View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17911_low_7 (Length: 415)
Name: NF17911_low_7
Description: NF17911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17911_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 398
Target Start/End: Original strand, 39179719 - 39180102
Alignment:
| Q |
16 |
atgtcgaaaacaaaaaggaatccgccggcttttttgtttcagttggtgttttacatttaacttacccaccaagttattattagatcttatcttatgaagt |
115 |
Q |
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| T |
39179719 |
atgtcgaaaacaaaaaggaatcggccggcttttttgtttcagttggtgttttacatttaacttacccaccaagttattattagatcttatcttatgaagc |
39179818 |
T |
|
| Q |
116 |
tgacttgagattagcatagcagaaaaagtcttgtgcttacaaaggaaaaaacaatactcttagttaaatttgctttcagacctttcactgagtatattta |
215 |
Q |
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| T |
39179819 |
tgacttgagattagcatagcagaaaaagtcttgtgcttacaaaggaaaaaacaatactctgagttaaatttgctttcagacctttcactgagtatattta |
39179918 |
T |
|
| Q |
216 |
tatatatgcttcaatccctttctagtcactggtcatgtcaaattctttggctcttctctcttgtctttatctttgtttcatgttcattgtcactttcagc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39179919 |
tatatatgcttcaatccctttctagtcactggtcatgtcaaattctttggctcttctctcttgtctttatctttgtttcatgttcattggcactttcagc |
39180018 |
T |
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| Q |
316 |
ataagcacctctttattttcaacttgactttgaaaccaaaatatgaaggttgtaattgccgaaagca-tttttatgctaaatag |
398 |
Q |
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| T |
39180019 |
ataagcacctctttattttcaacttgactttgaaaccaaaatatgaaggttgtaattgccaaaagcattttttatgctaaatag |
39180102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 57 - 368
Target Start/End: Original strand, 39221217 - 39221523
Alignment:
| Q |
57 |
gttggtgttttacatttaacttacccaccaagttattattagatcttatcttatgaagttgacttgagattagcatagcagaaaaagtcttgtgcttaca |
156 |
Q |
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| T |
39221217 |
gttggtgttttacatttaacttatccaccaagttattattagatct-----tatgaagctgacttgagattagcatagcagaaaaagtcttgtgcttatg |
39221311 |
T |
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| Q |
157 |
aaggaaaaaacaatactcttagttaaatttgctttcagacctttcactgagtatatttatatatatgcttcaatccctttctagtcactggtcatgtcaa |
256 |
Q |
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|||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39221312 |
aaggaaaaaacaattttgttggttaaatttgctttcagacctttcactgagtatatttatatatatgcttcaatccctttctagtcactggtcatctcaa |
39221411 |
T |
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| Q |
257 |
attctttggctcttctctcttgtctttatctttgtttcatgttcattgtcactttcagcataagcacctctttattttcaacttgactttgaaaccaaaa |
356 |
Q |
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| T |
39221412 |
attctttggctcttctctcttgtctctatatttgtttcatgttcattttcactttcagcaccagtacctctttattttcaacttgactttgaaaccaaaa |
39221511 |
T |
|
| Q |
357 |
tatgaaggttgt |
368 |
Q |
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|||||| ||||| |
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| T |
39221512 |
tatgaaagttgt |
39221523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 171
Target Start/End: Original strand, 39192404 - 39192513
Alignment:
| Q |
57 |
gttggtgttttacatttaacttacccaccaagttattattagatcttatcttatgaagttgacttgagattagcatagcagaaaaagtcttgtgcttaca |
156 |
Q |
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|||||||||||||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| | |||||||| |
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| T |
39192404 |
gttggtgttttacatttaacttactcatcaagttattattag-----atcttgtgaagcaaacttgagattagcatagcagaaaaagttatatgcttaca |
39192498 |
T |
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| Q |
157 |
aaggaaaaaacaata |
171 |
Q |
| |
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|| |||||||||||| |
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| T |
39192499 |
aaagaaaaaacaata |
39192513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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