View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17912_low_3 (Length: 427)

Name: NF17912_low_3
Description: NF17912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17912_low_3
NF17912_low_3
[»] chr4 (7 HSPs)
chr4 (211-418)||(53302409-53302616)
chr4 (199-322)||(53302645-53302768)
chr4 (234-322)||(53302562-53302650)
chr4 (21-64)||(8238669-8238712)
chr4 (21-64)||(53302903-53302946)
chr4 (211-270)||(53302640-53302699)
chr4 (260-309)||(47964938-47964987)
[»] chr2 (8 HSPs)
chr2 (211-421)||(30269080-30269290)
chr2 (199-411)||(31331934-31332138)
chr2 (199-411)||(31338663-31338868)
chr2 (199-322)||(30269236-30269359)
chr2 (18-64)||(31331753-31331799)
chr2 (18-64)||(31338482-31338528)
chr2 (21-64)||(30269494-30269537)
chr2 (328-404)||(31481970-31482044)
[»] chr8 (9 HSPs)
chr8 (199-421)||(25641033-25641247)
chr8 (286-421)||(27813882-27814017)
chr8 (18-64)||(25641382-25641428)
chr8 (290-375)||(4756122-4756207)
chr8 (306-388)||(4743905-4743987)
chr8 (265-304)||(4756144-4756183)
chr8 (211-255)||(39195506-39195550)
chr8 (265-300)||(39195518-39195553)
chr8 (204-248)||(4756143-4756187)
[»] chr3 (5 HSPs)
chr3 (199-421)||(7403913-7404127)
chr3 (18-64)||(7401293-7401339)
chr3 (281-396)||(36086937-36087052)
chr3 (352-396)||(16456650-16456694)
chr3 (212-300)||(36086983-36087064)
[»] chr7 (2 HSPs)
chr7 (266-411)||(4682970-4683115)
chr7 (265-375)||(1528123-1528233)
[»] chr6 (1 HSPs)
chr6 (199-421)||(30824979-30825193)
[»] chr5 (6 HSPs)
chr5 (201-412)||(37190443-37190646)
chr5 (201-412)||(7413056-7413259)
chr5 (205-412)||(5075968-5076167)
chr5 (18-64)||(7413440-7413486)
chr5 (18-64)||(37190828-37190874)
chr5 (18-64)||(5075736-5075782)
[»] chr1 (2 HSPs)
chr1 (301-388)||(47694191-47694278)
chr1 (265-358)||(47799539-47799632)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 211 - 418
Target Start/End: Complemental strand, 53302616 - 53302409
Alignment:
Q  211 aatgcttgttttgtgtttgataaaatgctgcaaccaaactttatgacacaatgctacaatgcctgttttctgtttgataaaatgcttcaatcaaccttta 310  Q
    |||||||||||| |||||||||||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  53302616 aatgcttgttttctgtttgataaaatgcttcaatcagactttatgacacaatgctacaatgcttgttttctgtttgataaaatgcttcaatcaaccttta 53302517  T
Q  311 tggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgctcttaaa 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53302516 tggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgctcttaaa 53302417  T
Q  411 atattttt 418  Q
    || |||||    
T  53302416 atgttttt 53302409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 199 - 322
Target Start/End: Complemental strand, 53302768 - 53302645
Alignment:
Q  199 gcttcatggtagaatgcttgttttgtgtttgataaaatgctgcaaccaaactttatgacacaatgctacaatgcctgttttctgtttgataaaatgcttc 298  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53302768 gcttcattgtagaatgcttgttttgtgtttgataaaatgttgcaaccaaactttatgacacaatgctacaatgcctgttttctgtttgataaaatgcttc 53302669  T
Q  299 aatcaacctttatggtacaatgct 322  Q
    ||||||  ||||||  ||||||||    
T  53302668 aatcaaattttatgacacaatgct 53302645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 234 - 322
Target Start/End: Complemental strand, 53302650 - 53302562
Alignment:
Q  234 aatgctgcaaccaaactttatgacacaatgctacaatgcctgttttctgtttgataaaatgcttcaatcaacctttatggtacaatgct 322  Q
    |||||| ||| |||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||  |||||||  ||||||||    
T  53302650 aatgctacaatcaaattttatgatacaatgctacaatgcttgttttctgtttgataaaatgcttcaatcagactttatgacacaatgct 53302562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 8238712 - 8238669
Alignment:
Q  21 atttcatcttccatttcgtatttgatttcatcttcgattatgta 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  8238712 atttcatcttccatttcgtatttgatttcatcttcgattatgta 8238669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 53302946 - 53302903
Alignment:
Q  21 atttcatcttccatttcgtatttgatttcatcttcgattatgta 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  53302946 atttcatcttccatttcgtatttgatttcatcttcgattatgta 53302903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 53302699 - 53302640
Alignment:
Q  211 aatgcttgttttgtgtttgataaaatgctgcaaccaaactttatgacacaatgctacaat 270  Q
