View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17911_low_2 (Length: 572)

Name: NF17911_low_2
Description: NF17911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17911_low_2
NF17911_low_2
[»] chr2 (32 HSPs)
chr2 (12-570)||(4800595-4801148)
chr2 (162-288)||(34460367-34460493)
chr2 (162-287)||(11708677-11708802)
chr2 (162-286)||(26605624-26605748)
chr2 (162-287)||(10639610-10639735)
chr2 (162-286)||(23839859-23839983)
chr2 (162-286)||(33083558-33083682)
chr2 (162-274)||(37197614-37197726)
chr2 (162-289)||(19816217-19816344)
chr2 (162-292)||(11459709-11459839)
chr2 (162-286)||(34234530-34234652)
chr2 (162-287)||(45125169-45125294)
chr2 (162-292)||(19537301-19537431)
chr2 (162-287)||(29659222-29659347)
chr2 (162-287)||(11816554-11816680)
chr2 (162-289)||(38440201-38440328)
chr2 (162-287)||(39535538-39535663)
chr2 (162-286)||(19048754-19048878)
chr2 (162-286)||(27137922-27138045)
chr2 (465-507)||(4800584-4800626)
chr2 (164-289)||(4851317-4851442)
chr2 (162-271)||(33001718-33001826)
chr2 (162-282)||(42025674-42025795)
chr2 (162-286)||(39831448-39831571)
chr2 (162-282)||(43684073-43684193)
chr2 (227-282)||(25501852-25501907)
chr2 (243-286)||(42578180-42578223)
chr2 (162-287)||(7275890-7276016)
chr2 (185-286)||(40786236-40786337)
chr2 (235-283)||(32844654-32844702)
chr2 (188-289)||(16654360-16654461)
chr2 (162-271)||(43778472-43778581)
[»] chr8 (33 HSPs)
chr8 (162-287)||(32333113-32333238)
chr8 (162-288)||(1344-1470)
chr8 (162-288)||(28817254-28817380)
chr8 (162-286)||(35779501-35779625)
chr8 (162-287)||(42192643-42192768)
chr8 (162-286)||(70527-70651)
chr8 (162-286)||(6602522-6602646)
chr8 (162-286)||(6677975-6678099)
chr8 (162-286)||(7792661-7792785)
chr8 (162-286)||(7813322-7813446)
chr8 (162-287)||(4530986-4531111)
chr8 (162-289)||(39303306-39303434)
chr8 (162-287)||(3822395-3822520)
chr8 (162-286)||(1078652-1078776)
chr8 (162-286)||(9292018-9292142)
chr8 (162-286)||(40911221-40911344)
chr8 (162-286)||(10963246-10963368)
chr8 (162-286)||(12534724-12534846)
chr8 (162-255)||(31532129-31532222)
chr8 (162-264)||(42885196-42885298)
chr8 (165-262)||(5385362-5385459)
chr8 (162-287)||(45264644-45264768)
chr8 (162-286)||(39435282-39435406)
chr8 (243-289)||(18386705-18386751)
chr8 (162-287)||(29425356-29425475)
chr8 (162-288)||(31695273-31695399)
chr8 (215-288)||(6099570-6099643)
chr8 (162-270)||(41849236-41849343)
chr8 (244-287)||(22979603-22979646)
chr8 (162-203)||(9775046-9775087)
chr8 (230-274)||(20269554-20269598)
chr8 (230-274)||(21056183-21056227)
chr8 (162-286)||(31969724-31969848)
[»] chr5 (24 HSPs)
chr5 (162-286)||(12257356-12257480)
chr5 (162-286)||(13203957-13204081)
chr5 (162-285)||(4824943-4825066)
chr5 (162-287)||(35317701-35317826)
chr5 (162-286)||(21018223-21018347)
chr5 (157-288)||(1191539-1191670)
chr5 (167-287)||(27721430-27721550)
chr5 (162-288)||(40177622-40177748)
chr5 (162-287)||(11124651-11124776)
chr5 (185-286)||(9576988-9577089)
chr5 (228-292)||(32143472-32143536)
chr5 (162-283)||(6020995-6021116)
chr5 (162-282)||(8734000-8734121)
chr5 (231-287)||(38955227-38955283)
chr5 (162-261)||(23262573-23262668)
chr5 (162-287)||(2970983-2971108)
chr5 (162-259)||(31909389-31909486)
chr5 (235-287)||(3386977-3387029)
chr5 (162-286)||(29265875-29265999)
chr5 (235-286)||(17465091-17465142)
chr5 (245-288)||(35545931-35545974)
chr5 (228-286)||(30127894-30127952)
chr5 (238-282)||(4444928-4444972)
chr5 (162-286)||(21112049-21112173)
[»] chr3 (26 HSPs)
chr3 (162-286)||(43247654-43247778)
chr3 (162-292)||(29689486-29689616)
chr3 (162-290)||(7824458-7824586)
chr3 (165-290)||(33334604-33334729)
chr3 (162-286)||(51665929-51666053)
chr3 (162-286)||(54151685-54151809)
chr3 (162-286)||(54158266-54158390)
chr3 (162-287)||(28844503-28844629)
chr3 (164-289)||(55018040-55018165)
chr3 (162-274)||(3112999-3113111)
chr3 (162-286)||(4601425-4601549)
chr3 (162-274)||(36228998-36229110)
chr3 (162-286)||(1778851-1778975)
chr3 (188-286)||(35461509-35461607)
chr3 (162-270)||(9349680-9349788)
chr3 (162-286)||(42392809-42392933)
chr3 (228-286)||(29750621-29750679)
chr3 (162-288)||(43775221-43775347)
chr3 (162-252)||(47635009-47635099)
chr3 (162-286)||(50729524-50729648)
chr3 (162-286)||(50783201-50783325)
chr3 (162-255)||(38257307-38257400)
chr3 (235-282)||(51112541-51112588)
chr3 (162-287)||(28458662-28458786)
chr3 (238-282)||(14868935-14868979)
chr3 (228-288)||(45686097-45686157)
[»] chr1 (23 HSPs)
chr1 (162-286)||(28455874-28455998)
chr1 (164-288)||(41761417-41761541)
chr1 (165-275)||(39276361-39276471)
chr1 (162-288)||(48660020-48660146)
chr1 (162-286)||(32007074-32007198)
chr1 (162-285)||(35945798-35945921)
chr1 (162-286)||(5055792-5055916)
chr1 (162-286)||(41808202-41808326)
chr1 (162-285)||(5943682-5943805)
chr1 (185-287)||(46447404-46447506)
chr1 (162-287)||(45813015-45813140)
chr1 (162-286)||(192415-192539)
chr1 (162-286)||(20748-20872)
chr1 (207-283)||(29587255-29587331)
chr1 (162-286)||(29994387-29994511)
chr1 (206-274)||(47111469-47111537)
chr1 (162-286)||(13109770-13109894)
chr1 (161-287)||(50106199-50106325)
chr1 (244-288)||(45294656-45294700)
chr1 (162-284)||(21938944-21939066)
chr1 (228-286)||(25931219-25931277)
chr1 (230-287)||(4065960-4066017)
chr1 (163-199)||(25931162-25931198)
[»] chr7 (38 HSPs)
chr7 (162-287)||(44083939-44084064)
chr7 (162-288)||(2146634-2146760)
chr7 (162-289)||(31770536-31770663)
chr7 (162-288)||(23358183-23358309)
chr7 (162-286)||(4106738-4106862)
chr7 (162-286)||(40058238-40058362)
chr7 (162-285)||(47250255-47250378)
chr7 (162-288)||(25112251-25112377)
chr7 (162-287)||(25546279-25546404)
chr7 (162-288)||(8439076-8439202)
chr7 (162-282)||(43753757-43753878)
chr7 (162-286)||(11355823-11355947)
chr7 (165-275)||(29484762-29484872)
chr7 (162-264)||(41183837-41183939)
chr7 (162-271)||(4107324-4107433)
chr7 (162-286)||(7162794-7162916)
chr7 (165-286)||(29255717-29255836)
chr7 (165-280)||(27229484-27229600)
chr7 (163-255)||(39513988-39514080)
chr7 (162-276)||(5587290-5587404)
chr7 (162-276)||(5592251-5592365)
chr7 (162-287)||(27915584-27915710)
chr7 (161-287)||(38033728-38033854)
chr7 (162-288)||(48444156-48444282)
chr7 (162-271)||(28603026-28603135)
chr7 (165-286)||(5772826-5772947)
chr7 (228-288)||(32606400-32606460)
chr7 (162-257)||(47570722-47570817)
chr7 (162-285)||(48146754-48146877)
chr7 (165-286)||(43203306-43203427)
chr7 (162-286)||(47557781-47557905)
chr7 (162-197)||(23036209-23036244)
chr7 (165-287)||(25049965-25050087)
chr7 (228-286)||(34763454-34763512)
chr7 (178-288)||(47960975-47961085)
chr7 (162-199)||(4001848-4001885)
chr7 (162-254)||(38781212-38781304)
chr7 (235-287)||(43171016-43171068)
[»] chr4 (28 HSPs)
chr4 (162-287)||(1173950-1174075)
chr4 (162-286)||(43139910-43140034)
chr4 (162-286)||(19849507-19849631)
chr4 (162-286)||(34739280-34739404)
chr4 (162-286)||(45874055-45874179)
chr4 (164-287)||(238464-238587)
chr4 (162-288)||(28798392-28798518)
chr4 (162-287)||(12735430-12735555)
chr4 (162-286)||(26424862-26424985)
chr4 (162-286)||(54768436-54768560)
chr4 (165-292)||(19673936-19674063)
chr4 (162-289)||(53457821-53457948)
chr4 (162-287)||(12867840-12867965)
chr4 (161-292)||(19814099-19814230)
chr4 (162-287)||(18257328-18257453)
chr4 (162-275)||(23417487-23417600)
chr4 (162-286)||(2864752-2864876)
chr4 (163-283)||(22607988-22608108)
chr4 (159-286)||(23710334-23710461)
chr4 (162-291)||(29581048-29581176)
chr4 (162-287)||(11277981-11278102)
chr4 (162-286)||(55214652-55214776)
chr4 (162-285)||(516460-516583)
chr4 (167-261)||(39807869-39807963)
chr4 (162-284)||(19225261-19225383)
chr4 (242-286)||(32441168-32441212)
chr4 (230-283)||(3465755-3465808)
chr4 (162-283)||(52768305-52768425)
[»] scaffold0044 (1 HSPs)
scaffold0044 (162-286)||(9977-10101)
[»] scaffold0032 (1 HSPs)
scaffold0032 (162-286)||(56481-56605)
[»] chr6 (18 HSPs)
chr6 (162-288)||(33621492-33621618)
chr6 (165-286)||(33704216-33704337)
chr6 (162-286)||(21037291-21037414)
chr6 (163-286)||(21000692-21000815)
chr6 (162-286)||(4464127-4464251)
chr6 (165-286)||(12252023-12252144)
chr6 (162-286)||(28322932-28323056)
chr6 (228-286)||(35218698-35218756)
chr6 (228-288)||(28592186-28592246)
chr6 (162-287)||(361010-361135)
chr6 (162-263)||(19145494-19145594)
chr6 (163-287)||(2959148-2959272)
chr6 (162-261)||(16518448-16518545)
chr6 (162-286)||(24619083-24619207)
chr6 (207-286)||(33255489-33255567)
chr6 (230-286)||(3057402-3057458)
chr6 (244-288)||(14939146-14939190)
chr6 (188-286)||(11572008-11572106)
[»] scaffold1348 (1 HSPs)
scaffold1348 (162-286)||(866-990)
[»] scaffold0119 (2 HSPs)
scaffold0119 (162-286)||(13955-14079)
scaffold0119 (162-286)||(19635-19759)
[»] scaffold0067 (1 HSPs)
scaffold0067 (162-282)||(34822-34943)
[»] scaffold0352 (1 HSPs)
scaffold0352 (162-286)||(8947-9071)
[»] scaffold0053 (1 HSPs)
scaffold0053 (162-275)||(22174-22287)
[»] scaffold0038 (1 HSPs)
scaffold0038 (162-286)||(114252-114376)


Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 12 - 570
Target Start/End: Complemental strand, 4801148 - 4800595
Alignment:
Q  12 atttttggcctaaggtatctcattcaatggaggcttttgaaatgtataagcatctttgaagcacatttacctgttggtggatatctttcaaataaatgtt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  4801148 atttttggcctaaggtatctcattcaatggaggcttttgaaatgtataagcatctttgaagcacatttacccgttggtggatatctttcaaataaatatt 4801049  T
Q  112 ctccgcaaagaatttggaaatgtacacaatttgcgcnnnnnnnnattttatagatgaagtggtaatccattggaattaaactcacacataaccacgaggt 211  Q
    |||||||||||||||||||||||||| ||||||||          |||| |||||||||||||||| || ||||||||||||||||||||||| ||||||    
T  4801048 ctccgcaaagaatttggaaatgtacataatttgcgtttttttt--ttttttagatgaagtggtaattcactggaattaaactcacacataaccgcgaggt 4800951  T
Q  212 cctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctagacaattaaggttttacgtttttgcccg 311  Q
     | |||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4800950 tccgggttcgaactcaggtcacgacgtccagccttgcaatttcgacatttgccggttgagctagaacttctaaacaattaaggttttacgtttttgcccg 4800851  T
Q  312 atttatttggatgtgaaattaaattttaagaggaaannnnnnnnnnnnnnnnnnaccttgatgtggattaaaaaccaagagataaacaactagatctttt 411  Q
    ||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||    
T  4800850 atttatttggatgtgaaattaaattttaagaggaaaatatatatattttttt--accttgatgtggattaaaaaccaagagataaacaactagatctttt 4800753  T
Q  412 accaaaatatttgtttgaacaattttttgcttaacaatcttctttaaatgcatctcaaaatagttgtggagcctgaagacctttgatatgcatagtgtgt 511  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4800752 accaaaatatttgtttgaacaattttttgct-aacaatcttctttaaatgcatctcaaaatagttgtggagactgaagacctttgatatgcatagtgtgt 4800654  T
Q  512 gttcaaatctgcaatacccttcttctactcaaaatagttgtggagactgaagacctttg 570  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4800653 gttcaaatctgcaatacccttcttctactcaaaatagttgtggagactgaagacctttg 4800595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 34460493 - 34460367
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||| |||||||| ||| | ||||||||||||| ||||||||||||||||||||    
T  34460493 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggttctgggttcgaacccgggtcacaacgtccggccttgcaatttcggcattt 34460394  T
Q  262 gccggttgagctagaacttctagacaa 288  Q
    | | |||||||||| ||||||||||||    
T  34460393 gtcagttgagctaggacttctagacaa 34460367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 11708802 - 11708677
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || ||||| |||||| |||   |||||||||||||| ||| | ||||||||||||| ||||| ||||||||||||||    
T  11708802 tagatgaagtggtaatccactgaaaataaacccacacacaactgtgaggtcctgggttcgaacccgggtcacaacgtccggccttacaatttcggcattt 11708703  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    ||| |||||||||| |||||||||||    
T  11708702 gccagttgagctaggacttctagaca 11708677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 26605748 - 26605624
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||| ||||||| |||   ||||||| |||||| ||| | ||||||||||||| ||||||||||||||||||||    
T  26605748 tagatgaagtggtaatccactgaaaataaattcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggcattt 26605649  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  26605648 gccagttgagctaggacttctagac 26605624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 10639610 - 10639735
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | |||||  |||||| ||||||||||||||||||||    
T  10639610 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcattt 10639709  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    ||| |||||||||| |||||||||||    
T  10639710 gccagttgagctaggacttctagaca 10639735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 23839983 - 23839859
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   |||||||  ||||| ||| ||||||||||||||| |||||||||||| |||||||    
T  23839983 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccaggttcgaacccaggtcacaacgtccggccttgcaattttggcattt 23839884  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||| ||| ||||||||||    
T  23839883 gccagttgagttaggacttctagac 23839859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 33083558 - 33083682
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | |||||  |||||| ||||||||||||||||||||    
T  33083558 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcattt 33083657  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  33083658 gccagttgagctaggacttctagac 33083682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 162 - 274
Target Start/End: Original strand, 37197614 - 37197726
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | |||||| |||||||||||||||||||||||||||    
T  37197614 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacgacgtccagccttgcaatttcggcattt 37197713  T
Q  262 gccggttgagcta 274  Q
    ||| |||||||||    
T  37197714 gccagttgagcta 37197726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 162 - 289
Target Start/End: Complemental strand, 19816344 - 19816217
