View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17911_high_8 (Length: 395)
Name: NF17911_high_8
Description: NF17911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17911_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 340
Target Start/End: Complemental strand, 21117287 - 21116962
Alignment:
| Q |
15 |
caaaggatttggggattgaacccatcaagaagtggtttgtttccattttaacaaattaatattggttcctcaaatcaatactagtattgattgctataat |
114 |
Q |
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| T |
21117287 |
caaaggatttggggattgaacccatcaagaagtggtttgtttccattttaacaaattaatatttgttcctcgaatcaatactagtattgattgctataat |
21117188 |
T |
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| Q |
115 |
caaaatgtggtcaggcatggacactggactcgacactattagtgacattagtattggttgctcaaatcacaaatcacaaattaaccaatcaagtatctat |
214 |
Q |
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| T |
21117187 |
caaaatgtggtcagacatggacactggactcgacactatcaatgacattagtattggttgctcaaatcacaaatcacaaattaaccaatcaagtatctat |
21117088 |
T |
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| Q |
215 |
atatacataaaatgctaaatcgttaaatctatttattagcaaggtaatggaatgaatccatgttcacattctagcattctccgttgattaagcactcaat |
314 |
Q |
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| T |
21117087 |
atatacataaaatgcgaaatcgttaaatctatttattagcaaggtaatggaatgaatccatgttcacattctagcattctccgttgattaagcactcaat |
21116988 |
T |
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| Q |
315 |
cacgtcgataaattctcgattcacta |
340 |
Q |
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| T |
21116987 |
catgtcgataaattctcgactcacta |
21116962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 21137088 - 21136990
Alignment:
| Q |
54 |
tttccattttaacaaattaatattggttcctcaaatcaatactagtattgattgctataatcaaaatgtggtcaggcatggacactggactcgacacta |
152 |
Q |
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| T |
21137088 |
tttcctttttaacaaactagtaatggttgctctaatcagtagtaatattgattgctcaaataaaaaaatggtcagacatggacattggactcgacacta |
21136990 |
T |
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