    ||||| |||||| |||||||||||||||| ||| |||| |||||||||||||||||||||    
T  53302699 aatgcctgttttctgtttgataaaatgcttcaatcaaattttatgacacaatgctacaat 53302640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 47964987 - 47964938
Alignment:
Q  260 aatgctacaatgcctgttttctgtttgataaaatgcttcaatcaaccttt 309  Q
    |||| |||| ||| ||||||||||||||||||||||||||| ||| ||||    
T  47964987 aatgatacactgcatgttttctgtttgataaaatgcttcaaccaaacttt 47964938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 183; Significance: 7e-99; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 211 - 421
Target Start/End: Complemental strand, 30269290 - 30269080
Alignment:
Q  211 aatgcttgttttgtgtttgataaaatgctgcaaccaaactttatgacacaatgctacaatgcctgttttctgtttgataaaatgcttcaatcaaccttta 310  Q
    |||||||||||| |||||||||||||||| ||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  30269290 aatgcttgttttctgtttgataaaatgcttcaatcaaactttttgacacaatgctacaatgcttgttttctgtttgataaaatgcttcaatctaccttta 30269191  T
Q  311 tggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgctcttaaa 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30269190 tggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgctcttaaa 30269091  T
Q  411 atatttttcga 421  Q
    || ||||||||    
T  30269090 atgtttttcga 30269080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 199 - 411
Target Start/End: Original strand, 31331934 - 31332138
Alignment:
Q  199 gcttcatggtagaatgcttgttttgtgtttgataaaatgctgcaaccaaactttatgacacaatgctacaatgcctgttttctgtttgataaaatgcttc 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  31331934 gcttcatggtagaatgcttgttttgtgtttgataaaatgctgcaaccaaactttatgacacaa--------tgcctgttttctgtttgataaaatgcttc 31332025  T
Q  299 aatcaacctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatc 398  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31332026 aatcaacctttatggtacagtgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatc 31332125  T
Q  399 tatgctcttaaaa 411  Q
    |||||||||||||    
T  31332126 tatgctcttaaaa 31332138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 199 - 411
Target Start/End: Original strand, 31338663 - 31338868
Alignment:
Q  199 gcttcatggtagaatgcttgttttgtgtttgataaaatgctgcaaccaaactttatgacacaatgctacaatgcctgttttctgtttgataaaatgcttc 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  31338663 gcttcatggtagaatgcttgttttgtgtttgataaaatgctgcaaccaaactttatgacacaatgc--------ctgttttctgtttgataaaatgcttc 31338754  T
Q  299 aatcaaccttt-atggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcat 397  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31338755 aatcaaccttttatggtacagtgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcat 31338854  T
Q  398 ctatgctcttaaaa 411  Q
    ||||||||||||||    
T  31338855 ctatgctcttaaaa 31338868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 199 - 322
Target Start/End: Complemental strand, 30269359 - 30269236
Alignment:
Q  199 gcttcatggtagaatgcttgttttgtgtttgataaaatgctgcaaccaaactttatgacacaatgctacaatgcctgttttctgtttgataaaatgcttc 298  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30269359 gcttcattgtagaatgcttgttttgtgtttgataaaatgctgcaaccaaactttatgacacaatgctacaatgcttgttttctgtttgataaaatgcttc 30269260  T
Q  299 aatcaacctttatggtacaatgct 322  Q
    |||||| |||| ||  ||||||||    
T  30269259 aatcaaactttttgacacaatgct 30269236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 31331753 - 31331799
Alignment:
Q  18 tcaatttcatcttccatttcgtatttgatttcatcttcgattatgta 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31331753 tcaatttcatcttccatttcgtatttgatttcatcttcgattatgta 31331799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 31338482 - 31338528
Alignment:
Q  18 tcaatttcatcttccatttcgtatttgatttcatcttcgattatgta 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31338482 tcaatttcatcttccatttcgtatttgatttcatcttcgattatgta 31338528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 30269537 - 30269494
Alignment:
Q  21 atttcatcttccatttcgtatttgatttcatcttcgattatgta 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  30269537 atttcatcttccatttcgtatttgatttcatcttcgattatgta 30269494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 404
Target Start/End: Complemental strand, 31482044 - 31481970
