View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17911_low_18 (Length: 263)
Name: NF17911_low_18
Description: NF17911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17911_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 6722939 - 6722711
Alignment:
| Q |
11 |
cagagagaaactaagatatgatcactaaattaacaaaaacaaatatgtatgtttcaaaatcatgttgtccagtctctttcaagattttgaaatcaaaagt |
110 |
Q |
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| T |
6722939 |
cagagagaaaccaagatatgatcactaaattaacaaaaacaaatatgtatgtttcaaaatcatgtttttcagtctctttcaagattttgaaatcaaaagt |
6722840 |
T |
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| Q |
111 |
accaatttttcagagagaaaccaagagtacgaagagtgaattagatgattagatgattacgaagagtgagaacagtgaatgaaatcaaaaataacaattt |
210 |
Q |
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| T |
6722839 |
accaatttttcagagagaaaccaagagtacgaagagtga--------atgagatgattacgaagagtgggaatagtgaatgaaatcaaaaataacaattt |
6722748 |
T |
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| Q |
211 |
tatacaggcaaagaaacatgcattgtttcaatgtttc |
247 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
6722747 |
tatataggcaaagaaacatgcattgtttcaatgtttc |
6722711 |
T |
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