View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17911_low_6 (Length: 443)

Name: NF17911_low_6
Description: NF17911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17911_low_6
NF17911_low_6
[»] chr5 (2 HSPs)
chr5 (81-427)||(41221975-41222322)
chr5 (8-83)||(41222675-41222752)
[»] chr8 (1 HSPs)
chr8 (99-228)||(13375861-13375997)
[»] chr6 (5 HSPs)
chr6 (291-401)||(16654093-16654203)
chr6 (99-228)||(16985223-16985359)
chr6 (320-396)||(16569680-16569756)
chr6 (116-153)||(16795006-16795043)
chr6 (168-228)||(16779031-16779091)
[»] chr3 (3 HSPs)
chr3 (162-228)||(38942998-38943064)
chr3 (117-228)||(7055522-7055640)
chr3 (162-228)||(38941597-38941663)
[»] scaffold0133 (1 HSPs)
scaffold0133 (188-228)||(6375-6415)


Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 81 - 427
Target Start/End: Complemental strand, 41222322 - 41221975
Alignment:
Q  81 ttgctgggatcactacttcaacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaagctagcgaccttatctttggaaactcac 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  41222322 ttgctgggatcactacttcaacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaatctagcgaccttatctttcgaaactcac 41222223  T
Q  181 tgatatgtaattcttgaagagaagtcatggcaccctaccagtccggcagcggcgggcatcagcagttatgtgactaaccataacatcatgcatgcatttt 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41222222 tgatatgtaattcttgaagagaagtcatggcaccctaccagtccggcagcggcgggcatcagcagttatgtgactaaccataacatcatgcatgcatttt 41222123  T
Q  281 gacacaggggtaacagatatccaaattcatagtgagggtaagattaaagacctgaagtgtatcagaatccagtacctgacattgtttaattttggaaagc 380  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41222122 gacacatgggtaacagatatccaaattcatagtgagggcaagattaaagacctgaagtgtatcagaatccagtacctaacattgtttaattttggaaagc 41222023  T
Q  381 ttgccat-agtaacaaacaactttgatcatgatttggtttcataataa 427  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||    
T  41222022 ttgccataagtaacgaacaactttgatcatgatttggtttcataataa 41221975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 41222752 - 41222675
Alignment:
Q  8 ccaagaatatttttataaagtgaccatatatttaagatatatat--cgtgtcacaataaatttacattacattaattg 83  Q
    |||| ||||||||||| |||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  41222752 ccaaaaatatttttatgaagtgaccatatatttaagatatatatatcgtgttacaataaatttacattacattaattg 41222675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 99 - 228
Target Start/End: Original strand, 13375861 - 13375997
Alignment:
Q  99 caacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaagc-------tagcgaccttatctttggaaactcactgatatgtaat 191  Q
    |||||||||| || |||||||||||||| |||||| ||||||||||||||||||||       ||| ||||||| ||| |||||| ||||||| | ||||    
T  13375861 caacatagagcaactaacaatacttaacctttgcaagtttcggagttgctgaaagctgtctggtagtgaccttaacttcggaaacccactgatttttaat 13375960  T
Q  192 tcttgaagagaagtcatggcaccctaccagtccggca 228  Q
      |||||||| ||||||||||||| ||||||| ||||    
T  13375961 ctttgaagagtagtcatggcacccaaccagtctggca 13375997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 291 - 401
Target Start/End: Original strand, 16654093 - 16654203
Alignment:
Q  291 taacagatatccaaattcatagtgagggtaagattaaagacctgaagt-gtatcagaatccagtacctgacattgtttaattttggaaagcttgccatag 389  Q
    |||||||||| |||||| |||||||||| |||||| ||||||| |||| ||||| ||||| ||||||| ||||||||| |||||  ||| |||| || ||    
