View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17911_low_4 (Length: 476)
Name: NF17911_low_4
Description: NF17911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17911_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 10 - 460
Target Start/End: Original strand, 34980843 - 34981287
Alignment:
| Q |
10 |
agaagcaaaggtcgacggaattttacaacattgtcccaagagcaagaattctaggaagcttttcagatggagtagaaggaagctaggatnnnnnnnnntg |
109 |
Q |
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| T |
34980843 |
agaatcaatggtcgacggaattttacaacattgtcccaagagcaagaattctaggaagcttttcagatggagtagaaggaagctaggataaaacaaa-tg |
34980941 |
T |
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| Q |
110 |
catgcggtaagttctataatatatatgttattaatttttctttaagaactttgttaacaagaaaattgagaaaacaaagaatatcatcaagttactttat |
209 |
Q |
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| T |
34980942 |
catgtggtaagttctataatat----gttattaatttttctttaagaactttgttaacaagaaaattgagaaaacaaagaatatcatcaagttactttat |
34981037 |
T |
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| Q |
210 |
gatatgatattgatagtaatttataccatgaactaatgcattgcaatcgatgagatttttctccaacagttctatgacttttctgacttgtttgaataat |
309 |
Q |
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| T |
34981038 |
gatatgatactgatagtaatttataccatgaactaatgctttgcaatcgatgagatttttctccaacagttctatgacttttctgacttgtttgaataat |
34981137 |
T |
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| Q |
310 |
atatatttggaagatatcttctctattatacttagcatttaattctgtgagaaaagtgggagttttttcttactaaaaacgtgggattgtttgtggatga |
409 |
Q |
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| T |
34981138 |
atatatttggaagatatcttctctattatactcagcatttaattctgtgagaaaagtgggagttttttcttactaaaaacgtgggattgtttgtggatga |
34981237 |
T |
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| Q |
410 |
actaatcatatcatgatatattgtgtcaaaagattattttgaaggattatg |
460 |
Q |
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| T |
34981238 |
actaatcatatca-gatatattgtgtcaaaagattattttgaaggattatg |
34981287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 34985551 - 34985630
Alignment:
| Q |
108 |
tgcatgcggtaagttctataatatatatgttattaatttttctttaagaactttgttaacaagaaaattgagaaaacaaagaat |
191 |
Q |
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| T |
34985551 |
tgcatgtggtaagttctataatat----gctattaattttcctttaagaaatttgttaataaagaaattgagaaaacaaagaat |
34985630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 34985467 - 34985525
Alignment:
| Q |
10 |
agaagcaaaggtcgacggaattttacaacattgtcccaagagcaagaattctaggaagc |
68 |
Q |
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| T |
34985467 |
agaatcaatggtcgacggcattttacaacattgtctcaggagcaaggattctaggaagc |
34985525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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