Alignment:
Q  328 tttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgct 404  Q
    ||||| ||||||||||||| | |||||||||||||||||||||||  |||| ||||||||||| ||||  |||||||    
T  31482044 tttgtttgataaaatgcttaagccaaattttatttacttctctaa--tcagtaatgtgattcttctgcccctatgct 31481970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 199 - 421
Target Start/End: Complemental strand, 25641247 - 25641033
Alignment:
Q  199 gcttcatggtagaatgcttgttttgtgtttgataaaatgctgcaaccaaactttatgacacaatgctacaatgcctgttttctgtttgataaaatgcttc 298  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  25641247 gcttcatggtagaatgcttgttttgtgtttgataaaatgatgcaaccaaactttatgacacaatgc--------ctgttttctgtttgataaaatgcttc 25641156  T
Q  299 aatcaacctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatc 398  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25641155 aatcaacctttatggtacagtgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatc 25641056  T
Q  399 tatgctcttaaaatatttttcga 421  Q
    |||||||||||||| ||||||||    
T  25641055 tatgctcttaaaatgtttttcga 25641033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 286 - 421
Target Start/End: Complemental strand, 27814017 - 27813882
Alignment:
Q  286 gataaaatgcttcaatcaacctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtg 385  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27814017 gataaaatgcttcaatcaacctttatggtacaatgcttgatttttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagcaatgtg 27813918  T
Q  386 attctcctgcatctatgctcttaaaatatttttcga 421  Q
    |||||||||||||||||||||| |||| | ||||||    
T  27813917 attctcctgcatctatgctctttaaatgtgtttcga 27813882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 25641428 - 25641382
Alignment:
Q  18 tcaatttcatcttccatttcgtatttgatttcatcttcgattatgta 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25641428 tcaatttcatcttccatttcgtatttgatttcatcttcgattatgta 25641382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 375
Target Start/End: Complemental strand, 4756207 - 4756122
Alignment:
Q  290 aaatgcttcaatcaacctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatct 375  Q
    |||||||| || ||| ||||||||||||||||||  | | ||| ||||||||||||| || ||||||| |||||||||||||||||    
T  4756207 aaatgctttaaacaatctttatggtacaatgcttgttttctgtttgataaaatgcttcaatcaaatttgatttacttctctaatct 4756122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 388
Target Start/End: Complemental strand, 4743987 - 4743905
Alignment:
Q  306 ctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgatt 388  Q
    |||||||||| |||||||  | | ||| |||| |||||||| ||||| ||| ||||||||||||||||||||| |||||||||    
T  4743987 ctttatggtataatgcttgttttctgtttgatgaaatgcttcaaccagattgtatttacttctctaatctcagtaatgtgatt 4743905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 304
Target Start/End: Complemental strand, 4756183 - 4756144
Alignment:
Q  265 tacaatgcctgttttctgtttgataaaatgcttcaatcaa 304  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  4756183 tacaatgcttgttttctgtttgataaaatgcttcaatcaa 4756144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 39195550 - 39195506
Alignment:
Q  211 aatgcttgttttgtgtttgataaaatgctgcaaccaaactttatg 255  Q
    |||||||||||| |||||||||||||||| ||||| |||||||||    
T  39195550 aatgcttgttttctgtttgataaaatgcttcaaccgaactttatg 39195506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 300
Target Start/End: Complemental strand, 39195553 - 39195518
Alignment:
Q  265 tacaatgcctgttttctgtttgataaaatgcttcaa 300  Q
    |||||||| |||||||||||||||||||||||||||    
T  39195553 tacaatgcttgttttctgtttgataaaatgcttcaa 39195518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 4756187 - 4756143
Alignment:
Q  204 atggtagaatgcttgttttgtgtttgataaaatgctgcaaccaaa 248  Q
    |||||| |||||||||||| |||||||||||||||| ||| ||||    
T  4756187 atggtacaatgcttgttttctgtttgataaaatgcttcaatcaaa 4756143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 7e-96; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 199 - 421
Target Start/End: Original strand, 7403913 - 7404127
Alignment:
Q  199 gcttcatggtagaatgcttgttttgtgtttgataaaatgctgcaaccaaactttatgacacaatgctacaatgcctgttttctgtttgataaaatgcttc 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  7403913 gcttcatggtagaatgcttgttttgtgtttgataaaatgctgcaaccaaactttatgacacaa--------tgcctgttttctgtttgataaaatgcttc 7404004  T