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    |||||||||| |||||| | || || |||||||| ||| |||  |||||| | |||||||||| | ||||||||||||| ||||||||||||||| ||||    
T  19816344 tagatgaagttgtaatctactgaaaataaactcatacacaactgcgaggttccgggttcaaacccgggtcacaacgtccggccttgcaatttcggtattt 19816245  T
Q  262 gccggttgagctagaacttctagacaat 289  Q
    ||| |||||||||| |||||||||||||    
T  19816244 gccagttgagctaggacttctagacaat 19816217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 162 - 292
Target Start/End: Complemental strand, 11459839 - 11459709
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    |||||||||||||||||||||| || ||||| |||||| |||   ||||||| |||||| ||| | |||||  ||||||  |||||||||||||||||||    
T  11459839 tagatgaagtggtaatccattgaaaataaacacacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccgaccttgcaatttcggcattt 11459740  T
Q  262 gccggttgagctagaacttctagacaattaa 292  Q
    ||| |||||||||| ||||||||||| ||||    
T  11459739 gccagttgagctaggacttctagacacttaa 11459709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 34234652 - 34234530
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||| ||| | || |||||||||||||||  || | ||||||  |||||||||||||| ||||||| |||  |||||||||||||||||||    
T  34234652 tagatgaagtggtgatctactgaaattaaactcacaca--actatgaggtctcgggttcaaactcagatcacaacatccgaccttgcaatttcggcattt 34234555  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  34234554 gccagttgagctaggacttctagac 34234530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 45125169 - 45125294
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||| | | |||| ||| || |||||||||||| ||||| ||||||||||||||    
T  45125169 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggttccgagttcgaacccaagtcacaacgtccggccttacaatttcggcattt 45125268  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    ||| |||||||||| |||||||||||    
T  45125269 gccagttgagctaggacttctagaca 45125294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 162 - 292
Target Start/End: Complemental strand, 19537431 - 19537301
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || ||||| |||||| |||   ||||| | |||||| ||| | | ||||||||||| ||||||||||||||||||||    
T  19537431 tagatgaagtggtaatccactgaaaataaacacacacacaactgtgaggttccgggttcgaacccggatcacaacgtccggccttgcaatttcggcattt 19537332  T
Q  262 gccggttgagctagaacttctagacaattaa 292  Q
    ||| ||||| |||| ||||||||||| ||||    
T  19537331 gccagttgaactaggacttctagacagttaa 19537301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 29659222 - 29659347
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   |||||| ||||||| ||| | |||||||| || | ||||| |||||| |||||||    
T  29659222 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcatgggttcgaacccgggtcacaatgttcggccttacaattttggcattt 29659321  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    ||| |||||||||| |||||||||||    
T  29659322 gccagttgagctaggacttctagaca 29659347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 11816554 - 11816680
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaa-ctcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatt 260  Q
    ||||||||||||||||||| || ||||||| |||||| | |||   ||||| | |||||| ||| |||||||| ||||||  ||||||||||||||||||    
T  11816554 tagatgaagtggtaatccactgaaattaaaactcacatacaactgtgaggttccgggttcgaacccaggtcacgacgtccgaccttgcaatttcggcatt 11816653  T
Q  261 tgccggttgagctagaacttctagaca 287  Q
    |||| |||||||||| |||||| ||||    
T  11816654 tgccagttgagctaggacttctggaca 11816680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 162 - 289
Target Start/End: Original strand, 38440201 - 38440328
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| |  ||||||||||||||||| | | ||||||   |||||  |  | |||||| |||||| ||||||||||||||||||||    
T  38440201 tagatgaagtggtaatccactaaaattaaactcacacatagctaggaggtctcaggttcggatccgggtcacgacgtccggccttgcaatttcggcattt 38440300  T
Q  262 gccggttgagctagaacttctagacaat 289  Q
    | | |||||||| ||||||||| |||||    
T  38440301 gtcagttgagctggaacttctaaacaat 38440328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 39535538 - 39535663
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||  |  ||||||||||||| | |||   ||||||| |||||| ||| | |||||| |||||| |||||||||||||| |||||    
T  39535538 tagatgaagtggtaatccgctcaaattaaactcacataaaactgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaatttcgacattt 39535637  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    ||  |||||| ||| |||||||||||    
T  39535638 gctagttgagttaggacttctagaca 39535663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 19048878 - 19048754
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||| ||| || || |||||||||||| ||    ||||||| |||||| ||| | | |||  |||||| ||||| ||||||||||||||    
T  19048878 tagatgaagtggtaaaccactgaaactaaactcacacacaattgtgaggtcccgggttcgaacccggatcatgacgtccggccttacaatttcggcattt 19048779  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  19048778 gccagttgagctaggacttctagac 19048754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 27137922 - 27138045
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || ||||||||||||| | |||    |||||| |||||| ||| |||||||| | || | ||||| ||||||| ||||||    
T  27137922 tagatgaagtggtaatccactgaaattaaactcacataaaactgtaaggtcccgggttcgaacccaggtcacgatgttcggcctt-caatttcagcattt 27138020  T
Q  262 gccggttgagctagaacttctagac 286  Q
    | | |||||||||| ||||||||||    
T  27138021 gtcagttgagctaggacttctagac 27138045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 465 - 507
Target Start/End: Complemental strand, 4800626 - 4800584
Alignment:
Q  465 ctcaaaatagttgtggagcctgaagacctttgatatgcatagt 507  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  4800626 ctcaaaatagttgtggagactgaagacctttgatatgcatagt 4800584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 289
Target Start/End: Complemental strand, 4851442 - 4851317
Alignment:
Q  164 gatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgc 263  Q
    ||||||||||||||||| |  ||||||||||||||| |||   ||||||| |||||  ||| | | |||| |||||| || || ||||||||||| |||     
T  4851442 gatgaagtggtaatccactaaaattaaactcacacacaactgtgaggtcccgggtttgaacccggatcacgacgtccggctttacaatttcggcaattga 4851343  T
Q  264 cggttgagctagaacttctagacaat 289  Q
    | |||||||||| ||||| |||||||    
T  4851342 cagttgagctaggacttcaagacaat 4851317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 33001826 - 33001718
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    |||||||| |||||||||| || ||||||||||||| |||||   ||||||||| |||| ||| || |||||||||| ||| ||| |||||||  |||||    
T  33001826 tagatgaaatggtaatccactgaaattaaactcacatataactgtgaggtcctgtgttcgaaccca-gtcacaacgttcagtcttacaatttcaacattt 33001728  T
Q  262 gccggttgag 271  Q
    ||| ||||||    
T  33001727 gccagttgag 33001718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 42025795 - 42025674
Alignment:
Q  162 tagatgaagtggtaatccattggaattaa-actcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatt 260  Q
    |||||||||||||| |||| || |||||| ||||||||| ||    ||||| |||||||| |||||||||||| || ||| |||||  ||||||| ||||    
T  42025795 tagatgaagtggtagtccactgaaattaagactcacacacaattgtgaggttctgggttcgaactcaggtcacgacatccggccttaaaatttcgacatt 42025696  T
Q  261 tgccggttgagctagaacttct 282  Q
    || | |||||||||| ||||||    
T  42025695 tgtcagttgagctaggacttct 42025674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 39831448 - 39831571
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||| ||| || ||||||||||||||| ||    ||||||| || ||| ||| | | |||  |||||| ||||||||||||||| ||||    
T  39831448 tagatgaagtggtaaaccactgaaattaaactcacacacaattgtgaggtcccgg-ttcgaacccggatcatgacgtccggccttgcaatttcggtattt 39831546  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| |||| |||||    
T  39831547 gccagttgagctaggacttatagac 39831571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 43684193 - 43684073
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||||||    | ||||| |||||| ||| || ||||    |||| ||||||||||||||||||||    
T  43684193 tagatgaagtggtaatccagtgaaaataaactcacacataattgtggggtcccgggttcgaacccatgtcatggtgtccggccttgcaatttcggcattt 43684094  T
Q  262 gccggttgagctagaacttct 282  Q
    | | |||||| ||| ||||||    
T  43684093 gtcagttgagataggacttct 43684073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 25501852 - 25501907
Alignment:
Q  227 aggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttct 282  Q
    ||||||| |||||| ||||||||||||| ||||||||| |||||||||| ||||||    
T  25501852 aggtcacgacgtccggccttgcaatttcagcatttgccagttgagctaggacttct 25501907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 42578223 - 42578180
Alignment:
Q  243 ccttgcaatttcggcatttgccggttgagctagaacttctagac 286  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  42578223 ccttgcaatttcggcatttgccagttgagctaggacttctagac 42578180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 7275890 - 7276016
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggca-tt 260  Q
    |||||||||||||||||||||  ||||||| | ||||| |||   ||||||| |||||| ||| | || ||| || |||  |||||||||||||||| ||    
T  7275890 tagatgaagtggtaatccattaaaattaaatttacacacaactgtgaggtcccgggttcgaacccgggccacgacatccgaccttgcaatttcggcattt 7275989  T
Q  261 tgccggttgagctagaacttctagaca 287  Q
    || | |||||| ||| |||||||||||    
T  7275990 tgtcagttgagttaggacttctagaca 7276016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 40786236 - 40786337
Alignment:
Q  185 aattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctag 284  Q
    ||||||||||||||  |||  ||||||| | ||||| |||   |||||| |||||| ||||||||||||||||||||| | |||||| ||  ||||||||    
T  40786236 aattaaactcacactcaactgcgaggtcttaggttcgaaccagggtcacgacgtccggccttgcaatttcggcatttgtcagttgagttatgacttctag 40786335  T
Q  285 ac 286  Q
    ||    
T  40786336 ac 40786337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 32844654 - 32844702
Alignment:
Q  235 acgtccagccttgcaatttcggcatttgccggttgagctagaacttcta 283  Q
    |||||| ||||||||||||||||||||||| ||||| ||| ||||||||    
T  32844654 acgtccggccttgcaatttcggcatttgccagttgaactaaaacttcta 32844702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 289
Target Start/End: Complemental strand, 16654461 - 16654360
Alignment:
Q  188 taaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctagaca 287  Q
    |||||||||||| |||   ||||| | |||||| ||||| | ||||  ||||| ||||||||||||||||||||  | |||||| ||| ||||||| |||    
T  16654461 taaactcacacacaactgtgaggttccgggttcgaactcggatcacggcgtccggccttgcaatttcggcatttatcagttgagttaggacttctaaaca 16654362  T
Q  288 at 289  Q
    ||    
T  16654361 at 16654360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 271
Target Start/End: Original strand, 43778472 - 43778581
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   || ||| | ||||| ||| |||||||| || | | || |||||||||||| ||||    
T  43778472 tagatgaagtggtaatccaatgaaaataaactcacacacaactgtgaagtcttaggttcgaacccaggtcacgacattcggctttgcaatttcggtattt 43778571  T
Q  262 gccggttgag 271  Q
    | | ||||||    
T  43778572 gtcagttgag 43778581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 32333238 - 32333113
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | ||||||||||||| ||||||||||||||||||||    
T  32333238 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggcattt 32333139  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    ||| |||||||||| |||||||||||    
T  32333138 gccagttgagctaggacttctagaca 32333113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 162 - 288
Target Start/End: Original strand, 1344 - 1470
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| |||   ||||||||||||| |||||||||||| |||||||    
T  1344 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaaccagggtcacaacgtccggccttgcaattttggcattt 1443  T
Q  262 gccggttgagctagaacttctagacaa 288  Q
    ||| |||||||||||||||||||||||    
T  1444 gccagttgagctagaacttctagacaa 1470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 28817380 - 28817254
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||| ||| |||||| ||| | ||||||||||||| ||||||||||||||||||||    
T  28817380 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggcattt 28817281  T
Q  262 gccggttgagctagaacttctagacaa 288  Q
    ||| |||||||||| ||||||||||||    
T  28817280 gccagttgagctaggacttctagacaa 28817254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 35779501 - 35779625
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | ||||||||||||| |||||||||||| |||||||    
T  35779501 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggcattt 35779600  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  35779601 gccagttgagctaggacttctagac 35779625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 42192643 - 42192768
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||| ||| |||||| ||||| |||||  |||||| ||||||||||||||||||||    
T  42192643 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaactcgggtcatgacgtccggccttgcaatttcggcattt 42192742  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    ||| |||||||||| |||||||||||    
T  42192743 gccagttgagctaggacttctagaca 42192768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 70527 - 70651
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||||||| | |||||  ||||||  |||||||||||||||||||    
T  70527 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcaaacccgggtcatgacgtccgaccttgcaatttcggcattt 70626  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  70627 gccagttgagctaggacttctagac 70651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 6602522 - 6602646
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | |||||  |||||| ||||||||||||||||||||    
T  6602522 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcattt 6602621  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  6602622 gccagttgagctaggacttctagac 6602646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 6677975 - 6678099
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | |||||  |||||| ||||||||||||||||||||    
T  6677975 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcattt 6678074  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  6678075 gccagttgagctaggacttctagac 6678099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 7792785 - 7792661
