View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17912_low_2 (Length: 570)
Name: NF17912_low_2
Description: NF17912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17912_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 165 - 467
Target Start/End: Original strand, 13817951 - 13818249
Alignment:
| Q |
165 |
ccctaacttacatagtttattgcttataaacggaagttgatactaattaattagatgattggtgcatttaaatacataaatctagttaaattccatgacc |
264 |
Q |
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| T |
13817951 |
ccctaacttacatagtttattgcttataaacagaagttgatactaattaattagatgattggtacatttaaatacataaatctagttaaattccatgacc |
13818050 |
T |
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| Q |
265 |
tgagaaacatgcatgcaggtagaaatagccataataacaaagttccaatacaaaaacttttcttttctttcttatgataaaagtatcgacaattttggtc |
364 |
Q |
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| T |
13818051 |
tgagaaacatg----caggtagaaatagccataataacaaagttccaatacaaaaacttttcttttctttcttatgataaaagtttcgacaattttggtc |
13818146 |
T |
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| Q |
365 |
ccggagctcactagagttgggaaaagcttcaaggctcaatgaacactaacaaacttacatattacttgttaacgaagttcttatatcaacagcggaattt |
464 |
Q |
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| T |
13818147 |
ccggagctcactagagttgggaaaagcttcaaggctcaatgaacactaacaaatttacatattacttgctaacgaagttcttatatcaacggcggaattt |
13818246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 550
Target Start/End: Complemental strand, 30475952 - 30475864
Alignment:
| Q |
463 |
ttaaaaatacaagttagttatggttta-tttgcttatgatttgtttgtttnnnnnnnttttgtttatcgtttgttctattatcgccccc |
550 |
Q |
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| T |
30475952 |
ttaaaaatacaagttagttatggtttattttgcttatcatttgtatgttaaaaaaaatgttgcttatcgtttgttctattatcgccccc |
30475864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 463 - 550
Target Start/End: Original strand, 15480371 - 15480458
Alignment:
| Q |
463 |
ttaaaaatacaagttagttatggttta-tttgcttatgatttgtttgtttnnnnnnnttttgtttatcgtttgttctattatcgccccc |
550 |
Q |
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| T |
15480371 |
ttaaaaatacaagttagttatggtttattttgcttatcatttgtttg-ttaatttttttttgcttatcgtttgttctattatcgccccc |
15480458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 510
Target Start/End: Original strand, 24511352 - 24511400
Alignment:
| Q |
463 |
ttaaaaatacaagttagttatggttta-tttgcttatgatttgtttgtt |
510 |
Q |
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| T |
24511352 |
ttaaaaatacaagttagttatggtttattttgcttatcatttgtttgtt |
24511400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 406
Target Start/End: Complemental strand, 26411844 - 26411796
Alignment:
| Q |
358 |
tttggtcccggagctcactagagttgggaaaagcttcaaggctcaatga |
406 |
Q |
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| T |
26411844 |
tttggtctcggagctcactagagtgaggaaaagcttcgaggctcaatga |
26411796 |
T |
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