View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17911_low_5 (Length: 460)
Name: NF17911_low_5
Description: NF17911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17911_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Complemental strand, 13877368 - 13876934
Alignment:
| Q |
19 |
gctagcatatctcatatttgaaactatatgtcacttcctcccagaaaactccgattactaagaccccatcgccctaagaaccggagggttaacaccaata |
118 |
Q |
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| T |
13877368 |
gctagcatatctcatatttgaaactatatgtcacttcctcccagaaaactccgattactaagaccccatcgccctaagaaccggagggttaacaccaata |
13877269 |
T |
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| Q |
119 |
caaaaagtgtcaccaacttcttttaaaacaaagtaaaatcccactgttatgaaaatcaaagtaaaatgttctgagaaggttgggaaaaggaaactaatta |
218 |
Q |
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| T |
13877268 |
caaaaagtgtcaccaacttcttttaaaacaaagtaaaatcccactgttatgaaaatcaaagtaaaatgttctgagaaggttgggaaaaggaaactaatta |
13877169 |
T |
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| Q |
219 |
cactaacctctattaaggaacttgcgctcagaattgatgcatattacatgattcacattacatattcctttttagtttctccattgaagtacgtcgaaag |
318 |
Q |
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| T |
13877168 |
cactaacctctattaaggaacttgcgctcagaattgatgcatattacatgattcacattacatattcctttttagtttctccattgaagtacgtcgaaag |
13877069 |
T |
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| Q |
319 |
tttataccctaccatccaagtcacaaatgatataagtgctttctgtggtaaatctaaaccactgaacaactgacccattttctccaacatagataagttc |
418 |
Q |
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| T |
13877068 |
tttataccttaccatccaagtcacaaatgatataagtgctttctgtggtaaatctaaaccactgaacaactgacccattttctccaacatagataagttc |
13876969 |
T |
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| Q |
419 |
taagtcataaacaatttcagattttcattttcttc |
453 |
Q |
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| T |
13876968 |
taagtcataaacaatttcagattttcatattcttc |
13876934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 171 - 437
Target Start/End: Complemental strand, 13864552 - 13864286
Alignment:
| Q |
171 |
aaatcaaagtaaaatgttctgagaaggttgggaaaaggaaactaattacactaacctctattaaggaacttgcgctcagaattgatgcatattacatgat |
270 |
Q |
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| T |
13864552 |
aaatcaaagtaatatgttctgagaaggttgggaaaaggaaactaattacactaacctcaattaaggaacttgcgctcagaattgatgcatattacatgat |
13864453 |
T |
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| Q |
271 |
tcacattacatattcctttttagtttctccattgaagtacgtcgaaagtttataccctaccatccaagtcacaaatgatataagtgctttctgtggtaaa |
370 |
Q |
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| T |
13864452 |
tcacattacatattcctttttagtttctccattgaagtacgtcgaaagtttataccttaccatccaagtcacaaatgatataagtgctttctgtggtaaa |
13864353 |
T |
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| Q |
371 |
tctaaaccactgaacaactgacccattttctccaacatagataagttctaagtcataaacaatttca |
437 |
Q |
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| T |
13864352 |
tctaaaccactgaacaactgaaccattttctcccacatagacaagttctaagtcataaacaatttca |
13864286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 175 - 262
Target Start/End: Complemental strand, 13895173 - 13895086
Alignment:
| Q |
175 |
caaagtaaaatgttctgagaaggttgggaaaaggaaactaattacactaacctctattaaggaacttgcgctcagaattgatgcatat |
262 |
Q |
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| T |
13895173 |
caaagtaaaatgttatgagaatgttggaaaaaggaaactaattacactaaactctattaaggaacttgcactcagaattgatgcatat |
13895086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 13895300 - 13895163
Alignment:
| Q |
20 |
ctagcatatctcatatttgaaactatatgtcacttcctcccagaaaact-ccgattactaagaccccatcgccctaagaaccggagggttaacaccaata |
118 |
Q |
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| T |
13895300 |
ctagcatatctcatgtttgaagctatatgtcacttcctcgtggacaactacggattactaagaccccgttgccttaggaaccggatggttaacaccaaca |
13895201 |
T |
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| Q |
119 |
caaaaagtgtcaccaacttcttttaaaacaaagtaaaat |
157 |
Q |
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| T |
13895200 |
-aaaaaatgtcacttccttcttttaaaacaaagtaaaat |
13895163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 446
Target Start/End: Complemental strand, 13894966 - 13894913
Alignment:
| Q |
393 |
ccattttctccaacatagataagttctaagtcataaacaatttcagattttcat |
446 |
Q |
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| T |
13894966 |
ccatattctctaacatagacaagttataagtcataaacaatttcacattttcat |
13894913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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