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    |||||||||| |||||||| || || |||||||||||| |||   ||| ||| |||||| ||| |  |||||||||||||||||||||||||||||||||    
T  7792785 tagatgaagtagtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaacccgagtcacaacgtccagccttgcaatttcggcattt 7792686  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  7792685 gccagttgagctaggacttctagac 7792661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 7813446 - 7813322
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| |  |||||||| ||| ||||||||||||| ||||||    
T  7813446 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgagtcacaacatccggccttgcaatttcagcattt 7813347  T
Q  262 gccggttgagctagaacttctagac 286  Q
    |||||||||||||| ||||||||||    
T  7813346 gccggttgagctaggacttctagac 7813322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 4530986 - 4531111
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||| ||| || ||||||||||||||| | |   ||||||| |||||| ||| | |||||  |||||||||||||||||||||||||||    
T  4530986 tagatgaagtggtaaaccactgaaattaaactcacacacagctgtgaggtcccgggttcgaacccgggtcatgacgtccagccttgcaatttcggcattt 4531085  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    |||  ||||||||| |||||||||||    
T  4531086 gccaattgagctaggacttctagaca 4531111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 162 - 289
Target Start/End: Complemental strand, 39303434 - 39303306
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaa-ctcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatt 260  Q
    ||||||||||||||||||| || ||||||| |||||||| |||   ||||||  |||||||||| || ||||  |||||| |||||||||||||||||||    
T  39303434 tagatgaagtggtaatccactgaaattaaaactcacacacaactgtgaggtctcgggttcaaacccatgtcatgacgtccggccttgcaatttcggcatt 39303335  T
Q  261 tgccggttgagctagaacttctagacaat 289  Q
    |||| |||||||||| |||||| ||||||    
T  39303334 tgccagttgagctaggacttcttgacaat 39303306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 3822520 - 3822395
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    |||| ||||||||||| || |  ||||||||||||||| |||   ||| |||||||||| ||| | |||||||||||||  |||| ||||||||||||||    
T  3822520 tagaagaagtggtaattcactaaaattaaactcacacacaactgtgagatcctgggttcgaacccgggtcacaacgtccgaccttacaatttcggcattt 3822421  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    ||| ||||| ||||||||||||||||    
T  3822420 gccagttgaactagaacttctagaca 3822395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 1078652 - 1078776
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| |||   |||||  |||||| ||||||||||||||||||||    
T  1078652 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacctgggtcatgacgtccggccttgcaatttcggcattt 1078751  T
Q  262 gccggttgagctagaacttctagac 286  Q
     || |||||||||  ||||||||||    
T  1078752 accagttgagctacgacttctagac 1078776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 9292142 - 9292018
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   || |||| | |||| || || ||||||||||||| || || |||||||| |||||    
T  9292142 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaagtcccgagttcgaattcgggtcacaacgtccggctttacaatttcgacattt 9292043  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  9292042 gccagttgagctaggacttctagac 9292018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 40911344 - 40911221
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||| ||| || ||||||||||||||| |     ||||||| || ||| ||| | |||||| |||||| ||||||||||||||||||||    
T  40911344 tagatgaagtggtaagccactgaaattaaactcacacacagttgtgaggtcccgg-ttcgaacccgggtcacgacgtccggccttgcaatttcggcattt 40911246  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  40911245 gccagttgagctagcacttctagac 40911221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 10963246 - 10963368
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || ||||||||||||  ||   ||||||| |||||| |||   | ||||||||| | |||||| |||||||||||||    
T  10963246 tagatgaagtggtaatccactgaaaataaactcacaca--actgtgaggtcccgggttcgaacctggatcacaacgttcggccttgtaatttcggcattt 10963343  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  10963344 gccagttgagctaggacttctagac 10963368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 12534724 - 12534846
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||| | || || ||||||||| ||  ||   ||| |||||||||| ||| | | |||| |||||| ||||||||||||||||||||    
T  12534724 tagatgaagtggtaatctactgaaaataaactcacgca--actgtgagatcctgggttcgaacccggatcacgacgtccggccttgcaatttcggcattt 12534821  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  12534822 gccagttgagctaggacttctagac 12534846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 162 - 255
Target Start/End: Original strand, 31532129 - 31532222
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcg 255  Q
    ||||||||||||||||||| || ||||||||||||||| |||   |||||||  ||||||||  | ||||||||||||| ||||||||||||||    
T  31532129 tagatgaagtggtaatccactgaaattaaactcacacacaactgtgaggtccccggttcaaatccgggtcacaacgtccggccttgcaatttcg 31532222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 162 - 264
Target Start/End: Complemental strand, 42885298 - 42885196
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||| ||| |||||| ||| | |||||  |||||| ||||||||||||||||||||    
T  42885298 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcattt 42885199  T
Q  262 gcc 264  Q
    |||    
T  42885198 gcc 42885196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 262
Target Start/End: Complemental strand, 5385459 - 5385362
Alignment:
Q  165 atgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttg 262  Q
    ||||||||||||  || || ||||||||||||||| |||   ||||||| |||||| |||   |||||| ||||||||||||||||||||||||||||    
T  5385459 atgaagtggtaaatcactgaaattaaactcacacacaactgtgaggtcccgggttcgaacctgggtcacgacgtccagccttgcaatttcggcatttg 5385362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 45264644 - 45264768
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    |||| |||||||||||||| || ||||||||||||||| |||   ||||||| |||||| ||| |  ||||| |||| |  ||| |||||||||||||||    
T  45264644 tagaggaagtggtaatccactgaaattaaactcacacaaaactgtgaggtcccgggttcgaacccgagtcacgacgttcgacct-gcaatttcggcattt 45264742  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    ||| |||||| ||| |||||||||||    
T  45264743 gccagttgagttaggacttctagaca 45264768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 39435406 - 39435282
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    |||||||||| ||||||||    ||||||||||||||| |||   ||||||  |||||| ||| ||| |||  ||||||  ||||||||||| | |||||    
T  39435406 tagatgaagtcgtaatccacataaattaaactcacacacaactgtgaggtctcgggttcgaacccagatcatgacgtccgaccttgcaattttgacattt 39435307  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||||||||||||||    
T  39435306 gccagttgagctagaacttctagac 39435282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 18386751 - 18386705
Alignment:
Q  243 ccttgcaatttcggcatttgccggttgagctagaacttctagacaat 289  Q
    |||||||||||| ||||||| | ||||||||||||||||||||||||    
T  18386751 ccttgcaatttcagcatttgtcagttgagctagaacttctagacaat 18386705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 29425475 - 29425356
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || ||||||||||||||| ||   |||| ||| |||      | | |||||  |||||| |||||||||||| |||||||    
T  29425475 tagatgaagtggtaatccactgaaattaaactcacacacaattgcgagatcccggg------cccgggtcatgacgtccggccttgcaattttggcattt 29425382  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    |||  ||||||||| |||||||||||    
T  29425381 gccaattgagctaggacttctagaca 29425356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 288
Target Start/End: Original strand, 31695273 - 31695399
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||| |||||| ||||||||||||||| ||    |||||||  ||||| ||  |   |||  || |||| ||||||||||| | ||| |    
T  31695273 tagatgaagtggtaaaccattgaaattaaactcacacacaattgtgaggtcccaggttcgaatccgaatcatgacatccaaccttgcaattttgacatgt 31695372  T
Q  262 gccggttgagctagaacttctagacaa 288  Q
    ||| |||||||||||||||||||||||    
T  31695373 gccagttgagctagaacttctagacaa 31695399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 6099643 - 6099570
Alignment:
Q  215 gggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctagacaa 288  Q
    |||||| ||||| |||||  |||||| |||||||||||||| |||||||  ||||| |||| ||||||||||||    
T  6099643 gggttcgaactcgggtcatgacgtccggccttgcaatttcgacatttgcaagttgaactaggacttctagacaa 6099570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 270
Target Start/End: Original strand, 41849236 - 41849343
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    |||||||| |||||||| | || ||||||||||||||| |||   ||||| | || ||| ||| ||| |||| ||||||  |||||||||||||||||||    
T  41849236 tagatgaaatggtaatc-actgaaattaaactcacacacaacagtgaggttccggattcgaacccagatcacgacgtccgaccttgcaatttcggcattt 41849334  T
Q  262 gccggttga 270  Q
    ||| |||||    
T  41849335 gccagttga 41849343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 22979646 - 22979603
Alignment:
Q  244 cttgcaatttcggcatttgccggttgagctagaacttctagaca 287  Q
    |||||||||||| |||||||| |||||||||| |||||||||||    
T  22979646 cttgcaatttcgacatttgccagttgagctaggacttctagaca 22979603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 9775046 - 9775087
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataac 203  Q
    |||||||||| ||||||||||  |||||||||||||||||||    
T  9775046 tagatgaagttgtaatccattcaaattaaactcacacataac 9775087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 20269598 - 20269554
Alignment:
Q  230 tcacaacgtccagccttgcaatttcggcatttgccggttgagcta 274  Q
    ||||||||||| ||||| ||||||||| ||||||| |||||||||    
T  20269598 tcacaacgtccggccttacaatttcggtatttgccagttgagcta 20269554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 21056227 - 21056183
Alignment:
Q  230 tcacaacgtccagccttgcaatttcggcatttgccggttgagcta 274  Q
    ||||||||||| ||||| ||||||||| ||||||| |||||||||    
T  21056227 tcacaacgtccggccttacaatttcggtatttgccagttgagcta 21056183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 31969724 - 31969848
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||| ||| || ||||||| ||||||| |||   ||||||| | |||| ||| | | |||  |||||  |||||| |||||||||||||    
T  31969724 tagatgaagtggtaaaccactgaaattaaattcacacacaactttgaggtcccgtgttcgaacccggatcatgacgtctggccttgaaatttcggcattt 31969823  T
Q  262 gccggttgagctagaacttctagac 286  Q
    |||  || |||||  ||||||||||    
T  31969824 gccaattaagctatgacttctagac 31969848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 12257480 - 12257356
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| ||  | |||||||||||||| ||| ||||||||||||||  ||||| ||||||||||||||    
T  12257480 tagatgaagtggtaatccactgaaaataaactcacacacaattatgaggtcctgggttcgaacccaggtcacaacgtctggccttacaatttcggcattt 12257381  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  12257380 gccagttgagctaggacttctagac 12257356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 13204081 - 13203957
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || ||||||||||||||||   ||||||| |||||| ||| | |||||| |||||| ||||||||||||||||||||    
T  13204081 tagatgaagtggtaatccactgaaaataaactcacacataactgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaatttcggcattt 13203982  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  13203981 gccagttgagctaggacttctagac 13203957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 162 - 285
Target Start/End: Original strand, 4824943 - 4825066
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    |||||||||||||||||||||| || |||||||||||| |||   ||||||| |||||  |||   ||||||||||||| ||||||||||||||||||||    
T  4824943 tagatgaagtggtaatccattgaaaataaactcacacacaactgtgaggtcccgggtttgaacctgggtcacaacgtccggccttgcaatttcggcattt 4825042  T
Q  262 gccggttgagctagaacttctaga 285  Q
    ||| |||||||||| |||||||||    
T  4825043 gccagttgagctaggacttctaga 4825066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 35317701 - 35317826
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| | | ||||||| |||||||  |||||||||||||||||||    
T  35317701 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaccccaggtcataacgtccgaccttgcaatttcggcattt 35317800  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    ||| |||||||||| |||||||||||    
T  35317801 gccagttgagctaggacttctagaca 35317826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 21018347 - 21018223
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | ||||||||||||| |||| ||||||| |||||||    
T  21018347 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggcctcgcaattttggcattt 21018248  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  21018247 gccagttgagctaggacttctagac 21018223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 157 - 288
Target Start/End: Original strand, 1191539 - 1191670
Alignment:
Q  157 ttttatagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcgg 256  Q
    |||| |||||||||| |||| ||| || ||||||||||||||| ||    ||||||| |||||| ||| | | |||| |||||| ||||||||||||||     
T  1191539 ttttttagatgaagttgtaagccactgaaattaaactcacacacaattgtgaggtcccgggttcgaacccggatcacgacgtccggccttgcaatttcgt 1191638  T
Q  257 catttgccggttgagctagaacttctagacaa 288  Q
    |||||||| |||||||||| ||||||||||||    
T  1191639 catttgccagttgagctaggacttctagacaa 1191670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 167 - 287
Target Start/End: Complemental strand, 27721550 - 27721430
Alignment:
Q  167 gaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgccgg 266  Q
    |||||||||||||| || ||||||| ||||| | |||   ||||||| |||||||||| | |||||| ||||||  | ||||||||||||||||| || |    
T  27721550 gaagtggtaatccactgaaattaaattcacatacaactgtgaggtcccgggttcaaacccgggtcacgacgtccgactttgcaatttcggcattttccag 27721451  T
Q  267 ttgagctagaacttctagaca 287  Q
    ||||||||| |||||||||||    
T  27721450 ttgagctaggacttctagaca 27721430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 40177748 - 40177622
