View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17911_low_3 (Length: 485)

Name: NF17911_low_3
Description: NF17911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17911_low_3
NF17911_low_3
[»] chr1 (2 HSPs)
chr1 (186-468)||(33987368-33987650)
chr1 (9-186)||(33987116-33987293)
[»] chr2 (15 HSPs)
chr2 (186-404)||(8974165-8974383)
chr2 (258-468)||(9020231-9020442)
chr2 (305-468)||(8995828-8995992)
chr2 (305-468)||(8987895-8988058)
chr2 (304-463)||(9026206-9026366)
chr2 (187-266)||(8987815-8987894)
chr2 (187-266)||(8995748-8995827)
chr2 (107-186)||(8991782-8991861)
chr2 (107-186)||(9020042-9020121)
chr2 (107-189)||(8995614-8995696)
chr2 (335-376)||(9014897-9014938)
chr2 (214-265)||(9026154-9026205)
chr2 (107-164)||(8984463-8984520)
chr2 (107-154)||(8973987-8974034)
chr2 (142-186)||(8972980-8973024)


Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 186 - 468
Target Start/End: Original strand, 33987368 - 33987650
Alignment:
Q  186 agtttataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagccatttctatttcgaccctttagcagaattttgatctctgaggaggg 285  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987368 agtttataaactaaaaagtaaatgcaacaatgcagctaaattaagttgaatagccatttctatttcgaccctttagcagaattttgatctctgaggaggg 33987467  T
Q  286 ctcagccacaaaataaatcacaagaaataaattgttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttga 385  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987468 ctcagccaccaaaaaaatcacaagaaataaattgttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttga 33987567  T
Q  386 aattgatcaaccaaaactgtagaagttttaatttgccaaaagatctgcattattaaaaactccacaaaacaatagctgtctgt 468  Q
    ||||||||||||||||||||| ||||||||| ||||| |||  ||| | ||||||||||||||| ||||||||||||||||||    
T  33987568 aattgatcaaccaaaactgtataagttttaaattgccgaaatgtctacgttattaaaaactccataaaacaatagctgtctgt 33987650  T

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Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 33987116 - 33987293
Alignment:
Q  9 gagaagaacatccttgtttccaattcagaagaggtattatttcctttgcttcactttgctgcattttagtcctttctctctttgctgtatttttatcctt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987116 gagaagaacatccttgtttccaattcagaagaggtattatttcctttgcttcactttgctgcattttagtcctttctctctttgctgtatttttatcctt 33987215  T
Q  109 ttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgttatga 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33987216 ttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgctatga 33987293  T

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Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 186 - 404
Target Start/End: Original strand, 8974165 - 8974383
Alignment:
Q  186 agtttataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagccatttctatttcgaccctttagcagaattttgatctctgaggaggg 285  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  8974165 agttcataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagctatttctattttgaccctttagcagaattttgatctctgaggaggg 8974264  T
Q  286 ctcagccacaaaataaatcacaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttg 384  Q
      || || | ||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  8974265 accaacctccaaa-aaaacacaagaaataaattgcttaacctgcaacaaaggcataaactattttgcagaaacttcatttttcaaataaattcttgtttg 8974363  T
Q  385 aaattgatcaaccaaaactg 404  Q
    ||||||||||||||||||||    
T  8974364 aaattgatcaaccaaaactg 8974383  T

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Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 258 - 468
Target Start/End: Original strand, 9020231 - 9020442
Alignment:
Q  258 ttagcagaattttgatctctgaggagggctcagccacaaaataaat-cacaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaa 355  Q
    ||||||| |||||||||||||||| ||| ||||||| |||| |||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9020231 ttagcagtattttgatctctgaggggggatcagccataaaaaaaaaacacaagaaataaattgcttaacctgcaacaaaggcataaattattttgcagaa 9020330  T
Q  356 acttgatttttcaaataaattcctgtttgaaattgatcaaccaaaactgtagaagttttaatttgccaaaagatctgcattattaaaaactccacaaaac 455  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||| | | |||||||||||||||  ||| |||||||||||||||||||||||    
T  9020331 actttatttttcaaataaattcctgtttgaaattgattaaccaaaactgtatatg-tttaatttgccaaaatgtctacattattaaaaactccacaaaac 9020429  T
Q  456 aatagctgtctgt 468  Q
    |||||||||||||    
T  9020430 aatagctgtctgt 9020442  T

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Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 305 - 468
Target Start/End: Original strand, 8995828 - 8995992
Alignment:
Q  305 acaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttgaaattgatcaaccaaaact 403  Q
    ||||||||||||||| ||||||||||||||   |||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||    
T  8995828 acaagaaataaattgcttaacctgcaacaataacataaattattttgtagaaactctatttttcaaataaattcctatttgaaattgatcaaccaaaact 8995927  T
Q  404 gtagaagttttaatttgccaaaagatctgcattattaaaaactccacaaaacaatagctgtctgt 468  Q
    ||| |||||||||||||||||||  ||| ||||||||||||||||||| |||||||||| |||||    
T  8995928 gtataagttttaatttgccaaaatgtctacattattaaaaactccacataacaatagctttctgt 8995992  T

