View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17911_low_14 (Length: 313)
Name: NF17911_low_14
Description: NF17911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17911_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 28691569 - 28691830
Alignment:
| Q |
19 |
tgtataagattatagacatgtatagcttgtacgctcccatgtgtttcagcaatatcagcaacgtcagaagggaagcccctcattcttctttttccaaatt |
118 |
Q |
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| T |
28691569 |
tgtataagattatagacatgtatagcttgtacgctcccatgtgtttcagcaatatcagcaacgtcagaag---------tcattctt---tttccaaatt |
28691656 |
T |
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| Q |
119 |
ggtactggtgagttaattcatcaatttagaacttaaaaactagtacacgtatactacagcaactaaagttacttgcctattgaaattgtcgattttaata |
218 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
28691657 |
ggtactggtgagtt---tcatcaatttagaacttaaaaactagtacac------tactgcaactaacgttacttgcctattgaaattgtcaattttaata |
28691747 |
T |
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| Q |
219 |
ggacgggtggcataaaaatctagcaggatatgatccatgtgcatcagattatactgcagcatacctaaataggccacaggttc |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28691748 |
ggacgggtggcataaaaatctagcaggatatgatccatgtgcatcagattatactgcagcatacctaaataggccagaggttc |
28691830 |
T |
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