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   || || | |||||  ||  ||||||||||||||| |||||||||||||| |||||    
T  40177748 tagatgaagtggtaatccactgaaaataaactcacacacaacggtgaagttccgggttggaatccaggtcacaacgtccggccttgcaatttcgacattt 40177649  T
Q  262 gccggttgagctagaacttctagacaa 288  Q
    | | ||| |||||| ||||||||||||    
T  40177648 gtcagttaagctaggacttctagacaa 40177622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 11124776 - 11124651
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| |  |||||||| |||| | ||  | ||||| |||||||| ||   ||||||| |||||| |||||||||||| | |||||    
T  11124776 tagatgaagtggtaatccactcaaattaaacccacataaaattatgaggttctgggttcgaatcaaggtcacgacgtccggccttgcaattttgacattt 11124677  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    ||| |||||||||| |||||||||||    
T  11124676 gccagttgagctaggacttctagaca 11124651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 9576988 - 9577089
Alignment:
Q  185 aattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctag 284  Q
    ||||||||||||| | |||   ||||| |||||||| ||| |||||||  |||||  ||||||||||||| ||||||||| |||||||||| ||||||||    
T  9576988 aattaaactcacatacaactgtgaggttctgggttcgaacccaggtcatgacgtctggccttgcaatttcagcatttgccagttgagctaggacttctag 9577087  T
Q  285 ac 286  Q
    ||    
T  9577088 ac 9577089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 32143472 - 32143536
Alignment:
Q  228 ggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctagacaattaa 292  Q
    ||||||||||||| |||||||||||| |||||||||| |||||||||  |||||||||| |||||    
T  32143472 ggtcacaacgtccggccttgcaattttggcatttgccagttgagctatgacttctagactattaa 32143536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 283
Target Start/End: Complemental strand, 6021116 - 6020995
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||| ||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||  | ||||||||||||  |||||||||||| | |||||    
T  6021116 tagataaagtggtaatccactgaaaataaactcacacacaactgagaggtcccgggttcgaatccgggtcacaacgtcaggccttgcaattttgacattt 6021017  T
Q  262 gccggttgagctagaacttcta 283  Q
    |||  ||||| ||| |||||||    
T  6021016 gccaattgagttaggacttcta 6020995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 8734121 - 8734000
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaa-ctcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatt 260  Q
    ||||||||||||||||||| || | ||||| |||||  | |||   ||||| | |||||| |||  ||||||| |||||| ||||||||||||| |||||    
T  8734121 tagatgaagtggtaatccactgaagttaaaactcacgtacaactgtgaggttccgggttcgaacctaggtcacgacgtccggccttgcaatttcagcatt 8734022  T
Q  261 tgccggttgagctagaacttct 282  Q
    |||| |||||||||| ||||||    
T  8734021 tgccagttgagctaggacttct 8734000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 38955283 - 38955227
Alignment:
Q  231 cacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctagaca 287  Q
    |||||| ||| |||||||||||||||||||| |  ||||||||||||||||||||||    
T  38955283 cacaacatcccgccttgcaatttcggcatttactagttgagctagaacttctagaca 38955227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 261
Target Start/End: Complemental strand, 23262668 - 23262573
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||    |||| || ||||| |||    |||||||| ||||||||||||||||||||||||    
T  23262668 tagatgaagtggtaatccactgaaaataaactcacacacaactgtaaggttctaggttcgaac----gtcacaacatccagccttgcaatttcggcattt 23262573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 2971108 - 2970983
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    |||||||||||||||||||  | || |||||||||||| |||   ||||||   ||||| ||| | ||||||||||||   |||| |||||||| |||||    
T  2971108 tagatgaagtggtaatccaccgaaaataaactcacacacaactgtgaggtctcaggttcgaacccgggtcacaacgtctgaccttacaatttcgacattt 2971009  T
Q  262 gccggttgagctagaacttctagaca 287  Q
      | |||||||||| |||||||||||    
T  2971008 atcagttgagctaggacttctagaca 2970983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 162 - 259
Target Start/End: Original strand, 31909389 - 31909486
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcat 259  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | |||||  |||||  ||||||||||||| ||||    
T  31909389 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtctggccttgcaatttcagcat 31909486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 3386977 - 3387029
Alignment:
Q  235 acgtccagccttgcaatttcggcatttgccggttgagctagaacttctagaca 287  Q
    |||||| ||||||||||||||||||||||| ||||| |||| |||| ||||||    
T  3386977 acgtccggccttgcaatttcggcatttgccagttgaactaggacttttagaca 3387029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 29265999 - 29265875
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||  | ||||||||| | |  ||||| ||||||| |||||    
T  29265999 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaatccgggtcacaacattcgaccttgtaatttcgacattt 29265900  T
Q  262 gccggttgagctagaacttctagac 286  Q
     |  |||||| ||| ||||||||||    
T  29265899 tctagttgagttaggacttctagac 29265875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 17465142 - 17465091
Alignment:
Q  235 acgtccagccttgcaatttcggcatttgccggttgagctagaacttctagac 286  Q
    |||||||||||||||||||||||||||||  | |||||||| |||| |||||    
T  17465142 acgtccagccttgcaatttcggcatttgctagctgagctaggacttttagac 17465091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 288
Target Start/End: Complemental strand, 35545974 - 35545931
Alignment:
Q  245 ttgcaatttcggcatttgccggttgagctagaacttctagacaa 288  Q
    |||||||||||||||||| | |||||| ||||||||||||||||    
T  35545974 ttgcaatttcggcatttgtcagttgagttagaacttctagacaa 35545931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 30127952 - 30127894
Alignment:
Q  228 ggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctagac 286  Q
    |||||| | |||| |||||||||||||||||||| |  |||||||||| ||||||||||    
T  30127952 ggtcacgatgtccggccttgcaatttcggcatttacaagttgagctaggacttctagac 30127894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 4444928 - 4444972
Alignment:
Q  238 tccagccttgcaatttcggcatttgccggttgagctagaacttct 282  Q
    ||||||||  ||||||||||||||||| |||||||||| ||||||    
T  4444928 tccagcctaacaatttcggcatttgccagttgagctaggacttct 4444972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 21112173 - 21112049
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||| ||||||||||| || || |||||||| ||| |||   |||||||  ||||| |||  ||||||| ||||    ||||||||||||| |||||    
T  21112173 tagatgatgtggtaatccactgaaaataaactcaaacacaactttgaggtcccaggttcgaacctaggtcacgacgtatgtccttgcaatttcgacattt 21112074  T
Q  262 gccggttgagctagaacttctagac 286  Q
    | | | |||||||| ||||||||||    
T  21112073 gtcagctgagctaggacttctagac 21112049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 43247654 - 43247778
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| ||||||||||||||| |||||||||||| |||||||    
T  43247654 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccaggtcacaacgtccggccttgcaattttggcattt 43247753  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  43247754 gccagttgagctaggacttctagac 43247778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 162 - 292
Target Start/End: Original strand, 29689486 - 29689616
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | |||||  |||||| ||||||||||||||||||||    
T  29689486 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcattt 29689585  T
Q  262 gccggttgagctagaacttctagacaattaa 292  Q
    ||| |||||||||| ||||||||||||||||    
T  29689586 gccagttgagctaggacttctagacaattaa 29689616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 162 - 290
Target Start/End: Original strand, 7824458 - 7824586
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | |||||  |||||| ||||||||||||||||||||    
T  7824458 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcattt 7824557  T
Q  262 gccggttgagctagaacttctagacaatt 290  Q
    ||| |||||||||| ||||||||||||||    
T  7824558 gccagttgagctaggacttctagacaatt 7824586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 165 - 290
Target Start/End: Complemental strand, 33334729 - 33334604
Alignment:
Q  165 atgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgcc 264  Q
    |||||||| ||||| | || ||||||||||||||| |||   ||||||| || ||| ||||||||||||||||||| || |||||||||||||||||||     
T  33334729 atgaagtgataatctactgaaattaaactcacacacaactgtgaggtcccggattcgaactcaggtcacaacgtccggctttgcaatttcggcatttgca 33334630  T
Q  265 ggttgagctagaacttctagacaatt 290  Q
     |||||||||| ||||||||||||||    
T  33334629 agttgagctaggacttctagacaatt 33334604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 51665929 - 51666053
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||    |||||| |||||| ||| |||||||  |||||| ||||||||||||||||||||    
T  51665929 tagatgaagtggtaatccactgaaaataaactcacacacaactgtaaggtcccgggttcgaacccaggtcatgacgtccggccttgcaatttcggcattt 51666028  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  51666029 gccagttgagctaggacttctagac 51666053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 54151685 - 54151809
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||| ||| |||   ||||||| |||||| ||| | |||||  |||||| ||||||||||||||||||||    
T  54151685 tagatgaagtggtaatccactgaaaataaactcatacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcattt 54151784  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  54151785 gccagttgagctaggacttctagac 54151809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 54158390 - 54158266
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | | |||  |||||| ||||||||||||||||||||    
T  54158390 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccggatcatgacgtccggccttgcaatttcggcattt 54158291  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  54158290 gccagttgagctaggacttctagac 54158266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 28844629 - 28844503
Alignment:
Q  162 tagatgaagtggtaatccattggaat-taaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatt 260  Q
    ||||||||||||||||||| || ||  |||||||||||| |||   ||||| |  ||||| ||| | ||||||||||||| |||||||||||||||||||    
T  28844629 tagatgaagtggtaatccactgaaaaataaactcacacacaactgtgaggttccaggttcgaacccgggtcacaacgtccggccttgcaatttcggcatt 28844530  T
Q  261 tgccggttgagctagaacttctagaca 287  Q
    || | ||||||||||||||||||||||    
T  28844529 tgtcagttgagctagaacttctagaca 28844503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 55018040 - 55018165
Alignment:
Q  164 gatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgc 263  Q
    ||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | |||||| |||||| |||||||||||| | |||||||    
T  55018040 gatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaattttgacatttgc 55018139  T
Q  264 cggttgagctagaacttctagacaat 289  Q
    | |||||| ||| |||||||||||||    
T  55018140 cagttgagttaggacttctagacaat 55018165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 162 - 274
Target Start/End: Original strand, 3112999 - 3113111
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||| ||| |||||| ||||| ||| || |||||| ||||||||||||||||||||    
T  3112999 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaactcgggttacgacgtccggccttgcaatttcggcattt 3113098  T
Q  262 gccggttgagcta 274  Q
    ||| |||||||||    
T  3113099 gccagttgagcta 3113111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 4601549 - 4601425
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    |||||||| |||||||||| || || |||||||||||| |||   ||||| | |||||| ||| | |||||  |||||| ||||||||||||||||||||    
T  4601549 tagatgaactggtaatccactgaaaataaactcacacacaactgtgaggttccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcattt 4601450  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  4601449 gccagttgagctaggacttctagac 4601425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 162 - 274
Target Start/End: Original strand, 36228998 - 36229110
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    |||||||||||||||||||||| || |||||||||||| |||   ||||||| |||||| ||| | | |||  |||||| ||||||||||||||||||||    
T  36228998 tagatgaagtggtaatccattgaaaataaactcacacacaactgtgaggtcccgggttcgaacccggatcatgacgtccggccttgcaatttcggcattt 36229097  T
Q  262 gccggttgagcta 274  Q
    ||| |||||||||    
T  36229098 gccagttgagcta 36229110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 1778975 - 1778851
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    |||||||||||||||||||||| || |||| ||| ||| ||    ||||| | |||||| ||| | |||||||| |||| ||||||||||||||||||||    
T  1778975 tagatgaagtggtaatccattgaaaataaattcaaacacaattgtgaggttccgggttcgaacccgggtcacaatgtccggccttgcaatttcggcattt 1778876  T
Q  262 gccggttgagctagaacttctagac 286  Q
    | | |||||||||| ||||||||||    
T  1778875 gtcagttgagctaggacttctagac 1778851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 286
Target Start/End: Original strand, 35461509 - 35461607
Alignment:
Q  188 taaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctagac 286  Q
    |||||||||||| |||   ||||| | |||||| ||| | | |||||||||||  |||||||||||||||||||||| |||||||||||||||||||||    
T  35461509 taaactcacacacaactgtgaggttccgggttcgaacccggatcacaacgtccgaccttgcaatttcggcatttgccagttgagctagaacttctagac 35461607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 270
Target Start/End: Original strand, 9349680 - 9349788
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | | |||| ||||||  |||||||||||||||||||    
T  9349680 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccggatcacgacgtccgaccttgcaatttcggcattt 9349779  T
Q  262 gccggttga 270  Q
    ||| |||||    
T  9349780 gccagttga 9349788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 42392809 - 42392933
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||| ||| || ||||||||||||||| ||    ||||||| |||||| | | | | |||  ||||||  |||||||||||||||||||    
T  42392809 tagatgaagtggtaaaccactgaaattaaactcacacacaattgtgaggtcccgggttcgagcccggatcatgacgtccgaccttgcaatttcggcattt 42392908  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  42392909 gccagttgagctaggacttctagac 42392933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 29750679 - 29750621