T  16654093 taacagatatgcaaatttatagtgagggcaagattgaagacct-aagtagtatcggaatcgagtacctaacattgtttgattttcaaaaacttgtcacag 16654191  T
Q  390 taacaaacaact 401  Q
    ||||||||||||    
T  16654192 taacaaacaact 16654203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 228
Target Start/End: Original strand, 16985223 - 16985359
Alignment:
Q  99 caacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaagct-------agcgaccttatctttggaaactcactgatatgtaat 191  Q
    |||||||| | ||| || |||| ||||||||||||  ||||||||||||||||||||       || || |||| ||||||||| ||| |||| | ||||    
T  16985223 caacatagggcaatcaataataattaacttttgcaaatttcggagttgctgaaagctgtctggtagtgaacttaactttggaaagtcaatgatgtataat 16985322  T
Q  192 tcttgaagagaagtcatggcaccctaccagtccggca 228  Q
    |||||||||||||||||||||||| | ||||| ||||    
T  16985323 tcttgaagagaagtcatggcacccaaacagtctggca 16985359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 396
Target Start/End: Complemental strand, 16569756 - 16569680
Alignment:
Q  320 aagattaaagacctgaagtgtatcagaatccagtacctgacattgtttaattttggaaagcttgccatagtaacaaa 396  Q
    |||||| ||||||||||||||||||||||  |||| ||  ||||| |||||||| |||||||||||| |||||||||    
T  16569756 aagattgaagacctgaagtgtatcagaatttagtatctatcattgattaatttttgaaagcttgccaaagtaacaaa 16569680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 16795006 - 16795043
Alignment:
Q  116 caatacttaacttttgcatgtttcggagttgctgaaag 153  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  16795006 caatacttaactcttgcaagtttcggagttgctgaaag 16795043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 16779031 - 16779091
Alignment:
Q  168 tttggaaactcactgatatgtaattcttgaagagaagtcatggcaccctaccagtccggca 228  Q
    ||||||||||||  ||| | |||| ||||||||||||||||||||||| | ||||| ||||    
T  16779031 tttggaaactcatagatgtctaatacttgaagagaagtcatggcacccaaacagtctggca 16779091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 38942998 - 38943064
Alignment:
Q  162 cttatctttggaaactcactgatatgtaattcttgaagagaagtcatggcaccctaccagtccggca 228  Q
    |||| ||| |||||| ||||||| ||||||  |||||||||||||||||||||| ||||||||||||    
T  38942998 cttaacttcggaaacccactgatttgtaatctttgaagagaagtcatggcacccaaccagtccggca 38943064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 228
Target Start/End: Complemental strand, 7055640 - 7055522
Alignment:
Q  117 aatacttaacttttgcatgtttcggagttgctgaaagct-------agcgaccttatctttggaaactcactgatatgtaattcttgaagagaagtcatg 209  Q
    ||||||||||||||| | |||| |||||||||||| |||       |||||||||| | | ||||||  |  ||| |||||| |||||||||||||||||    
T  7055640 aatacttaacttttgtaagttttggagttgctgaatgctgtctggtagcgaccttaacatcggaaacctagagatttgtaatacttgaagagaagtcatg 7055541  T
Q  210 gcaccctaccagtccggca 228  Q
    |||||| ||||||||||||    
T  7055540 gcacccaaccagtccggca 7055522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 38941663 - 38941597
Alignment:
Q  162 cttatctttggaaactcactgatatgtaattcttgaagagaagtcatggcaccctaccagtccggca 228  Q
    |||| ||||||||||| |  ||| |||||| ||||||||||||||||||||||| ||||||| ||||    
T  38941663 cttaactttggaaacttaaggatgtgtaatacttgaagagaagtcatggcacccaaccagtctggca 38941597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 6375 - 6415
Alignment:
Q  188 taattcttgaagagaagtcatggcaccctaccagtccggca 228  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  6375 taatacttgaagagaagtcatggcacccaaccagtccggca 6415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University