View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17912_high_5 (Length: 305)
Name: NF17912_high_5
Description: NF17912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17912_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 289
Target Start/End: Original strand, 3431837 - 3432112
Alignment:
| Q |
10 |
aagaatatagtcagtaattggttcgtaattcgcttcgctacttgatacgagctctagtacacaaccatcaaagtattaggtacgaaggagtacatatagt |
109 |
Q |
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| T |
3431837 |
aagaacatagtcaataattggttcgtaattcgcttcgctacttgatacgagttctagtacacaaccctcaaagtattaggtacgaaggagtacatatagt |
3431936 |
T |
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| Q |
110 |
cgatacactattttaattcatggtatgatttaatatattcaacgctacatatatatgaatatgttttcaaattatacaaatgtaaagccatatttacaca |
209 |
Q |
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| T |
3431937 |
cgatacactattttaattcatggtatgatttaatatattcaacgctac----atatgaatatgttttcaaattatacaaatgtaaagccatatttacaca |
3432032 |
T |
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| Q |
210 |
gatgaaataatcaatataaatacaagatacacacacataaatatatactgtattttactgtaagaaatacgtatatattt |
289 |
Q |
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| T |
3432033 |
gatgaaataatcaatataaatacaagatacacacacataaatatatactgtattttactgtaagaaatacgtatatattt |
3432112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 34 - 289
Target Start/End: Complemental strand, 11913643 - 11913387
Alignment:
| Q |
34 |
gtaattcgcttcgctacttgatacgagctctagtacacaaccatcaaagtatta---ggtacgaaggagtacat----atagtcgatacactattttaat |
126 |
Q |
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| T |
11913643 |
gtaattcgcttcgttccttgatacgagctctattacacaaccctcaaagtattattaggtatgaaggagtacatgcatatagtcgatgcactatttcaaa |
11913544 |
T |
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| Q |
127 |
tcatggtatgatttaatatattcaacgctacatatatatgaatatgttttcaaattatacaaatgtaaagccatatttacacagatgaaataatcaatat |
226 |
Q |
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| T |
11913543 |
ttatggtatgatttaatatattaaacggcacct---tatgaatatgtttttaaattatacaaatgtaaagccatatttacac---tgaaataatcaatat |
11913450 |
T |
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| Q |
227 |
aaatacaagatacacacacataaatatatactgtattttactgtaagaaatacgtatatattt |
289 |
Q |
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| T |
11913449 |
aaatacaagatacacacacataaatatatactgtattttactgtaagaaatacatatatattt |
11913387 |
T |
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