Alignment:
Q  228 ggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctagac 286  Q
    |||||| |||||||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  29750679 ggtcacgacgtccagccttgcaatttcggcatttgccagttgagttagtacttctagac 29750621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 43775347 - 43775221
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || ||||||||||| | | |||   ||| | | || ||| ||| || ||||||||||||  |||| ||||||||||||||    
T  43775347 tagatgaagtggtaatccactgaaattaaactcaaatacaactgtgagattccggattcgaacgcaagtcacaacgtccgaccttacaatttcggcattt 43775248  T
Q  262 gccggttgagctagaacttctagacaa 288  Q
    ||| |||||| |||||||| |||||||    
T  43775247 gccagttgagttagaacttttagacaa 43775221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 47635009 - 47635099
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatt 252  Q
    ||||||||||||||||| | || ||||||||| |||||||||  ||||||||||| ||| ||| |||||||||| ||||  ||||||||||    
T  47635009 tagatgaagtggtaatcaactgaaattaaacttacacataactgcgaggtcctggattcgaacccaggtcacaatgtccgaccttgcaatt 47635099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 50729648 - 50729524
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||| |||| ||||||||||||| | |||  |||||||    |||| ||  ||| |||| |||||   |||| ||||||||||||||    
T  50729648 tagatgaagtggtaatctattgaaattaaactcacataaaactgcgaggtctcatgttcgaatccagatcacgacgtctgaccttacaatttcggcattt 50729549  T
Q  262 gccggttgagctagaacttctagac 286  Q
    | | |||||||||||||||||||||    
T  50729548 gtcagttgagctagaacttctagac 50729524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 50783201 - 50783325
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||| |||| ||||||||||||| | |||  |||||||    |||| ||  ||| |||| |||||   |||| ||||||||||||||    
T  50783201 tagatgaagtggtaatctattgaaattaaactcacataaaactgcgaggtctcatgttcgaatccagatcacgacgtctgaccttacaatttcggcattt 50783300  T
Q  262 gccggttgagctagaacttctagac 286  Q
    | | |||||||||||||||||||||    
T  50783301 gtcagttgagctagaacttctagac 50783325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 255
Target Start/End: Original strand, 38257307 - 38257400
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcg 255  Q
    ||||||||||||||||||  || ||||||||||||||| ||    ||||| |||||||| ||| |||||||| ||||||  |||||||||||||    
T  38257307 tagatgaagtggtaatccgctgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtcacgacgtccgaccttgcaatttcg 38257400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 51112541 - 51112588
Alignment:
Q  235 acgtccagccttgcaatttcggcatttgccggttgagctagaacttct 282  Q
    |||||| |||| |||||||||||||||||| |||||||||| ||||||    
T  51112541 acgtccggcctagcaatttcggcatttgccagttgagctaggacttct 51112588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 28458786 - 28458662
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||  |||| | ||||||| ||||  |||   ||||| |||||||||||| | | |||| || ||  |||||||||||||| |||||    
T  28458786 tagatgaagtggtaatttattgaagttaaacttacacgcaactgtgaggttctgggttcaaac-cggatcacgacatctggccttgcaatttcgacattt 28458688  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    | | |||||| ||| |||||||||||    
T  28458687 gtcagttgagttaggacttctagaca 28458662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 14868935 - 14868979
Alignment:
Q  238 tccagccttgcaatttcggcatttgccggttgagctagaacttct 282  Q
    ||||||||  ||||||||||||||||| |||||||||| ||||||    
T  14868935 tccagcctaacaatttcggcatttgccagttgagctaggacttct 14868979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 45686097 - 45686157
Alignment:
Q  228 ggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctagacaa 288  Q
    |||||| |||||| ||||| ||||||||||||||||  |||||||||  ||||||| ||||    
T  45686097 ggtcacgacgtccggcctttcaatttcggcatttgctagttgagctaagacttctaaacaa 45686157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 28455998 - 28455874
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | ||||||||||||| ||||||||||||||||||||    
T  28455998 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggcattt 28455899  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  28455898 gccagttgagctaggacttctagac 28455874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 164 - 288
Target Start/End: Original strand, 41761417 - 41761541
Alignment:
Q  164 gatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgc 263  Q
    ||||||||||||||||| || || |||||||||||| |||   |||||||||||||| ||| | ||||||||||||| ||||||||||||||||||||||    
T  41761417 gatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcctgggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgc 41761516  T
Q  264 cggttgagctagaacttctagacaa 288  Q
    | ||||| |||| ||||||||||||    
T  41761517 cagttgaactaggacttctagacaa 41761541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 165 - 275
Target Start/End: Complemental strand, 39276471 - 39276361
Alignment:
Q  165 atgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgcc 264  Q
    |||||||||||||||| || || ||||||||||||||||   ||||||| |||||| ||| | ||||||||||||| |||||||||||||||||||||||    
T  39276471 atgaagtggtaatccactgaaaataaactcacacataactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgcc 39276372  T
Q  265 ggttgagctag 275  Q
     ||||||||||    
T  39276371 agttgagctag 39276361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 48660146 - 48660020
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||| ||| |||||| ||| | ||||| ||||||| ||||||||||||||||||||    
T  48660146 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaacccgggtcataacgtccggccttgcaatttcggcattt 48660047  T
Q  262 gccggttgagctagaacttctagacaa 288  Q
    ||| |||||||||| ||||||||||||    
T  48660046 gccagttgagctaggacttctagacaa 48660020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 32007198 - 32007074
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | |||||  |||||| ||||||||||||||||||||    
T  32007198 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcattt 32007099  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  32007098 gccagttgagctaggacttctagac 32007074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 35945921 - 35945798
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||| ||||||| |||   ||||| | |||||| ||| ||||||||||||||||||||| ||||||||||||||    
T  35945921 tagatgaagtggtaatccactgaaaataaattcacacacaactgtgaggttccgggttcgaacccaggtcacaacgtccagccttacaatttcggcattt 35945822  T
Q  262 gccggttgagctagaacttctaga 285  Q
     || |||||||||| |||||||||    
T  35945821 accagttgagctaggacttctaga 35945798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 5055792 - 5055916
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | |||||  |||||| ||||||||||||||||||||    
T  5055792 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcattt 5055891  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| | |||||||| ||||||||||    
T  5055892 gccagctgagctaggacttctagac 5055916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 41808326 - 41808202
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||| | |||||| ||| | |||||  |||||| ||||||||||||||||||||    
T  41808326 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggttccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcattt 41808227  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  41808226 gccagttgagctaggacttctagac 41808202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 5943805 - 5943682
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||| |||||||||| ||||||||||||| | |||   ||||||||| |||| ||| | |||||| |||||| ||||||||||||||||||||    
T  5943805 tagatgaagtgataatccattgaaattaaactcacaaacaactgtgaggtcctgagttcgaacccgggtcacgacgtccggccttgcaatttcggcattt 5943706  T
Q  262 gccggttgagctagaacttctaga 285  Q
    | | |||||||||| | |||||||    
T  5943705 gtcagttgagctaggaattctaga 5943682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 185 - 287
Target Start/End: Original strand, 46447404 - 46447506
Alignment:
Q  185 aattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctag 284  Q
    |||||||||||||||||||   ||||||| |||||| ||| | ||| || ||||| |||||||||||||||||||||||| ||||| |||||||||||||    
T  46447404 aattaaactcacacataactgtgaggtcccgggttcgaacccgggttacgacgtcgagccttgcaatttcggcatttgccagttgaactagaacttctag 46447503  T
Q  285 aca 287  Q
    |||    
T  46447504 aca 46447506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 45813015 - 45813140
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | |||||| | ||||  |||||||||||||||||||    
T  45813015 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacgatgtccgaccttgcaatttcggcattt 45813114  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    | | |||||||||| |||||||||||    
T  45813115 gtcagttgagctaggacttctagaca 45813140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 192539 - 192415
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||  || || |||||||||||| |||   |||||||||||||| ||| | | ||||||||||| ||||||||||||  ||||||    
T  192539 tagatgaagtggtaatccgctgaaaataaactcacacacaactgtgaggtcctgggttcgaacacggatcacaacgtccggccttgcaattttagcattt 192440  T
Q  262 gccggttgagctagaacttctagac 286  Q
    | | |||||||||| ||||||||||    
T  192439 gtcagttgagctaggacttctagac 192415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 20872 - 20748
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| |  || |||||||||||| |||   ||||||| |||||| ||  | ||||||  ||||| ||||||||||||||||||||    
T  20872 tagatgaagtggtaatccactaaaaataaactcacacacaactgtgaggtcccgggttcgaatccgggtcacggcgtcctgccttgcaatttcggcattt 20773  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||| ||| ||||||||||    
T  20772 gccagttgagttaggacttctagac 20748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 207 - 283
Target Start/End: Complemental strand, 29587331 - 29587255
Alignment:
Q  207 gaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttcta 283  Q
    ||||||| |||||| ||| |||||||| |||||| ||||||||||||||||||||||| |||||||||| |||||||    
T  29587331 gaggtcccgggttcgaacccaggtcacgacgtccggccttgcaatttcggcatttgccagttgagctaggacttcta 29587255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 29994387 - 29994511
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||| ||| || ||||||||||||||| ||    ||||||  |||||| ||| | | |||  |||||  ||||||||||||||||||||    
T  29994387 tagatgaagtggtaaaccactgaaattaaactcacacacaattgtgaggtctcgggttcgaacccggatcatgacgtctggccttgcaatttcggcattt 29994486  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  29994487 gccagttgagctaggacttctagac 29994511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 47111537 - 47111469
Alignment:
Q  206 cgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgccggttgagcta 274  Q
    ||||||||||||||||||| |||||||| ||||||  |||||||||||||||||||| | |||||||||    
T  47111537 cgaggtcctgggttcaaacccaggtcacgacgtccgaccttgcaatttcggcatttgtcagttgagcta 47111469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 13109894 - 13109770
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || ||||||||||||||| |||   ||||| || ||||| || || ||| || ||||||  |||||||||||   |||||    
T  13109894 tagatgaagtggtaatccactgaaattaaactcacacacaactgtgaggttctaggttcgaattcgggttacgacgtccgaccttgcaatttaatcattt 13109795  T
Q  262 gccggttgagctagaacttctagac 286  Q
    | | ||| |||||||||||||||||    
T  13109794 gtcagttaagctagaacttctagac 13109770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 287
Target Start/End: Original strand, 50106199 - 50106325
Alignment:
Q  161 atagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatt 260  Q
    ||||||||| ||| |||||| || || ||||||||||||||||   ||||||| |||||| ||| | ||||||||||| | |||||||||| ||  ||||    
T  50106199 atagatgaaatggcaatccactgaaaataaactcacacataactgtgaggtcccgggttcgaacccgggtcacaacgttcggccttgcaatctcaacatt 50106298  T
Q  261 tgccggttgagctagaacttctagaca 287  Q
    | || ||| |  ||| |||||||||||    
T  50106299 taccagttaaattaggacttctagaca 50106325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 45294700 - 45294656
Alignment:
Q  244 cttgcaatttcggcatttgccggttgagctagaacttctagacaa 288  Q
    ||||||||||||||||||||  |||||||||| ||||||||||||    
T  45294700 cttgcaatttcggcatttgctagttgagctaggacttctagacaa 45294656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 284
Target Start/End: Complemental strand, 21939066 - 21938944
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||| ||  || |||||||||| |||| |||   |||||||||| ||| ||  | | |||  || ||| ||||| ||||||||||||||    
T  21939066 tagatgaagtggtaaaccgctgaaattaaactcgcacacaactgtgaggtcctggattcgaatccggatcatgacatccggccttacaatttcggcattt 21938967  T
Q  262 gccggttgagctagaacttctag 284  Q
     || |||||||||| ||||||||    
T  21938966 accagttgagctaggacttctag 21938944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 25931219 - 25931277
Alignment:
Q  228 ggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctagac 286  Q
    |||||| ||||| |||||||||||||||||||||| | |||||| ||| | ||||||||    
T  25931219 ggtcacgacgtctagccttgcaatttcggcatttgtcagttgagttaggatttctagac 25931277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 4066017 - 4065960
Alignment:
Q  230 tcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctagaca 287  Q
    ||||||||| ||| ||||||||||||| ||||| | ||||||||||  ||||||||||    
T  4066017 tcacaacgttcagtcttgcaatttcggtatttgtcagttgagctaggtcttctagaca 4065960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 25931162 - 25931198
Alignment:
Q  163 agatgaagtggtaatccattggaattaaactcacaca 199  Q
    |||||||||||||||| |||| |||||||||||||||    
T  25931162 agatgaagtggtaatctattgaaattaaactcacaca 25931198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 44084064 - 44083939
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | ||||||||||||| |||||||||||| |||||||    
T  44084064 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggcattt 44083965  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    ||| |||||||||| |||||||||||    