Q  299 aatcaacctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatc 398  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  7404005 aatcaacctttatggtacagtgcttaatgtttgtctgataaaatgcttgaaccaaatattatttactcctctaatctcagaaatgtgattctcctgcatc 7404104  T
Q  399 tatgctcttaaaatatttttcga 421  Q
    |||||||||||||| ||||||||    
T  7404105 tatgctcttaaaatgtttttcga 7404127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 7401293 - 7401339
Alignment:
Q  18 tcaatttcatcttccatttcgtatttgatttcatcttcgattatgta 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7401293 tcaatttcatcttccatttcgtatttgatttcatcttcgattatgta 7401339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 396
Target Start/End: Complemental strand, 36087052 - 36086937
Alignment:
Q  281 tgtttgataaaatgcttcaatcaaccttt-atggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcaga 379  Q
    |||||||||||||||||||| ||| |||| |||||||||| | |  | | ||| ||||||||||||| ||||||||||| ||||||| |||||||||||     
T  36087052 tgtttgataaaatgcttcaaccaaacttttatggtacaattcatgttttatgtttgataaaatgcttcaaccaaattttgtttactt-tctaatctcagt 36086954  T
Q  380 aatgtgattctcctgca 396  Q
    ||| ||||||| |||||    
T  36086953 aatctgattcttctgca 36086937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 16456650 - 16456694
Alignment:
Q  352 aaattttatttacttctctaatctcagaaatgtgattctcctgca 396  Q
    |||||||||||||||||||||||| || |||||||||||||||||    
T  16456650 aaattttatttacttctctaatcttagtaatgtgattctcctgca 16456694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 300
Target Start/End: Complemental strand, 36087064 - 36086983
Alignment:
Q  212 atgcttgttttgtgtttgataaaatgctgcaaccaaactttatgacacaatgctacaatgcctgttttctgtttgataaaatgcttcaa 300  Q
    ||||||| |||||||||||||||||||| ||||||||||||        ||| |||||| | |||||| ||||||||||||||||||||    
T  36087064 atgcttgctttgtgtttgataaaatgcttcaaccaaacttt-------tatggtacaattcatgttttatgtttgataaaatgcttcaa 36086983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 266 - 411
Target Start/End: Original strand, 4682970 - 4683115
Alignment:
Q  266 acaatgcctgttttctgtttgataaaatgcttcaatcaacctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttact 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4682970 acaatgcctgttttctgtttgataaaatgcttcaatcaacctttatggtacagtgcttaatgtttgtctgataaaatgcttgaaccaaattttatttact 4683069  T
Q  366 tctctaatctcagaaatgtgattctcctgcatctatgctcttaaaa 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  4683070 tctctaatctcagaaatgtgattctcctgcatctatgctcttaaaa 4683115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 375
Target Start/End: Original strand, 1528123 - 1528233
Alignment:
Q  265 tacaatgcctgttttctgtttgataaaatgcttcaatcaacctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttac 364  Q
    |||||||| |||||| ||||||||||||  |||||| |||  ||||||||| |||||||  |   | | ||||||||||||| |||||||||||||||||    
T  1528123 tacaatgcttgttttttgtttgataaaaaacttcaaccaaaatttatggtagaatgcttgcttactttttgataaaatgcttcaaccaaattttatttac 1528222  T
Q  365 ttctctaatct 375  Q
    |||| ||||||    
T  1528223 ttctttaatct 1528233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 199 - 421
Target Start/End: Complemental strand, 30825193 - 30824979
Alignment:
Q  199 gcttcatggtagaatgcttgttttgtgtttgataaaatgctgcaaccaaactttatgacacaatgctacaatgcctgttttctgtttgataaaatgcttc 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||        ||| |||||||||||||||||||||    
T  30825193 gcttcatggtagaatgcttgttttgtgtttgataaaatgctgcaaccaaactttatgactcaatgct--------tgtattctgtttgataaaatgcttc 30825102  T
Q  299 aatcaacctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatc 398  Q
    ||||||||||||||||||||||||| || |||||||||| |||||  ||||||||||||||||||||  ||||||||||  |||||||||||||||||||    
T  30825101 aatcaacctttatggtacaatgcttgatttttgtctgatcaaatgagtgaaccaaattttatttactaatctaatctcatcaatgtgattctcctgcatc 30825002  T
Q  399 tatgctcttaaaatatttttcga 421  Q
    ||||||||| |||| | ||||||    
T  30825001 tatgctctttaaatgtgtttcga 30824979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 5e-63; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 201 - 412