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Target: chr2; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 305 - 468
Target Start/End: Original strand, 8987895 - 8988058
Alignment:
Q  305 acaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttgaaattgatcaaccaaaact 403  Q
    ||||||||||||||| |||||||||||||| | |||||||||||||| |||||||  ||||||||||||| ||||| |||||||||||||||||||||||    
T  8987895 acaagaaataaattgcttaacctgcaacaatgacataaattattttgtagaaactctatttttcaaataagttcctatttgaaattgatcaaccaaaact 8987994  T
Q  404 gtagaagttttaatttgccaaaagatctgcattattaaaaactccacaaaacaatagctgtctgt 468  Q
    ||  ||||||||||||||| |||  ||| ||||||| ||||||||||||||||||||||||||||    
T  8987995 gtgtaagttttaatttgccgaaatgtctacattatt-aaaactccacaaaacaatagctgtctgt 8988058  T

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Target: chr2; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 304 - 463
Target Start/End: Original strand, 9026206 - 9026366
Alignment:
Q  304 cacaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttgaaattgatcaaccaaaac 402  Q
    |||||||||||||||| ||  |||||||||| | |||||||||||||| |||||||  |||||||||||||||  || |||||||||||| |||||||||    
T  9026206 cacaagaaataaattgcttctcctgcaacaatgacataaattattttgtagaaactctatttttcaaataaatatctatttgaaattgattaaccaaaac 9026305  T
Q  403 tgtagaagttttaatttgccaaaagatctgcattattaaaaactccacaaaacaatagctg 463  Q
    |||| |||| |||||||||| |||  | | |||||||||||||||||||||||||||||||    
T  9026306 tgtataagtcttaatttgccgaaatgtttacattattaaaaactccacaaaacaatagctg 9026366  T

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Target: chr2; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 187 - 266
Target Start/End: Original strand, 8987815 - 8987894
Alignment:
Q  187 gtttataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagccatttctatttcgaccctttagcagaa 266  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||    
T  8987815 gtttataaactaaaaagtaaatgcaacaattcagctaaatttagttgaacaaccatttctatttcgacactttagcagaa 8987894  T

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Target: chr2; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 187 - 266
Target Start/End: Original strand, 8995748 - 8995827
Alignment:
Q  187 gtttataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagccatttctatttcgaccctttagcagaa 266  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||    
T  8995748 gtttataaactaaaaagtaaatgcaacaattcagctaaatttagttgaacaaccatttctatttcgacactttagcagaa 8995827  T

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Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 8991782 - 8991861
Alignment:
Q  107 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgttatga 186  Q
    |||||||||||||||| || ||||||||||||||||||||| |||||||||| |||||| | ||||| ||||||||||||    
T  8991782 ttttctaatgtctgcatataatgctgcagacttgacttgattgtttctagaaatggtgccagtgcagtgacttgttatga 8991861  T

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Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 9020042 - 9020121
Alignment:
Q  107 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgttatga 186  Q
    |||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| ||||| |||||  |||| ||||||    
T  9020042 ttttctaatgtctgcatatgatgctgcatacttgacttgattgtttctagaagtgctgcaaatgcagtcactttttatga 9020121  T

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Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 8995614 - 8995696
Alignment:
Q  107 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgttatgagtt 189  Q
    ||||||||| || | | |||||||||||||||||||||||| ||||||||||  ||| ||||||||| |||||||||||||||    
T  8995614 ttttctaatttcagtatatgatgctgcagacttgacttgattgtttctagaaacggtccaactgcagtgacttgttatgagtt 8995696  T

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Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Original strand, 9014897 - 9014938
Alignment:
Q  335 ggcataaattattttgcagaaacttgatttttcaaataaatt 376  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9014897 ggcataaattattttgcagaaacttgatttttcaaataaatt 9014938  T

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Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 9026154 - 9026205
Alignment:
Q  214 aattcagctaaattaagttgaatagccatttctatttcgaccctttagcaga 265  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||||    
T  9026154 aattcagctaaatttagttgaacaaccatttctatttcgaccctttagcaga 9026205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 8984463 - 8984520
Alignment:
Q  107 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtg 164  Q
    ||||||||||||| || ||||||||||| ||| |||||||| ||||||||||||||||    
T  8984463 ttttctaatgtcttcatatgatgctgcaaactagacttgattgtttctagaagtggtg 8984520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 8973987 - 8974034
Alignment:
Q  107 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttct 154  Q
    |||||||||||||| | ||||||||||||||||||||| || ||||||    
T  8973987 ttttctaatgtctgtatatgatgctgcagacttgacttcattgtttct 8974034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 8972980 - 8973024
Alignment:
Q  142 cttgatcgtttctagaagtggtgcaactgcagcgacttgttatga 186  Q
    |||||| |||||||||| |||||||| ||||| ||||||||||||    
T  8972980 cttgattgtttctagaaatggtgcaagtgcagtgacttgttatga 8973024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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