T  44083964 gccagttgagctaggacttctagaca 44083939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 2146760 - 2146634
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || ||||| |||||| |||   |||||| ||||||| ||| | ||||||||||||| ||||||||||||||||||||    
T  2146760 tagatgaagtggtaatccactgaaaataaacccacacacaactgtgaggtcttgggttcgaacccgggtcacaacgtccggccttgcaatttcggcattt 2146661  T
Q  262 gccggttgagctagaacttctagacaa 288  Q
     || |||||||||| ||||||||||||    
T  2146660 tccagttgagctaggacttctagacaa 2146634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 162 - 289
Target Start/End: Original strand, 31770536 - 31770663
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | |||||  || ||| ||||||||||||||||||||    
T  31770536 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacatccggccttgcaatttcggcattt 31770635  T
Q  262 gccggttgagctagaacttctagacaat 289  Q
    ||| |||||||||| |||||||||||||    
T  31770636 gccagttgagctaggacttctagacaat 31770663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 23358309 - 23358183
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | ||| || |||||| ||||||||||||||| ||||    
T  23358309 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggttacgacgtccggccttgcaatttcggtattt 23358210  T
Q  262 gccggttgagctagaacttctagacaa 288  Q
    ||| |||||||||| ||||||||||||    
T  23358209 gccagttgagctaggacttctagacaa 23358183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 4106862 - 4106738
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | |||||  |||||| ||||||||||||||||||||    
T  4106862 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcattt 4106763  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||| ||||| ||||||||||    
T  4106762 gccagttgggctaggacttctagac 4106738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 40058362 - 40058238
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||| ||| |||   ||||||| |||||| ||| | ||||||||||||| |||||||||||| |||||||    
T  40058362 tagatgaagtggtaatccactgaaaataaactcatacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggcattt 40058263  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||| ||| ||||||||||    
T  40058262 gccagttgagttaggacttctagac 40058238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 162 - 285
Target Start/End: Original strand, 47250255 - 47250378
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| ||| | ||| |||  ||||| ||| | |||||  |||||| ||||||||||||||||||||    
T  47250255 tagatgaagtggtaatccactgaaaataaactcacacacaactaagagatcccaggttcgaacccgggtcatgacgtccggccttgcaatttcggcattt 47250354  T
Q  262 gccggttgagctagaacttctaga 285  Q
    ||| |||||||||| |||||||||    
T  47250355 gccagttgagctaggacttctaga 47250378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 162 - 288
Target Start/End: Original strand, 25112251 - 25112377
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || ||||| |||||| |||   ||||||| |||||| ||| |||||||  ||||||  |||||||||||||| ||||    
T  25112251 tagatgaagtggtaatccactgaaaataaacccacacacaactgtgaggtcccgggttcgaacccaggtcatgacgtccgaccttgcaatttcggtattt 25112350  T
Q  262 gccggttgagctagaacttctagacaa 288  Q
    ||| |||||||||| ||||||||||||    
T  25112351 gccagttgagctaggacttctagacaa 25112377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 25546279 - 25546404
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||| ||| || ||||||||||||||| |||   ||||||| || ||| ||| | |||||  |||||| ||||||||||||||||||||    
T  25546279 tagatgaagtggtaaaccactgaaattaaactcacacacaactgtgaggtcccggattcgaacccgggtcatgacgtccggccttgcaatttcggcattt 25546378  T
Q  262 gccggttgagctagaacttctagaca 287  Q
     || |||||||||| |||||||||||    
T  25546379 accagttgagctaggacttctagaca 25546404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 8439202 - 8439076
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||| ||||||| |||   |||||||||||||| ||  | |||||||||||||  ||||||||||| |||||||    
T  8439202 tagatgaagtggtaatccactgaaaataaattcacacacaactgtgaggtcctgggttcgaatccgggtcacaacgtccgaccttgcaattttggcattt 8439103  T
Q  262 gccggttgagctagaacttctagacaa 288  Q
    ||| ||||| |||| ||||||| ||||    
T  8439102 gccagttgaactaggacttctaaacaa 8439076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 282
Target Start/End: Original strand, 43753757 - 43753878
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaa-ctcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatt 260  Q
    ||||||||||||||||||| || ||||||| |||||| | |||   ||||| | |||||| ||| |||||||| |||||| |||||||||||||||||||    
T  43753757 tagatgaagtggtaatccactgaaattaaaactcacatacaactgtgaggttccgggttcgaacccaggtcacgacgtccggccttgcaatttcggcatt 43753856  T
Q  261 tgccggttgagctagaacttct 282  Q
    |||| ||||| |||| ||||||    
T  43753857 tgccagttgaactaggacttct 43753878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 11355947 - 11355823
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || ||||||||||||||| |||   ||| ||| |||||| ||  ||| ||| |||||||  |||||||||||||||||||    
T  11355947 tagatgaagtggtaatccactgaaattaaactcacacacaactgtgagatcccgggttcgaatccagatcataacgtccgaccttgcaatttcggcattt 11355848  T
Q  262 gccggttgagctagaacttctagac 286  Q
    |   ||||| |||||||||||||||    
T  11355847 gttagttgaactagaacttctagac 11355823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 275
Target Start/End: Original strand, 29484762 - 29484872
Alignment:
Q  165 atgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgcc 264  Q
    |||||||| ||||||| || ||||||||||||| | ||    ||||||| |||||||||| ||| |||  |||||| |||||||||||||||||||||||    
T  29484762 atgaagtgataatccactgaaattaaactcacatacaattgtgaggtcccgggttcaaacccagatcatgacgtccggccttgcaatttcggcatttgcc 29484861  T
Q  265 ggttgagctag 275  Q
     ||||||||||    
T  29484862 agttgagctag 29484872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 264
Target Start/End: Complemental strand, 41183939 - 41183837
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||| ||||||| || || ||||||||||||||||   |||||  ||||||| ||| |||||||  |||||| ||||||||||||||||||||    
T  41183939 tagatgaagtgataatccactgaaaataaactcacacataactgtgaggtattgggttcgaacccaggtcaagacgtccggccttgcaatttcggcattt 41183840  T
Q  262 gcc 264  Q
    |||    
T  41183839 gcc 41183837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 4107433 - 4107324
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | ||||   |||||| ||||||||||||||||||||    
T  4107433 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcgtgacgtccggccttgcaatttcggcattt 4107334  T
Q  262 gccggttgag 271  Q
    ||| ||||||    
T  4107333 gccagttgag 4107324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 7162794 - 7162916
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || ||||||||||||  |    ||||||| | |||| ||| | ||||||||||||| ||||| ||||||||||||||    
T  7162794 tagatgaagtggtaatccactgaaaataaactcacaca--attgtgaggtcccgagttcgaacccgggtcacaacgtccggccttacaatttcggcattt 7162891  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| |||| |||||    
T  7162892 gccagttgagctaggacttttagac 7162916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 29255836 - 29255717
Alignment:
Q  165 atgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgcc 264  Q
    |||||||| |||||||||| |||||||||||| || |||    || |||||||||| ||| | | |||| ||||||| ||||||||||| ||||||||||    
T  29255836 atgaagtgataatccattg-aattaaactcacgca-aactgtaagatcctgggttcgaacccggatcacgacgtccaaccttgcaattttggcatttgcc 29255739  T
Q  265 ggttgagctagaacttctagac 286  Q
     |||||||||||||||||||||    
T  29255738 agttgagctagaacttctagac 29255717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 280
Target Start/End: Original strand, 27229484 - 27229600
Alignment:
Q  165 atgaagtggtaatccattggaattaaa-ctcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgc 263  Q
    |||||||||||||||| || ||||||| |||||||| |||   ||||||| |||||| ||| |||||||| |||||| |||||||||||||| ||||||     
T  27229484 atgaagtggtaatccactgaaattaaaactcacacacaactgtgaggtcccgggttcgaacccaggtcacgacgtccggccttgcaatttcgacatttgt 27229583  T
Q  264 cggttgagctagaactt 280  Q
    | |||||| ||| ||||    
T  27229584 cagttgagttaggactt 27229600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 255
Target Start/End: Original strand, 39513988 - 39514080
Alignment:
Q  163 agatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcg 255  Q
    ||||||||||||||||||  | |||||||||||||||||||    |||||| |||||| ||||| |||||| |||||| ||||||||||||||    
T  39513988 agatgaagtggtaatccaccgaaattaaactcacacataactgtaaggtcccgggttcgaactcgggtcacgacgtccggccttgcaatttcg 39514080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 162 - 276
Target Start/End: Complemental strand, 5587404 - 5587290
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| |  |||||||||||||| |||    |||||||||||||| ||| | | |||| | |||| | ||||||||||||||||||    
T  5587404 tagatgaagtggtaatccactaaaattaaactcacacgtaaatgtgaggtcctgggttcgaacccggatcacgatgtccggacttgcaatttcggcattt 5587305  T
Q  262 gccggttgagctaga 276  Q
    | | |||||||||||    
T  5587304 gtcagttgagctaga 5587290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 162 - 276
Target Start/End: Complemental strand, 5592365 - 5592251
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| |  |||||||||||||| |||    |||||||||||||| ||| | | |||| | |||| | ||||||||||||||||||    
T  5592365 tagatgaagtggtaatccactaaaattaaactcacacgtaaatgtgaggtcctgggttcgaacccggatcacgatgtccggacttgcaatttcggcattt 5592266  T
Q  262 gccggttgagctaga 276  Q
    | | |||||||||||    
T  5592265 gtcagttgagctaga 5592251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 27915584 - 27915710
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactca-ggtcacaacgtccagccttgcaatttcggcatt 260  Q
    |||||||||||||||| ||||| ||||||||||| ||| |||   ||| || | ||||| |||||| |||||| ||||||  |||||||||||| |||||    
T  27915584 tagatgaagtggtaattcattgaaattaaactcatacacaactgtgagatcttaggttcgaactcaaggtcacgacgtccgaccttgcaatttcagcatt 27915683  T
Q  261 tgccggttgagctagaacttctagaca 287  Q
    | || |||||| ||| |||||||||||    
T  27915684 taccagttgagttaggacttctagaca 27915710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 161 - 287
Target Start/End: Complemental strand, 38033854 - 38033728
Alignment:
Q  161 atagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatt 260  Q
    ||||||||||||||| |||| || || |||||||||||| |||   ||||||| || ||  ||| | | |||||| ||||  |||| |||||||||||||    
T  38033854 atagatgaagtggtactccactgaaaataaactcacacacaactgtgaggtcccggatttgaacccggatcacaatgtccgaccttacaatttcggcatt 38033755  T
Q  261 tgccggttgagctagaacttctagaca 287  Q
    |||| |||||| |||||||||||||||    
T  38033754 tgccagttgagttagaacttctagaca 38033728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 162 - 288
Target Start/End: Original strand, 48444156 - 48444282
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    |||||||||||||||| || || ||||||||| ||||| |||   || || | |||||| ||| ||| |||| |||||||| ||| ||||||||||||||    
T  48444156 tagatgaagtggtaattcactgaaattaaacttacacacaactgtgaagtacagggttcgaacccagatcacgacgtccagtcttacaatttcggcattt 48444255  T
Q  262 gccggttgagctagaacttctagacaa 288  Q
      | |||||||||| ||||||||||||    
T  48444256 ttcagttgagctaggacttctagacaa 48444282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 28603135 - 28603026
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| ||  |||||||||||| | ||    || |||  |||||| |||||||||||| |||||| ||||||| ||||||||||||    
T  28603135 tagatgaagtggtaatccactgagattaaactcacatacaattgtgaagtctcgggttcgaactcaggtcacgacgtccggccttgcgatttcggcattt 28603036  T
Q  262 gccggttgag 271  Q
    ||| ||||||    
T  28603035 gccagttgag 28603026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 286
Target Start/End: Original strand, 5772826 - 5772947
Alignment:
Q  165 atgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgcc 264  Q
    |||||||||||| ||| || ||||||||||||||| |||   |||||   | |||| ||| | |||||||  ||||  ||||||||||||||||||||||    
T  5772826 atgaagtggtaaaccactgaaattaaactcacacacaactgtgaggtttcgagttcgaacccgggtcacattgtccgaccttgcaatttcggcatttgcc 5772925  T
Q  265 ggttgagctagaacttctagac 286  Q
     |||||||||  ||||||||||    
T  5772926 cgttgagctaagacttctagac 5772947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 32606400 - 32606460
Alignment:
Q  228 ggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctagacaa 288  Q
    |||||| |||||| ||||||||||||||| ||||| | |||||| ||||||||||||||||    
T  32606400 ggtcacgacgtccggccttgcaatttcggtatttgtcagttgagttagaacttctagacaa 32606460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 257
Target Start/End: Original strand, 47570722 - 47570817
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggc 257  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||| ||| |||||| ||| | |||||  |||||| ||||||||||||||||    
T  47570722 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggc 47570817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 48146877 - 48146754
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || | |||||||||| |||   ||||||| |||||| ||| | |||||| || ||   |||||||||||| ||||||    
T  48146877 tagatgaagtggtaatccaatgaaaattaactcacacacaactgtgaggtcccgggttcgaacccgggtcacgacatctgaccttgcaatttctgcattt 48146778  T
Q  262 gccggttgagctagaacttctaga 285  Q
      | ||||||||||||| ||||||    
T  48146777 ttcagttgagctagaacctctaga 48146754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 43203427 - 43203306
Alignment:
Q  165 atgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgcc 264  Q
    ||||||||  |||||| || || |||||||||||| |||    |||||| |||||| ||| | ||||||  ||||| ||||| |||||||||||||||||    
T  43203427 atgaagtgaaaatccactgtaaataaactcacacacaactgtaaggtcccgggttcgaacccgggtcacggcgtcccgccttacaatttcggcatttgcc 43203328  T
Q  265 ggttgagctagaacttctagac 286  Q
     ||| | |||| ||||||||||    
T  43203327 agttcatctaggacttctagac 43203306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 47557905 - 47557781
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||| ||| || ||||||||||||| | |||   ||||| | |||||| ||| | |||||  |||| |  ||||| |||||||||||||    
