View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17911_low_1 (Length: 853)
Name: NF17911_low_1
Description: NF17911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17911_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 303 - 837
Target Start/End: Original strand, 34980759 - 34981287
Alignment:
| Q |
303 |
aaaatctcacattacgatgacaattgcaacgtgatttttcttttatctttctctatctgatgtatttttatttggatatgaattagaatcaatggtcgac |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34980759 |
aaaatctcacattacgatgacaattgcaacgtgatttttcttttatctttctctatctgatgtatttttatttggatatgaattagaatcaatggtcgac |
34980858 |
T |
|
| Q |
403 |
ggaattttacaacattgtcccaagagcaagaattctaggaagcttttcagatggagtagaaggaagctaggatnnnnnnnnntgcatgcggtaagttcta |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
34980859 |
ggaattttacaacattgtcccaagagcaagaattctaggaagcttttcagatggagtagaaggaagctaggataaaacaaa-tgcatgtggtaagttcta |
34980957 |
T |
|
| Q |
503 |
taatatatatgttattaatttttctttaagaactttgttaacaagaaaattgagaaaacaaagaatatcatcaagttactttatgatatgatattgatag |
602 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34980958 |
taatat----gttattaatttttctttaagaactttgttaacaagaaaattgagaaaacaaagaatatcatcaagttactttatgatatgatactgatag |
34981053 |
T |
|
| Q |
603 |
taatttataccatgaactaatgcattgcaatcgatgagatttttctccaacagttctatgacttttctgacttgtttgaataatatatatttggaagata |
702 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34981054 |
taatttataccatgaactaatgctttgcaatcgatgagatttttctccaacagttctatgacttttctgacttgtttgaataatatatatttggaagata |
34981153 |
T |
|
| Q |
703 |
tcttctctattatacttagcatttaattctgtgagaaaagtgggagttttttcttactaaaaacgtgggattgtttgtggatgaactaatcatatcatga |
802 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34981154 |
tcttctctattatactcagcatttaattctgtgagaaaagtgggagttttttcttactaaaaacgtgggattgtttgtggatgaactaatcatatca-ga |
34981252 |
T |
|
| Q |
803 |
tatattgtgtcaaaagattattttgaaggattatg |
837 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
34981253 |
tatattgtgtcaaaagattattttgaaggattatg |
34981287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 34980465 - 34980721
Alignment:
| Q |
11 |
cataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34980465 |
cataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatc |
34980564 |
T |
|
| Q |
111 |
ttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacat |
210 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34980565 |
ttgaaactatacctagttttgatttgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggacaaggttttccgattgaagcttctcgggacat |
34980664 |
T |
|
| Q |
211 |
ggaattgattaagataagaccaactaaactagttgaattacttatggatgtggcaag |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34980665 |
ggaattgattaagataagaccaactaaactagttgaattacttatggatgtggcaag |
34980721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 34992867 - 34993115
Alignment:
| Q |
11 |
cataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatc |
110 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| |
|
|
| T |
34992867 |
cataggtacgaaattctcgataatattgaatatttgaaacaatttagtcaggttgatgcatcattaatggagcttgttaagatggttgaagttggagatc |
34992966 |
T |
|
| Q |
111 |
ttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacat |
210 |
Q |
| |
|
|| |||| | |||||||||||||||||||||| ||| ||||||||||||||||||| |||||||| |||||||| | |||||||| ||| ||||| || |
|
|
| T |
34992967 |
ttcaaacactgcctagttttgattcgtgtcgaatccaagatccaatgtcaacaaaggacgtttttggacaaggtttgcagattgaaggttcacgggatat |
34993066 |
T |
|
| Q |
211 |
ggaattgattaagataagaccaactaaactagttgaattacttatggat |
259 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
34993067 |
ggcattgattaagataagtccaactaaactagttgaagtacttatggat |
34993115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 11 - 263
Target Start/End: Original strand, 34984912 - 34985164
Alignment:
| Q |
11 |
cataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatc |
110 |
Q |
| |
|
||||||||||||||||| ||| || |||||||||||||||||||| | ||||||||| | ||| | | ||||||||| |||||||||||||||| | |
|
|
| T |
34984912 |
cataggtacgaaattctcgatgattttgaatatttgaaacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagc |
34985011 |
T |
|
| Q |
111 |
ttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacat |
210 |
Q |
| |
|
|| ||||| ||||||||||||||| ||||||||| |||||| |||||| |||| ||||||||||| |||||||| | |||||||||||||||||||| |
|
|
| T |
34985012 |
ttcaaactttacctagttttgatttgtgtcgaaaccaaaattcaatgtatacaatggaagtttttgaacaaggtttgcagattgaagcttctcgggacaa |
34985111 |
T |
|
| Q |
211 |
ggaattgattaagataagaccaactaaactagttgaattacttatggatgtgg |
263 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34985112 |
ggcattgattaagataagtccaactaaactagttgaattacttatggatgtgg |
34985164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 27542736 - 27542482
Alignment:
| Q |
11 |
cataggtacgaaattcttgat--tatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggaga |
108 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| |||||||||||| | ||| |||||||||| | ||||| | ||| || | |||||||||||||||| |
|
|
| T |
27542736 |
cataggtacgaaattctcgatgatatattgaaaatttgaaacaatatggtcgggttgatgcaacattaatggagattaataggttggttgaagttggaga |
27542637 |
T |
|
| Q |
109 |
tcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggac |
208 |
Q |
| |
|
|| ||||| ||||||||||||||| ||||||||| ||||||||||||| |||| | |||||||||| |||||||| | ||||||||||| |||| || |
|
|
| T |
27542636 |
attttaaactttacctagttttgatttgtgtcgaaaccaaaatccaatgtacacaatgaaagtttttggacaaggtttgcagattgaagcttttcggaac |
27542537 |
T |
|
| Q |
209 |
atggaattgattaagataagaccaactaaactagttgaattacttatggatgtgg |
263 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
27542536 |
atggcattgattaagataagtccaactaaactagttgaaatacttatggatgtgg |
27542482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 27581624 - 27581375
Alignment:
| Q |
12 |
ataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatct |
111 |
Q |
| |
|
|||||||| ||||||| || ||||||||||||||||||||||| ||| |||||||||| | ||||| | ||| ||| | |||||||||||||||| || |
|
|
| T |
27581624 |
ataggtacaaaattctccatgatattgaatatttgaaacaatttggtcgggttgatgcaacattaatggagattattaggttggttgaagttggagagct |
27581525 |
T |
|
| Q |
112 |
tgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacatg |
211 |
Q |
| |
|
| ||||| ||||||||||||||| ||| ||||||||||||||||| |||| |||||||| ||| |||||||| ||||||||| || |||||||| |
|
|
| T |
27581524 |
tcaaactttacctagttttgatttgtga--aaatcaaaatccaatgtacacaatggaagtttctggacaaggtttatagattgaagcctcgtgggacatg |
27581427 |
T |
|
| Q |
212 |
gaattgattaagataagaccaactaaactagttgaattacttatggatgtgg |
263 |
Q |
| |
|
| |||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27581426 |
gcattggttaagataattccaactaaactagttgaattacttatggatgtgg |
27581375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 11 - 263
Target Start/End: Original strand, 27582979 - 27583233
Alignment:
| Q |
11 |
cataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatc |
110 |
Q |
| |
|
|||| |||||||||||| ||| ||||| ||||||||||||||||| ||| |||||||||| | | ||| | ||||||| | |||||| ||||||||| | |
|
|
| T |
27582979 |
cataagtacgaaattctcgataatatttaatatttgaaacaatttggtcgggttgatgcaacatcaatggagattgttaggttggttggagttggagagc |
27583078 |
T |
|
| Q |
111 |
ttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacat |
210 |
Q |
| |
|
|| ||||| ||||||||||| ||| ||||||||| ||||||||||||| |||| |||| ||||||| |||||||| ||||||||||||||| ||||| |
|
|
| T |
27583079 |
ttcaaactttacctagttttaatttgtgtcgaaaccaaaatccaatgtacacaatggaaatttttggacaaggtttgttgattgaagcttctcgagacat |
27583178 |
T |
|
| Q |
211 |
ggaa--ttgattaagataagaccaactaaactagttgaattacttatggatgtgg |
263 |
Q |
| |
|
|| | |||||||| ||| | |||||||||||| |||||||||||||||||||| |
|
|
| T |
27583179 |
ggcatgttgattaatatatgttcaactaaactagatgaattacttatggatgtgg |
27583233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 27543655 - 27543854
Alignment:
| Q |
11 |
cataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatc |
110 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||| | ||||| | ||||||| | || ||| ||||||||| | |
|
|
| T |
27543655 |
cataggtacgaaattctcgatgatattgaatatttgaaacaatttggttgggttgatgcaacattaatggagattgttaggttgcttggagttggagagc |
27543754 |
T |
|
| Q |
111 |
ttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacat |
210 |
Q |
| |
|
|| ||||| ||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||| || ||||| | |||||||||||||| |||||| |
|
|
| T |
27543755 |
ttcaaactttacctagttttgatttgtgtcgaaaccaaaatccaatgtacacaatggaagtttttggacatggtttgcagattgaagcttctcaggacat |
27543854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 346 - 445
Target Start/End: Original strand, 34985426 - 34985525
Alignment:
| Q |
346 |
tatctttctctatctgatgtatttttatttggatatgaattagaatcaatggtcgacggaattttacaacattgtcccaagagcaagaattctaggaagc |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||| |||||||||||| |
|
|
| T |
34985426 |
tatctttctctatctgatgtatttttatttggatatgaattagaatcaatggtcgacggcattttacaacattgtctcaggagcaaggattctaggaagc |
34985525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 346 - 471
Target Start/End: Original strand, 34993399 - 34993524
Alignment:
| Q |
346 |
tatctttctctatctgatgtatttttatttggatatgaattagaatcaatggtcgacggaattttacaacattgtcccaagagcaagaattctaggaagc |
445 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| ||||||||||||| |||| |||| ||||||||||| |||||||| || ||||| | |
|
|
| T |
34993399 |
tatctttctctatctgatgtattattatttgaccatgaactagaatcaatggtgtacggcatttcacaacattgtctcaagagcagagataataggattc |
34993498 |
T |
|
| Q |
446 |
ttttcagatggagtagaaggaagcta |
471 |
Q |
| |
|
||| ||||||||||||| |||||||| |
|
|
| T |
34993499 |
tttacagatggagtagatggaagcta |
34993524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 485 - 568
Target Start/End: Original strand, 34985551 - 34985630
Alignment:
| Q |
485 |
tgcatgcggtaagttctataatatatatgttattaatttttctttaagaactttgttaacaagaaaattgagaaaacaaagaat |
568 |
Q |
| |
|
|||||| ||||||||||||||||| | |||||||||| ||||||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
34985551 |
tgcatgtggtaagttctataatat----gctattaattttcctttaagaaatttgttaataaagaaattgagaaaacaaagaat |
34985630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 27543859 - 27543892
Alignment:
| Q |
230 |
ccaactaaactagttgaattacttatggatgtgg |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
27543859 |
ccaactaaactagttgaattacttatggatgtgg |
27543892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University