View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17911_low_19 (Length: 238)
Name: NF17911_low_19
Description: NF17911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17911_low_19 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: scaffold0200 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 30799 - 31003
Alignment:
| Q |
16 |
ataatactttgagaaatagaagaaattaaatataatgtatttgtgttgcgccggtgtccgacaccgacacatgtcaaacactatactcatatttaatcta |
115 |
Q |
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| T |
30799 |
ataatattttgagaaatagaagaaattaaatataatgtatttgtgtcgtgccggtgtccgacaccgacacatgtcaaacactatactcatatttaatcta |
30898 |
T |
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| Q |
116 |
aagtgtcagtgctacataatataaataccaagaaaaatttaaatgtgaaaaatcaatctattcatacctttagtaaattggcaatataagtttgtggtgg |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30899 |
aagtgtcagtgctacataatataaatactaagaaaaatttaaatgtgaaaaatcaatctattcatacctttagtaaattggcaatataagtttgtggtgg |
30998 |
T |
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| Q |
216 |
gttaa |
220 |
Q |
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||||| |
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| T |
30999 |
gttaa |
31003 |
T |
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