat |
8332561 |
T |
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