T  47557905 tagatgaagtggtaaaccactgaaattaaactcacatacaactgtgaggttccgggttcgaacccgggtcatgacgtgcgaccttgtaatttcggcattt 47557806  T
Q  262 gccggttgagctagaacttctagac 286  Q
     || |||||| ||| ||||||||||    
T  47557805 accagttgagttaggacttctagac 47557781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 197
Target Start/End: Original strand, 23036209 - 23036244
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcaca 197  Q
    |||||||||||||||||||||| |||||||||||||    
T  23036209 tagatgaagtggtaatccattgaaattaaactcaca 23036244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 287
Target Start/End: Original strand, 25049965 - 25050087
Alignment:
Q  165 atgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgcc 264  Q
    ||||| |||||||||| |  ||||||||||||| | |||   ||| || || |||||||  |||||||| |||||   |||| |||||||||||||| |     
T  25049965 atgaaatggtaatccacttaaattaaactcacatacaactgtgagatcatgagttcaaatccaggtcacgacgtctgacctttcaatttcggcattttct 25050064  T
Q  265 ggttgagctagaacttctagaca 287  Q
     |||||| |||||||||||||||    
T  25050065 agttgagttagaacttctagaca 25050087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 34763512 - 34763454
Alignment:
Q  228 ggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctagac 286  Q
    |||||| ||||||  ||||||||||||| ||||| || |||||||||| ||||||||||    
T  34763512 ggtcacgacgtccgcccttgcaatttcgacattttccagttgagctaggacttctagac 34763454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 288
Target Start/End: Original strand, 47960975 - 47961085
Alignment:
Q  178 ccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaa 277  Q
    |||||| ||||||||||||||| ||| ||||||||| |||||| ||| | | |||  |||||   ||||| ||||| |||||||||  |||||| ||  |    
T  47960975 ccattgaaattaaactcacacacaactacgaggtcccgggttcgaacccggttcatgacgtctgaccttgtaattttggcatttgcaagttgagttaaga 47961074  T
Q  278 cttctagacaa 288  Q
    |||||||||||    
T  47961075 cttctagacaa 47961085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 4001848 - 4001885
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacaca 199  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  4001848 tagatgaagtggtaaaccattgaaattaaactcacaca 4001885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 38781212 - 38781304
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttc 254  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||  | |||||| || | | |||||||||||||    
T  38781212 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaatccgggtcacgacattcggccttgcaatttc 38781304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 43171016 - 43171068
Alignment:
Q  235 acgtccagccttgcaatttcggcatttgccggttgagctagaacttctagaca 287  Q
    |||||| ||||||||||||||||||||| | |||||| ||| |||| ||||||    
T  43171016 acgtccggccttgcaatttcggcatttgtcagttgagttaggacttatagaca 43171068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 1174075 - 1173950
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| |||||||  |||||| ||||||||||||||||||||    
T  1174075 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccaggtcatgacgtccggccttgcaatttcggcattt 1173976  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    ||| |||||||||| |||||||||||    
T  1173975 gccagttgagctaggacttctagaca 1173950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 43139910 - 43140034
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | |||||  |||||| ||||||||||||||||||||    
T  43139910 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcattt 43140009  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||||||||||||||    
T  43140010 gccagttgagctagaacttctagac 43140034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 19849507 - 19849631
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||| |||||| || |||||||||||| |||   ||||||| |||||| ||| | | |||| |||||| ||||||||||||||||||||    
T  19849507 tagatgaagtggtaaaccattgaaaataaactcacacacaactgtgaggtcccgggttcgaacccggatcacgacgtccggccttgcaatttcggcattt 19849606  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  19849607 gccagttgagctaggacttctagac 19849631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 34739404 - 34739280
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | |||||  |||||| ||||||||||||||||||||    
T  34739404 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcattt 34739305  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  34739304 gccagttgagctaggacttctagac 34739280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 45874179 - 45874055
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | ||||||||||||| |||||||||||| |||||||    
T  45874179 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggcattt 45874080  T
Q  262 gccggttgagctagaacttctagac 286  Q
    | | |||||||||| ||||||||||    
T  45874079 gtcagttgagctaggacttctagac 45874055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 164 - 287
Target Start/End: Original strand, 238464 - 238587
Alignment:
Q  164 gatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgc 263  Q
    ||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| |||||||   |||||||||||||||||||||||||||     
T  238464 gatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccaggtcatggcgtccagccttgcaatttcggcatttga 238563  T
Q  264 cggttgagctagaacttctagaca 287  Q
    | |||||||||| |||||||||||    
T  238564 cagttgagctaggacttctagaca 238587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 162 - 288
Target Start/End: Original strand, 28798392 - 28798518
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||    |||||| |||||| ||| | |||||| |||||| ||||||||||||||||||||    
T  28798392 tagatgaagtggtaatccactgaaaataaactcacacacaactgtaaggtcccgggttcgaacccgggtcacgacgtccggccttgcaatttcggcattt 28798491  T
Q  262 gccggttgagctagaacttctagacaa 288  Q
    ||| ||||| |||| ||||||||||||    
T  28798492 gccagttgaactaggacttctagacaa 28798518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 12735555 - 12735430
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   |||||||||||||| ||| | ||||||||||||  ||||| |||||| |||||||    
T  12735555 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcctgggttcgaacccgggtcacaacgtctggccttacaattttggcattt 12735456  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    | | |||||||||| |||||||||||    
T  12735455 gtcagttgagctagtacttctagaca 12735430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 26424862 - 26424985
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | |||||  |||||| ||||||||||||||||||||    
T  26424862 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtcc-gccttgcaatttcggcattt 26424960  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  26424961 gccagttgagctaggacttctagac 26424985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 54768436 - 54768560
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || ||  |||||| |||| |||   |||||||||||||| ||| | |||||  |||||| ||||||||||||||||||||    
T  54768436 tagatgaagtggtaatccactgaaaaaaaactcgcacacaactgtgaggtcctgggttcgaacccgggtcatgacgtccggccttgcaatttcggcattt 54768535  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  54768536 gccagttgagctaggacttctagac 54768560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 19673936 - 19674063
Alignment:
Q  165 atgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgcc 264  Q
    |||||||||||||||| || |||||||||| |||||||    ||||||| |||||| ||| ||||||||||||| | |||||||||||||  ||||| ||    
T  19673936 atgaagtggtaatccactgaaattaaactcgcacataattgtgaggtcccgggttcgaacccaggtcacaacgttcggccttgcaatttctacatttacc 19674035  T
Q  265 ggttgagctagaacttctagacaattaa 292  Q
     |||||||||  ||||||||||||||||    
T  19674036 agttgagctaagacttctagacaattaa 19674063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 162 - 289
Target Start/End: Complemental strand, 53457948 - 53457821
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| || ||| ||| | |||||  ||||||  |||||||||||||||||||    
T  53457948 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccggattcgaacccgggtcatgacgtccgaccttgcaatttcggcattt 53457849  T
Q  262 gccggttgagctagaacttctagacaat 289  Q
    ||| |||||||||| |||||||||||||    
T  53457848 gccagttgagctaggacttctagacaat 53457821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 12867965 - 12867840
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || ||||||||| || |||   ||| |||  ||||| ||||| |||||| ||||||  |||||||||||||||||||    
T  12867965 tagatgaagtggtaatccactgaaaataaactcactcacaactgtgagatcccaggttcgaactcgggtcacgacgtccgaccttgcaatttcggcattt 12867866  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    | | ||||||||||||||||||||||    
T  12867865 gacagttgagctagaacttctagaca 12867840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 161 - 292
Target Start/End: Complemental strand, 19814230 - 19814099
Alignment:
Q  161 atagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatt 260  Q
    |||||||||||||||||| | || ||||||||||||||||||    |||||||  ||||  ||| |||||||| |||||| ||||| ||||||| |||||    
T  19814230 atagatgaagtggtaatcaactgaaattaaactcacacataattgtgaggtcccaggtttgaacccaggtcacgacgtccggccttacaatttctgcatt 19814131  T
Q  261 tgccggttgagctagaacttctagacaattaa 292  Q
    |||| |||||||||  ||||||| ||||||||    
T  19814130 tgccagttgagctaagacttctaaacaattaa 19814099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 18257453 - 18257328
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || ||||||||| || |||   ||||||| ||| || ||| | | |||  |||||| ||||||||||||||||||||    
T  18257453 tagatgaagtggtaatccactgaaaataaactcacgcacaactgtgaggtcccgggctcgaacccggatcatgacgtccggccttgcaatttcggcattt 18257354  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    ||| |||||||||| |||||||||||    
T  18257353 gccagttgagctaggacttctagaca 18257328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 275
Target Start/End: Original strand, 23417487 - 23417600
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||    | |||| |||||| ||| | ||||||||||||| |||||||||||| |||||||    
T  23417487 tagatgaagtggtaatccactgaaaataaactcacacacaactgtaaagtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggcattt 23417586  T
Q  262 gccggttgagctag 275  Q
    ||| ||||||||||    
T  23417587 gccagttgagctag 23417600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 2864752 - 2864876
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||| || ||| |||||| |||||||| |||   ||||| || ||||| ||| | |||||| |||||| |||||||||||| |||||||    
T  2864752 tagatgaagtggtaaacctttgaaattaagctcacacacaactctgaggttctaggttcgaacccgggtcacgacgtcccgccttgcaatttaggcattt 2864851  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||| ||| ||||||||||    
T  2864852 gccagttgagttaggacttctagac 2864876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 163 - 283
Target Start/End: Complemental strand, 22608108 - 22607988
Alignment:
Q  163 agatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttg 262  Q
    ||||||||| ||||||||||| ||||||||||| ||| |||   ||||||| |||||| ||| | |||||| |||||| |||||||||||||| ||| ||    
T  22608108 agatgaagtagtaatccattgaaattaaactcagacacaactgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaatttcgacatctg 22608009  T
Q  263 ccggttgagctagaacttcta 283  Q
     | |||||||||| |||||||    
T  22608008 tcagttgagctaggacttcta 22607988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 23710334 - 23710461
Alignment:
Q  159 ttatagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggca 258  Q
    |||||||||||||||||||||| || |||||||||||||| ||||   ||||| |  ||||| ||  | |||||| |||||| |||||||||||||| ||    
T  23710334 ttatagatgaagtggtaatccactgaaattaaactcacacgtaactgtgaggttccaggttcgaatccgggtcacgacgtccggccttgcaatttcgaca 23710433  T
Q  259 tttgccggttgagctagaacttctagac 286  Q
    ||| || |||||||||  ||||||||||    
T  23710434 tttaccagttgagctatgacttctagac 23710461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 162 - 291
Target Start/End: Original strand, 29581048 - 29581176
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| |  ||||||||||||||| |||   ||||||  |||||| |||  ||||||| |||||| |||||||||||||||||| |    
T  29581048 tagatgaagtggtaatccacta-aattaaactcacacacaactgtgaggtctcgggttcgaacctaggtcacgacgtccggccttgcaatttcggcatct 29581146  T
Q  262 gccggttgagctagaacttctagacaatta 291  Q
    | |  ||||||||| |||||| ||||||||    
T  29581147 gacaattgagctaggacttcttgacaatta 29581176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 11278102 - 11277981
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||| ||| || |||||||||||||    ||   ||||||| |||||  ||| | |||||  | |||| ||||||||||||||||||||    
T  11278102 tagatgaagtggtaaaccactgaaattaaactcaca----actgtgaggtcccgggtttgaacccgggtcatgatgtccggccttgcaatttcggcattt 11278007  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    ||| |||||||||| |||||||||||    
T  11278006 gccagttgagctaggacttctagaca 11277981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 55214776 - 55214652
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||| ||||||||||||| || || |||||||| ||| |||   ||||||| |||||| ||| | |||||| |||||| |||||||||||| |||||||    
T  55214776 tagataaagtggtaatccactgaaaataaactcatacacaactgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaattttggcattt 55214677  T
Q  262 gccggttgagctagaacttctagac 286  Q
    | | |||||| ||  ||||||||||    
T  55214676 gacagttgagttaagacttctagac 55214652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 285
Target Start/End: Original strand, 516460 - 516583
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    |||||||||  ||||||||  | || |||||||||||| ||    ||| ||||||||||||||||  ||||||||||||| ||||||||||| |  ||||    
T  516460 tagatgaagctgtaatccaccgaaaataaactcacacacaattgtgagatcctgggttcaaactcgagtcacaacgtccaaccttgcaattttgatattt 516559  T
Q  262 gccggttgagctagaacttctaga 285  Q
    |  ||||||| |||||||||||||    
T  516560 gttggttgagttagaacttctaga 516583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 167 - 261
Target Start/End: Complemental strand, 39807963 - 39807869
Alignment:
Q  167 gaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    |||||||||||||| || ||||||||||||||| |||   ||||||| | |||| ||||| |||||| | |||  ||||||||||||||||||||    