Target Start/End: Complemental strand, 37190646 - 37190443
Alignment:
Q  201 ttcatggtagaatgcttgttttgtgtttgataaaatgctgcaaccaaactttatgacacaatgctacaatgcctgttttctgtttgataaaatgcttcaa 300  Q
    ||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||        |||||| ||||||||||||||||||||    
T  37190646 ttcatggtagaatgcttgttttgtgttcgataaaatgcttcaactaaactttatgacacaatgct--------tgttttgtgtttgataaaatgcttcaa 37190555  T
Q  301 tcaacctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatcta 400  Q
    ||||||||||||||||||||||| || ||||| |||||||||| |||||| |||||||||||||||||| ||| || | ||||||||||||| |||||||    
T  37190554 tcaacctttatggtacaatgcttgatttttgtttgataaaatgtttgaactaaattttatttacttctcgaatatctgtaatgtgattctccagcatcta 37190455  T
Q  401 tgctcttaaaat 412  Q
    ||||||| ||||    
T  37190454 tgctctttaaat 37190443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 201 - 412
Target Start/End: Complemental strand, 7413259 - 7413056
Alignment:
Q  201 ttcatggtagaatgcttgttttgtgtttgataaaatgctgcaaccaaactttatgacacaatgctacaatgcctgttttctgtttgataaaatgcttcaa 300  Q
    ||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||        |||||| ||||||||||||||| ||||    
T  7413259 ttcatggtagaatgcttgttttgtgttcgataaaatgcttcaactaaactttatgacacaatgct--------tgttttgtgtttgataaaatgcctcaa 7413168  T
Q  301 tcaacctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatcta 400  Q
    ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||||||||| ||| |  | ||||||||||||| |||||||    
T  7413167 tcaacctttatggtacaatgcttgatttttgtttgataaaatgcttgaaccaaattttttttacttctcgaatatttgtaatgtgattctccagcatcta 7413068  T
Q  401 tgctcttaaaat 412  Q
    ||||||| ||||    
T  7413067 tgctctttaaat 7413056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 205 - 412
Target Start/End: Original strand, 5075968 - 5076167
Alignment:
Q  205 tggtagaatgcttgttttgtgtttgataaaatgctgcaaccaaactttatgacacaatgctacaatgcctgttttctgtttgataaaatgcttcaatcaa 304  Q
    ||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||| | ||        |||||| ||||||||||||||| ||||||||    
T  5075968 tggtagaatgcttgttttgtgttcgataaaatgcttcaactaaactttatgacacagttct--------tgttttgtgtttgataaaatgcctcaatcaa 5076059  T
Q  305 cctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgct 404  Q
    ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| ||  || | ||||||||||||| |||||||||||    
T  5076060 cctttatggtacaatgcttgatttttgtttgataaaatgcttgaaccaaattttatttacttctcaaaaatctgtaatgtgattctccagcatctatgct 5076159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 7413486 - 7413440
Alignment:
Q  18 tcaatttcatcttccatttcgtatttgatttcatcttcgattatgta 64  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||    
T  7413486 tcaattccatcttccatttcatatttgatttgatcttcgattatgta 7413440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 37190874 - 37190828
Alignment:
Q  18 tcaatttcatcttccatttcgtatttgatttcatcttcgattatgta 64  Q
    |||||||||||||||||||| |||||||||| | |||||||||||||    
T  37190874 tcaatttcatcttccatttcatatttgatttgagcttcgattatgta 37190828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 5075736 - 5075782
Alignment:
Q  18 tcaatttcatcttccatttcgtatttgatttcatcttcgattatgta 64  Q
    |||||| ||||||||||||| |||||||||| ||||| |||||||||    
T  5075736 tcaattccatcttccatttcatatttgatttgatctttgattatgta 5075782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 301 - 388
Target Start/End: Original strand, 47694191 - 47694278
Alignment:
Q  301 tcaacctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgatt 388  Q
    |||| |||||||||||||||| |  | | ||| |||||||||||||  |||||||||||||||||||||||||||| | |||||||||    
T  47694191 tcaaactttatggtacaatgcatcttttgtgtttgataaaatgcttcgaccaaattttatttacttctctaatctccgtaatgtgatt 47694278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 358
Target Start/End: Original strand, 47799539 - 47799632
Alignment:
Q  265 tacaatgcctgttttctgtttgataaaatgcttcaatcaacctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaatttt 358  Q
    |||||| | |||||| |||||||| ||||||||||| |||  ||||| |||||||||||  | | ||| |||| |||||||| |||||| ||||    
T  47799539 tacaattcttgttttatgtttgatcaaatgcttcaaccaaaatttatcgtacaatgcttgctttctgtttgatcaaatgcttcaaccaattttt 47799632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University