View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17912_low_14 (Length: 220)

Name: NF17912_low_14

Description: NF17912

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17912_low_14

[»] chr3 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 145; E-Value: 2e-76

Query Start/End: Original strand, 10 - 193

Target Start/End: Original strand, 43964012 - 43964194

Alignment:

Q	10	catcatcaccaccataagaaggtttgatattttcaccagtaacaatgctgacatttccagccaataaaccatgaagttcatatgccatctgaagttagag	109	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43964012	catcatcaccaccataagaaggtttgatattttcaccagtaacaatgctgacatttccagccaataaaccatgaagttcatatgccatctgaagttagag	43964111	T

Q	110	ttaaacattattaatatactatttttcttaatnnnnnnnnnngagttgcatttcatatgcaaagataatctagcccaagatact	193	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43964112	ttaaacattattaatatactatttttcttaat-aaaaaaaaagagttgcatttcatatccaaagataatctagcccaagatact	43964194	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 74; E-Value: 4e-34

Query Start/End: Original strand, 12 - 101

Target Start/End: Original strand, 39166514 - 39166603

Alignment:

Q	12	tcatcaccaccataagaaggtttgatattttcaccagtaacaatgctgacatttccagccaataaaccatgaagttcatatgccatctga	101	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39166514	tcatctccaccataagaaggcttgatattttcaccagtgacaatgctgacatttccagccaataaaccatgcagttcatatgccatctga	39166603	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]