View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17912_high_9 (Length: 249)
Name: NF17912_high_9
Description: NF17912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17912_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 7191774 - 7191539
Alignment:
| Q |
1 |
caatcatgaacttgaagtttaccatcgtgtgtgaaatattcttatataattgaatatatgcagggaattggtaaacgtggatgctcaatccgtgtgggaa |
100 |
Q |
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| T |
7191774 |
caatcatgaacttgaagtttaccatcttgtgtgaaatattcttatataattgaatatatgcagggaattggtaaacgtggctgctcaatccgtgtgggaa |
7191675 |
T |
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| Q |
101 |
gagagaccgagaagaatggaaaaggtgagtcacaatcaccaacaataattccatgtcattgttaacattcagagttcgaatgctggacctcctcattaat |
200 |
Q |
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| T |
7191674 |
gagagaccgagaagaatggaaaaggtgagtcacaatcaccaacaataattccatgtcattgttaacattcagagttcgaatgctggacctcctcattaat |
7191575 |
T |
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| Q |
201 |
aatctgtaagtgttaccatatacatgttgtttacct |
236 |
Q |
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| T |
7191574 |
aatctgtaagtgttaccatatacatgttgtttacct |
7191539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 7203075 - 7202961
Alignment:
| Q |
23 |
catcgtgtgtgaaatattcttatataattgaatatatgcagggaattggtaaacgtggatgctcaatccgtgtgggaagagagaccgagaagaatggaaa |
122 |
Q |
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| T |
7203075 |
catcttgtgtaaagtattcttataaaattgaatat--gcagggagtggctaaccgtggatgctcaatccgtgtgggaagagacaccgaaaagaatggcaa |
7202978 |
T |
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| Q |
123 |
aggtgagtcacaatcac |
139 |
Q |
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| T |
7202977 |
aggtgagtcacaatcac |
7202961 |
T |
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