T  39807963 gaagtggtaatccactgaaattaaactcacacacaactgtgaggtcccgagttcgaactcgggtcacgatgtctggccttgcaatttcggcattt 39807869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 284
Target Start/End: Complemental strand, 19225383 - 19225261
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||| ||| || || ||||||||| || ||    ||||||| |||||| ||| | | |||  |||||| || || ||||||||||||||    
T  19225383 tagatgaagtggtaaaccactgaaactaaactcacgcacaattgtgaggtcccgggttcgaacccggatcatgacgtccggctttacaatttcggcattt 19225284  T
Q  262 gccggttgagctagaacttctag 284  Q
    ||| |||||||||| ||||||||    
T  19225283 gccagttgagctaggacttctag 19225261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 32441168 - 32441212
Alignment:
Q  242 gccttgcaatttcggcatttgccggttgagctagaacttctagac 286  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||    
T  32441168 gccttgcaatttcgacatttgccagttgagctaggacttctagac 32441212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 3465808 - 3465755
Alignment:
Q  230 tcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttcta 283  Q
    ||||||||||| ||||||||||||||  ||||||  |||||||||| |||||||    
T  3465808 tcacaacgtccggccttgcaatttcgatatttgctagttgagctaggacttcta 3465755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 283
Target Start/End: Original strand, 52768305 - 52768425
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    |||||||| ||||||||||||| ||||||||||||||| |||   ||| |||| ||||| || ||   |||| ||||||  ||||||| |||| ||||||    
T  52768305 tagatgaa-tggtaatccattgaaattaaactcacacacaactgtgagatccttggttcgaattcgaatcacgacgtccgaccttgcagtttcagcattt 52768403  T
Q  262 gccggttgagctagaacttcta 283  Q
    ||| | | |||||| |||||||    
T  52768404 gccagataagctagcacttcta 52768425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 9977 - 10101
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| ||| | ||||||| |||||| ||| | ||| || |||||| ||||||||||||||||||||    
T  9977 tagatgaagtggtaatccactgaaaataaactcacacacaactatgaggtcccgggttcgaacccgggttacgacgtccggccttgcaatttcggcattt 10076  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  10077 gccagttgagctaggacttctagac 10101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 56605 - 56481
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | |||||||||||||  |||||||||||||||||||    
T  56605 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccgaccttgcaatttcggcattt 56506  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  56505 gccagttgagctaggacttctagac 56481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 33621618 - 33621492
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||| ||| || ||||||||||||||| |||   ||||||| |||||| ||| | |||||  |||||| ||||||||||||||||||||    
T  33621618 tagatgaagtggtaaaccactgaaattaaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcattt 33621519  T
Q  262 gccggttgagctagaacttctagacaa 288  Q
    ||| |||||||||| ||||||||||||    
T  33621518 gccagttgagctaggacttctagacaa 33621492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 33704337 - 33704216
Alignment:
Q  165 atgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgcc 264  Q
    |||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | |||||  |||||| |||||||||||||||||||||||    
T  33704337 atgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgcc 33704238  T
Q  265 ggttgagctagaacttctagac 286  Q
     |||||||||| ||||||||||    
T  33704237 agttgagctaggacttctagac 33704216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 21037414 - 21037291
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    |||||||||||||||| || || || |||||||||||| |||   ||||||| || ||| ||| |  |||||||||||| ||||||||||||| ||||||    
T  21037414 tagatgaagtggtaattcactgaaaataaactcacacacaactgtgaggtcc-ggattcgaacccgagtcacaacgtccggccttgcaatttcagcattt 21037316  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||||||||||||||    
T  21037315 gccagttgagctagaacttctagac 21037291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 163 - 286
Target Start/End: Complemental strand, 21000815 - 21000692
Alignment:
Q  163 agatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttg 262  Q
    |||||||||||||| ||| || |||||||| |||||| ||    ||||||| |||||| ||| |||||||  |||| | |||||||||||||||||||||    
T  21000815 agatgaagtggtaaaccactgaaattaaacccacacacaattgtgaggtcccgggttcgaacccaggtcatgacgtacggccttgcaatttcggcatttg 21000716  T
Q  263 ccggttgagctagaacttctagac 286  Q
    || |||||||||| ||||||||||    
T  21000715 ccagttgagctaggacttctagac 21000692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 4464251 - 4464127
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||| ||| || ||||||||||||||| |||   |||||||  ||||| ||| | | |||  |||||| ||||||||||||||||||||    
T  4464251 tagatgaagtggtaaaccactgaaattaaactcacacacaactgtgaggtcccaggttcgaacccggatcatgacgtccggccttgcaatttcggcattt 4464152  T
Q  262 gccggttgagctagaacttctagac 286  Q
    | | ||||| |||||||||||||||    
T  4464151 gtcagttgaactagaacttctagac 4464127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 12252144 - 12252023
Alignment:
Q  165 atgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgcc 264  Q
    |||||||||||| |||||  ||||||||||||||| ||| | ||||||  |||||||||| | |||||| || ||| | |||||||| |||| ||||| |    
T  12252144 atgaagtggtaagccattaaaattaaactcacacacaactatgaggtctcgggttcaaaccctggtcacgacatccggtcttgcaatctcggtatttgtc 12252045  T
Q  265 ggttgagctagaacttctagac 286  Q
     |||||||||| ||||||||||    
T  12252044 agttgagctaggacttctagac 12252023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 28323056 - 28322932
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||| ||| || || |||||||||||| ||    ||||||| |||||| ||| | | |||  |||||| ||||| ||||||||||||||    
T  28323056 tagatgaagtggtaaaccactgaaactaaactcacacacaattgtgaggtcccgggttcgaacccggatcatgacgtccggccttacaatttcggcattt 28322957  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  28322956 gccagttgagctaggacttctagac 28322932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 35218698 - 35218756
Alignment:
Q  228 ggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctagac 286  Q
    ||||||||||||| |||||||||||| |||||||||| |||||||||| ||||||||||    
T  35218698 ggtcacaacgtccggccttgcaattttggcatttgccagttgagctaggacttctagac 35218756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 28592186 - 28592246
Alignment:
Q  228 ggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctagacaa 288  Q
    |||||||||||||||||||  |||||||||||||||| ||| |||||| ||||||||||||    
T  28592186 ggtcacaacgtccagccttataatttcggcatttgccagttaagctaggacttctagacaa 28592246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 361135 - 361010
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||| ||||||| || ||||||||||||| |||||   ||||| | |||||| ||| |  ||||| | || | |||||||||||| |||||||    
T  361135 tagatgaagtgttaatccactgaaattaaactcacatataactgtgaggttccgggttcgaacccgtgtcacgatgttcggccttgcaattttggcattt 361036  T
Q  262 gccggttgagctagaacttctagaca 287  Q
    ||| | |||||||  |||||||||||    
T  361035 gccagatgagctaagacttctagaca 361010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 263
Target Start/End: Complemental strand, 19145594 - 19145494
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || ||||||| ||||||| ||    ||||||| |||||||||  | |||||| |||||| ||||||||||||| ||||||    
T  19145594 tagatgaagtggtaatccactgaaattaaattcacacacaattgtgaggtcccgggttcaaa-acgggtcacgacgtccggccttgcaatttcagcattt 19145496  T
Q  262 gc 263  Q
    ||    
T  19145495 gc 19145494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 287
Target Start/End: Complemental strand, 2959272 - 2959148
Alignment:
Q  163 agatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttg 262  Q
    ||||||||||||| ||||  | ||||||||||||||| |||   ||||||  |||||| |||  | ||||| |  ||| |||||||||||||||||||||    
T  2959272 agatgaagtggtattccacggaaattaaactcacacacaactgtgaggtctcgggttcgaacctaagtcacgatatccggccttgcaatttcggcatttg 2959173  T
Q  263 ccggttgagctagaacttctagaca 287  Q
    |  |||||| ||| |||||||||||    
T  2959172 ctagttgagttaggacttctagaca 2959148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 261
Target Start/End: Complemental strand, 16518545 - 16518448
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    |||||||| |||||||||| || || ||||||||||||  ||   ||| |||||||||| ||| |||||||||||||||  ||||||||||| |||||||    
T  16518545 tagatgaaatggtaatccactgaaaataaactcacaca--actgtgagctcctgggttcgaacccaggtcacaacgtccgaccttgcaattttggcattt 16518448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 24619083 - 24619207
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||| | || ||||||||||||||| ||  | ||||||  ||| || ||||| |||||| |||| | ||||| |||||| | |||||    
T  24619083 tagatgaagtggtaatcgactgaaattaaactcacacacaattatgaggtcacgggatcgaactcgggtcacgacgttcggccttacaattttgacattt 24619182  T
Q  262 gccggttgagctagaacttctagac 286  Q
    | | |||||| ||| ||||||||||    
T  24619183 gtcagttgagttaggacttctagac 24619207  T

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Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 207 - 286
Target Start/End: Complemental strand, 33255567 - 33255489
Alignment:
Q  207 gaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctagac 286  Q
    |||||||  ||||| ||||||||||| ||||||||||||| |||||| |||||||||| | |||||||| |||| |||||    
T  33255567 gaggtcccaggttcgaactcaggtca-aacgtccagccttacaattttggcatttgccagctgagctaggacttatagac 33255489  T

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Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 3057458 - 3057402
Alignment:
Q  230 tcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctagac 286  Q
    ||||||||||||||||| |||||||| |||||  |  ||||||||||||||||||||    
T  3057458 tcacaacgtccagccttacaatttcgacatttatcaattgagctagaacttctagac 3057402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 14939190 - 14939146
Alignment:
Q  244 cttgcaatttcggcatttgccggttgagctagaacttctagacaa 288  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||||    
T  14939190 cttgcaatttcggcatttgccagttgagttaggacttctagacaa 14939146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 286
Target Start/End: Complemental strand, 11572106 - 11572008
Alignment:
Q  188 taaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatttgccggttgagctagaacttctagac 286  Q
    |||||||||||| |||   ||||||| |||||| ||| | |||||| |||||  ||||| ||||||| |||||||   |||||||||| ||||||||||    
T  11572106 taaactcacacacaactgtgaggtcccgggttcgaacccgggtcacgacgtctggccttacaatttctgcatttgttagttgagctaggacttctagac 11572008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1348 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold1348
Description:

Target: scaffold1348; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 866 - 990
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | |||||  |||||| ||||||||||||||||||||    
T  866 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcattt 965  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  966 gccagttgagctaggacttctagac 990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 13955 - 14079
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | | ||||||||||| ||||||||||||||| ||||    
T  13955 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccggatcacaacgtccggccttgcaatttcggtattt 14054  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  14055 gccagttgagctaggacttctagac 14079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 19635 - 19759
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || || |||||||||||| |||   ||||||| |||||| ||| | | ||||||||||| ||||||||||||||| ||||    
T  19635 tagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccggatcacaacgtccggccttgcaatttcggtattt 19734  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  19735 gccagttgagctaggacttctagac 19759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 34943 - 34822
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaa-ctcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcatt 260  Q
    ||||||||||||||||||| || ||||||| |||||| | |||  ||||||||||| ||| ||| || ||||| |||||| |||||||||||||||||||    
T  34943 tagatgaagtggtaatccactgaaattaaaactcacatacaactgcgaggtcctggattcgaacccatgtcacgacgtccggccttgcaatttcggcatt 34844  T
Q  261 tgccggttgagctagaacttct 282  Q
    |||| |||||||||| ||||||    
T  34843 tgccagttgagctaggacttct 34822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 8947 - 9071
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    |||||||||||||||  || || ||||||||||||||| |||   |||||||| ||||| ||| |   ||| ||||||| ||||| ||||||||||||||    
T  8947 tagatgaagtggtaaatcactgaaattaaactcacacacaactgtgaggtcctaggttcgaacccgaatcataacgtcccgccttacaatttcggcattt 9046  T
Q  262 gccggttgagctagaacttctagac 286  Q
     || |||||||||||||||||||||    
T  9047 accagttgagctagaacttctagac 9071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 162 - 275
Target Start/End: Complemental strand, 22287 - 22174
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||||||| || ||||||||||||||  |||   ||||||| ||| || ||| | |||||| |||||| ||||| ||||||||||||||    
T  22287 tagatgaagtggtaatccactgaaattaaactcacacgcaactgtgaggtcccgggctcgaacccgggtcacgacgtccggccttacaatttcggcattt 22188  T
Q  262 gccggttgagctag 275  Q
    | | ||||||||||    
T  22187 gtcagttgagctag 22174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 114376 - 114252
Alignment:
Q  162 tagatgaagtggtaatccattggaattaaactcacacataaccacgaggtcctgggttcaaactcaggtcacaacgtccagccttgcaatttcggcattt 261  Q
    ||||||||||||||| ||| || || |||||||||||| ||    ||||||| |||||| ||| | | |||  |||||| ||||| ||||||||||||||    
T  114376 tagatgaagtggtaaaccactgaaactaaactcacacacaattgtgaggtcccgggttcgaacccggatcatgacgtccggccttacaatttcggcattt 114277  T
Q  262 gccggttgagctagaacttctagac 286  Q
    ||| |||||||||| ||||||||||    
T  114276 gccagttgagctaggacttctagac 114252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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