View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17912_high_8 (Length: 269)
Name: NF17912_high_8
Description: NF17912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17912_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 21754924 - 21754682
Alignment:
| Q |
11 |
ttattctaagatggataaaattttcagttttgaattattgtagttatataatgattctgtttggaatatttatttgagtttatctactggaataagcatg |
110 |
Q |
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| T |
21754924 |
ttatgctaagatggataaaattttcagttttgaattattgtagttatataattattctgtttggaatatttatttgagcttatctactggaataagcatg |
21754825 |
T |
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| Q |
111 |
tgtgacactgttttatatgacatatgnnnnnnnctt-tgacatgttcatcagttgttttcaacttgttttagagtggtcatgctataagctgaaagaggg |
209 |
Q |
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| T |
21754824 |
tgtgacactgttttatatgacatatgaaaacaacttatgacatgttcatcagttgttttcaacttgttttagagtggtcatgctataagctgaaagaggg |
21754725 |
T |
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| Q |
210 |
aaaaaatggcatgaatgaaagggatctgattaaggttgtaatt |
252 |
Q |
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| T |
21754724 |
aaaaaatggcatgaatgaaagggatctgattaaggttgtaatt |
21754682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 8933920 - 8933882
Alignment:
| Q |
85 |
tgagtttatctactggaataagcatgtgtgacactgttt |
123 |
Q |
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| T |
8933920 |
tgagtttatatactggaataagcatgtgtgagactgttt |
8933882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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